FASTA searches a protein or DNA sequence data bank 36.3.4 Apr, 2011 Please cite: W.R. Pearson & D.J. Lipman PNAS (1988) 85:2444-2448 Query: pF1KE3161, 375 aa 1>>>pF1KE3161 375 - 375 aa - 375 aa Library: human.CCDS.faa 18511270 residues in 32554 sequences Statistics: Expectation_n fit: rho(ln(x))= 5.1471+/-0.000722; mu= 18.0310+/- 0.044 mean_var=72.6090+/-14.602, 0's: 0 Z-trim(110.1): 17 B-trim: 0 in 0/49 Lambda= 0.150515 statistics sampled from 11368 (11379) to 11368 sequences Algorithm: FASTA (3.7 Nov 2010) [optimized] Parameters: BL50 matrix (15:-5), open/ext: -10/-2 ktup: 2, E-join: 1 (0.727), E-opt: 0.2 (0.35), width: 16 Scan time: 2.970 The best scores are: opt bits E(32554) CCDS1860.1 FANCL gene_id:55120|Hs108|chr2 ( 375) 2572 567.4 7.1e-162 CCDS46294.1 FANCL gene_id:55120|Hs108|chr2 ( 380) 2552 563.1 1.5e-160 >>CCDS1860.1 FANCL gene_id:55120|Hs108|chr2 (375 aa) initn: 2572 init1: 2572 opt: 2572 Z-score: 3019.6 bits: 567.4 E(32554): 7.1e-162 Smith-Waterman score: 2572; 100.0% identity (100.0% similar) in 375 aa overlap (1-375:1-375) 10 20 30 40 50 60 pF1KE3 MAVTEASLLRQCPLLLPQNRSKTVYEGFISAQGRDFHLRIVLPEDLQLKNARLLCSWQLR :::::::::::::::::::::::::::::::::::::::::::::::::::::::::::: CCDS18 MAVTEASLLRQCPLLLPQNRSKTVYEGFISAQGRDFHLRIVLPEDLQLKNARLLCSWQLR 10 20 30 40 50 60 70 80 90 100 110 120 pF1KE3 TILSGYHRIVQQRMQHSPDLMSFMMELKMLLEVALKNRQELYALPPPPQFYSSLIEEIGT :::::::::::::::::::::::::::::::::::::::::::::::::::::::::::: CCDS18 TILSGYHRIVQQRMQHSPDLMSFMMELKMLLEVALKNRQELYALPPPPQFYSSLIEEIGT 70 80 90 100 110 120 130 140 150 160 170 180 pF1KE3 LGWDKLVYADTCFSTIKLKAEDASGREHLITLKLKAKYPAESPDYFVDFPVPFCASWTPQ :::::::::::::::::::::::::::::::::::::::::::::::::::::::::::: CCDS18 LGWDKLVYADTCFSTIKLKAEDASGREHLITLKLKAKYPAESPDYFVDFPVPFCASWTPQ 130 140 150 160 170 180 190 200 210 220 230 240 pF1KE3 SSLISIYSQFLAAIESLKAFWDVMDEIDEKTWVLEPEKPPRSATARRIALGNNVSINIEV :::::::::::::::::::::::::::::::::::::::::::::::::::::::::::: CCDS18 SSLISIYSQFLAAIESLKAFWDVMDEIDEKTWVLEPEKPPRSATARRIALGNNVSINIEV 190 200 210 220 230 240 250 260 270 280 290 300 pF1KE3 DPRHPTMLPECFFLGADHVVKPLGIKLSRNIHLWDPENSVLQNLKDVLEIDFPARAILEK :::::::::::::::::::::::::::::::::::::::::::::::::::::::::::: CCDS18 DPRHPTMLPECFFLGADHVVKPLGIKLSRNIHLWDPENSVLQNLKDVLEIDFPARAILEK 250 260 270 280 290 300 310 320 330 340 350 360 pF1KE3 