FASTA searches a protein or DNA sequence data bank 36.3.4 Apr, 2011 Please cite: W.R. Pearson & D.J. Lipman PNAS (1988) 85:2444-2448 Query: pF1KE4001, 186 aa 1>>>pF1KE4001 186 - 186 aa - 186 aa Library: human.CCDS.faa 18511270 residues in 32554 sequences Statistics: Expectation_n fit: rho(ln(x))= 5.3859+/-0.000898; mu= 12.5994+/- 0.054 mean_var=80.8456+/-17.393, 0's: 0 Z-trim(106.5): 175 B-trim: 810 in 2/48 Lambda= 0.142642 statistics sampled from 8783 (8997) to 8783 sequences Algorithm: FASTA (3.7 Nov 2010) [optimized] Parameters: BL50 matrix (15:-5), open/ext: -10/-2 ktup: 2, E-join: 1 (0.664), E-opt: 0.2 (0.276), width: 16 Scan time: 1.900 The best scores are: opt bits E(32554) CCDS1421.1 ARL8A gene_id:127829|Hs108|chr1 ( 186) 1245 265.6 1.3e-71 CCDS2566.1 ARL8B gene_id:55207|Hs108|chr3 ( 186) 1182 252.6 1e-67 CCDS73004.1 ARL8A gene_id:127829|Hs108|chr1 ( 147) 836 181.3 2.3e-46 CCDS9695.1 ARF6 gene_id:382|Hs108|chr14 ( 175) 402 92.1 2e-19 CCDS1565.1 ARF1 gene_id:375|Hs108|chr1 ( 181) 391 89.8 9.9e-19 CCDS44958.1 ARL1 gene_id:400|Hs108|chr12 ( 181) 389 89.4 1.3e-18 CCDS8774.1 ARF3 gene_id:377|Hs108|chr12 ( 181) 386 88.8 2e-18 CCDS34745.1 ARF5 gene_id:381|Hs108|chr7 ( 180) 375 86.5 9.7e-18 CCDS8088.1 ARL2 gene_id:402|Hs108|chr11 ( 184) 367 84.9 3.1e-17 CCDS2925.1 ARL13B gene_id:200894|Hs108|chr3 ( 428) 369 85.6 4.4e-17 CCDS2884.1 ARF4 gene_id:378|Hs108|chr3 ( 180) 360 83.5 8.2e-17 CCDS7538.1 ARL3 gene_id:403|Hs108|chr10 ( 182) 356 82.6 1.5e-16 CCDS9419.1 ARL11 gene_id:115761|Hs108|chr13 ( 196) 344 80.2 8.6e-16 CCDS11463.1 ARL4D gene_id:379|Hs108|chr17 ( 201) 332 77.7 4.9e-15 CCDS2512.1 ARL4C gene_id:10123|Hs108|chr2 ( 192) 331 77.5 5.4e-15 CCDS5359.1 ARL4A gene_id:10124|Hs108|chr7 ( 200) 331 77.5 5.6e-15 CCDS63169.1 ARL4C gene_id:10123|Hs108|chr2 ( 201) 331 77.5 5.6e-15 CCDS3192.1 ARL14 gene_id:80117|Hs108|chr3 ( 192) 328 76.9 8.3e-15 CCDS2928.1 ARL6 gene_id:84100|Hs108|chr3 ( 186) 318 74.8 3.4e-14 CCDS73510.1 ARL1 gene_id:400|Hs108|chr12 ( 135) 312 73.5 6.2e-14 CCDS3987.1 TRIM23 gene_id:373|Hs108|chr5 ( 574) 318 75.2 8e-14 CCDS7131.1 ARL5B gene_id:221079|Hs108|chr10 ( 179) 309 73.0 1.2e-13 CCDS3986.1 TRIM23 gene_id:373|Hs108|chr5 ( 546) 312 73.9 1.8e-13 CCDS13533.1 ARFRP1 gene_id:10139|Hs108|chr20 ( 201) 305 72.2 2.3e-13 CCDS43322.1 TRIM23 gene_id:373|Hs108|chr5 ( 569) 308 73.1 3.3e-13 CCDS4400.1 ARL10 gene_id:285598|Hs108|chr5 ( 244) 302 71.6 4.1e-13 CCDS46630.1 ARFRP1 gene_id:10139|Hs108|chr20 ( 173) 297 70.5 6.4e-13 CCDS2195.1 ARL5A gene_id:26225|Hs108|chr2 ( 179) 297 70.5 6.5e-13 CCDS4177.1 SAR1B gene_id:51128|Hs108|chr5 ( 198) 283 67.6 5.2e-12 CCDS54850.1 ARL15 gene_id:54622|Hs108|chr5 ( 204) 282 67.4 6.1e-12 CCDS7298.1 SAR1A gene_id:56681|Hs108|chr10 ( 198) 267 64.3 5.1e-11 >>CCDS1421.1 ARL8A gene_id:127829|Hs108|chr1 (186 aa) initn: 1245 init1: 1245 opt: 1245 Z-score: 1399.4 bits: 265.6 E(32554): 1.3e-71 Smith-Waterman score: 1245; 100.0% identity (100.0% similar) in 186 aa overlap (1-186:1-186) 10 20 30 40 50 60 pF1KE4 MIALFNKLLDWFKALFWKEEMELTLVGLQYSGKTTFVNVIASGQFNEDMIPTVGFNMRKI :::::::::::::::::::::::::::::::::::::::::::::::::::::::::::: CCDS14 MIALFNKLLDWFKALFWKEEMELTLVGLQYSGKTTFVNVIASGQFNEDMIPTVGFNMRKI 10 20 30 40 50 60 70 80 90 100 110 120 pF1KE4 TKGNVTIKLWDIGGQPRFRSMWERYCRGVSAIVYMVDAADQEKIEASKNELHNLLDKPQL :::::::::::::::::::::::::::::::::::::::::::::::::::::::::::: CCDS14 TKGNVTIKLWDIGGQPRFRSMWERYCRGVSAIVYMVDAADQEKIEASKNELHNLLDKPQL 70 80 90 100 110 120 130 140 150 160 170 180 pF1KE4 QGIPVLVLGNKRDLPGALDEKELIEKMNLSAIQDREICCYSISCKEKDNIDITLQWLIQH :::::::::::::::::::::::::::::::::::::::::::::::::::::::::::: CCDS14 QGIPVLVLGNKRDLPGALDEKELIEKMNLSAIQDREICCYSISCKEKDNIDITLQWLIQH 130 140 150 160 170 180 pF1KE4 SKSRRS :::::: CCDS14 SKSRRS >>CCDS2566.1 ARL8B gene_id:55207|Hs108|chr3 (186 aa) initn: 1182 init1: 1182 opt: 1182 Z-score: 1329.3 bits: 252.6 E(32554): 1e-67 Smith-Waterman score: 1182; 91.9% identity (100.0% similar) in 186 aa overlap (1-186:1-186) 10 20 30 40 50 60 pF1KE4 MIALFNKLLDWFKALFWKEEMELTLVGLQYSGKTTFVNVIASGQFNEDMIPTVGFNMRKI :.::...:::::..:::::::::::::::::::::::::::::::.:::::::::::::. CCDS25 MLALISRLLDWFRSLFWKEEMELTLVGLQYSGKTTFVNVIASGQFSEDMIPTVGFNMRKV 10 20 30 40 50 60 70 80 90 100 110 120 pF1KE4 TKGNVTIKLWDIGGQPRFRSMWERYCRGVSAIVYMVDAADQEKIEASKNELHNLLDKPQL ::::::::.::::::::::::::::::::.:::::.::::.::::::.:::::::::::: CCDS25 TKGNVTIKIWDIGGQPRFRSMWERYCRGVNAIVYMIDAADREKIEASRNELHNLLDKPQL 70 80 90 100 110 120 130 140 150 160 170 180 pF1KE4 QGIPVLVLGNKRDLPGALDEKELIEKMNLSAIQDREICCYSISCKEKDNIDITLQWLIQH :::::::::::::::.:::::.:::::::::::::::::::::::::::::::::::::: CCDS25 QGIPVLVLGNKRDLPNALDEKQLIEKMNLSAIQDREICCYSISCKEKDNIDITLQWLIQH 130 140 150 160 170 180 pF1KE4 SKSRRS :::::: CCDS25 SKSRRS >>CCDS73004.1 ARL8A gene_id:127829|Hs108|chr1 (147 aa) initn: 834 init1: 834 opt: 836 Z-score: 945.9 bits: 181.3 E(32554): 2.3e-46 Smith-Waterman score: 836; 94.8% identity (95.6% similar) in 135 aa overlap (1-134:1-135) 10 20 30 40 50 60 pF1KE4 MIALFNKLLDWFKALFWKEEMELTLVGLQYSGKTTFVNVIASGQFNEDMIPTVGFNMRKI :::::::::::::::::::::::::::::::::::::::::::::::::::::::::::: CCDS73 MIALFNKLLDWFKALFWKEEMELTLVGLQYSGKTTFVNVIASGQFNEDMIPTVGFNMRKI 10 20 30 40 50 60 70 