SDFTMDCGICYAYQLDGTIPDQVCDNSQCGQPFHQICLYEWLRGLLTSRQSFNIIFGECP :::::::::::::::::::::::::::::::::::::::::::::::::::::::::::: CCDS18 SDFTMDCGICYAYQLDGTIPDQVCDNSQCGQPFHQICLYEWLRGLLTSRQSFNIIFGECP 310 320 330 340 350 360 370 pF1KE3 YCSKPITLKMSGRKH ::::::::::::::: CCDS18 YCSKPITLKMSGRKH 370 >>CCDS46294.1 FANCL gene_id:55120|Hs108|chr2 (380 aa) initn: 1376 init1: 1376 opt: 2552 Z-score: 2996.1 bits: 563.1 E(32554): 1.5e-160 Smith-Waterman score: 2552; 98.7% identity (98.7% similar) in 380 aa overlap (1-375:1-380) 10 20 30 40 50 60 pF1KE3 MAVTEASLLRQCPLLLPQNRSKTVYEGFISAQGRDFHLRIVLPEDLQLKNARLLCSWQLR :::::::::::::::::::::::::::::::::::::::::::::::::::::::::::: CCDS46 MAVTEASLLRQCPLLLPQNRSKTVYEGFISAQGRDFHLRIVLPEDLQLKNARLLCSWQLR 10 20 30 40 50 60 70 80 90 100 110 120 pF1KE3 TILSGYHRIVQQRMQHSPDLMSFMMELKMLLEVALKNRQELYALPPPPQFYSSLIEEIGT :::::::::::::::::::::::::::::::::::::::::::::::::::::::::::: CCDS46 TILSGYHRIVQQRMQHSPDLMSFMMELKMLLEVALKNRQELYALPPPPQFYSSLIEEIGT 70 80 90 100 110 120 130 140 150 160 170 180 pF1KE3 LGWDKLVYADTCFSTIKLKAEDASGREHLITLKLKAKYPAESPDYFVDFPVPFCASWTPQ :::::::::::::::::::::::::::::::::::::::::::::::::::::::::::: CCDS46 LGWDKLVYADTCFSTIKLKAEDASGREHLITLKLKAKYPAESPDYFVDFPVPFCASWTPQ 130 140 150 160 170 180 190 200 210 220 230 pF1KE3 -----SSLISIYSQFLAAIESLKAFWDVMDEIDEKTWVLEPEKPPRSATARRIALGNNVS ::::::::::::::::::::::::::::::::::::::::::::::::::::::: CCDS46 VNSPQSSLISIYSQFLAAIESLKAFWDVMDEIDEKTWVLEPEKPPRSATARRIALGNNVS 190 200 210 220 230 240 240 250 260 270 280 290 pF1KE3 INIEVDPRHPTMLPECFFLGADHVVKPLGIKLSRNIHLWDPENSVLQNLKDVLEIDFPAR :::::::::::::::::::::::::::::::::::::::::::::::::::::::::::: CCDS46 INIEVDPRHPTMLPECFFLGADHVVKPLGIKLSRNIHLWDPENSVLQNLKDVLEIDFPAR 250 260 270 280 290 300 300 310 320 330 340 350 pF1KE3 AILEKSDFTMDCGICYAYQLDGTIPDQVCDNSQCGQPFHQICLYEWLRGLLTSRQSFNII :::::::::::::::::::::::::::::::::::::::::::::::::::::::::::: CCDS46 AILEKSDFTMDCGICYAYQLDGTIPDQVCDNSQCGQPFHQICLYEWLRGLLTSRQSFNII 310 320 330 340 350 360 360 370 pF1KE3 FGECPYCSKPITLKMSGRKH :::::::::::::::::::: CCDS46 FGECPYCSKPITLKMSGRKH 370 380 375 residues in 1 query sequences 18511270 residues in 32554 library sequences Tcomplib [36.3.4 Apr, 2011] (8 proc) start: Sun Nov 6 18:28:13 2016 done: Sun Nov 6 18:28:14 2016 Total Scan time: 2.970 Total Display time: -0.010 Function used was FASTA [36.3.4 Apr, 2011]