80 90 100 110 120 pF1KE4 TKGNVTIKLWDIGGQPRFRSMWERYCRGVSAIVYMVDAADQEKIEASKNELHNLLDKPQL :::::::::::::::::::::::::::::::::::::::::::::::::::::::::::: CCDS73 TKGNVTIKLWDIGGQPRFRSMWERYCRGVSAIVYMVDAADQEKIEASKNELHNLLDKPQL 70 80 90 100 110 120 130 140 150 160 170 pF1KE4 QGIPVLVLG-NKRDLPGALDEKELIEKMNLSAIQDREICCYSISCKEKDNIDITLQWLIQ :::: : . ::: CCDS73 QGIPESVCHPGPRDLLLLHLLQRKGQH 130 140 >>CCDS9695.1 ARF6 gene_id:382|Hs108|chr14 (175 aa) initn: 403 init1: 346 opt: 402 Z-score: 462.2 bits: 92.1 E(32554): 2e-19 Smith-Waterman score: 402; 35.3% identity (72.4% similar) in 170 aa overlap (15-183:8-175) 10 20 30 40 50 60 pF1KE4 MIALFNKLLDWFKALFWKEEMELTLVGLQYSGKTTFVNVIASGQFNEDMIPTVGFNMRKI .: ..::.. ..::. .::::.. . :: . :::::::.. . CCDS96 MGKVLSKIFGNKEMRILMLGLDAAGKTTILYKLKLGQ-SVTTIPTVGFNVETV 10 20 30 40 50 70 80 90 100 110 120 pF1KE4 TKGNVTIKLWDIGGQPRFRSMWERYCRGVSAIVYMVDAADQEKIEASKNELHNLLDKPQL : :: ...::.::: ..: .:..: :.......:: ::...:. ...::: ... .. CCDS96 TYKNVKFNVWDVGGQDKIRPLWRHYYTGTQGLIFVVDCADRDRIDEARQELHRIINDREM 60 70 80 90 100 110 130 140 150 160 170 pF1KE4 QGIPVLVLGNKRDLPGALDEKELIEKMNLSAIQDREICCYSISCKEK-DNIDITLQWLIQ . .:...::.::: :. .:. ::..:. :.::. :: . :.. : :: . CCDS96 RDAIILIFANKQDLPDAMKPHEIQEKLGLTRIRDRNWYVQP-SCATSGDGLYEGLTWLTS 120 130 140 150 160 170 180 pF1KE4 HSKSRRS . :: CCDS96 NYKS >>CCDS1565.1 ARF1 gene_id:375|Hs108|chr1 (181 aa) initn: 391 init1: 309 opt: 391 Z-score: 449.7 bits: 89.8 E(32554): 9.9e-19 Smith-Waterman score: 391; 30.6% identity (71.7% similar) in 180 aa overlap (6-185:3-181) 10 20 30 40 50 60 pF1KE4 MIALFNKLLDWFKALFWKEEMELTLVGLQYSGKTTFVNVIASGQFNEDMIPTVGFNMRKI : . . ::.:: :.::.. .:::. .::::.. . :.. :::.:::.. . CCDS15 MGNIFANLFKGLFGKKEMRILMVGLDAAGKTTILYKLKLGEIVTT-IPTIGFNVETV 10 20 30 40 50 70 80 90 100 110 120 pF1KE4 TKGNVTIKLWDIGGQPRFRSMWERYCRGVSAIVYMVDAADQEKIEASKNELHNLLDKPQL :... .::.::: ..: .:..: .........::. :.:... ...:: .: . .: CCDS15 EYKNISFTVWDVGGQDKIRPLWRHYFQNTQGLIFVVDSNDRERVNEAREELMRMLAEDEL 60 70 80 90 100 110 130 140 150 160 170 180 pF1KE4 QGIPVLVLGNKRDLPGALDEKELIEKMNLSAIQDREICCYSISCKEKDNIDITLQWLIQH . .::..::.:::.:.. :. .:..: ... :. . :.. :.:: .. CCDS15 RDAVLLVFANKQDLPNAMNAAEITDKLGLHSLRHRNWYIQATCATSGDGLYEGLDWLSNQ 120 130 140 150 160 170 pF1KE4 SKSRRS .... CCDS15 LRNQK 180 >>CCDS44958.1 ARL1 gene_id:400|Hs108|chr12 (181 aa) initn: 380 init1: 332 opt: 389 Z-score: 447.5 bits: 89.4 E(32554): 1.3e-18 Smith-Waterman score: 389; 32.8% identity (71.8% similar) in 174 aa overlap (12-185:9-181) 10 20 30 40 50 60 pF1KE4 MIALFNKLLDWFKALFWKEEMELTLVGLQYSGKTTFVNVIASGQFNEDMIPTVGFNMRKI :..:: .::.. ..::. .::::.. . :. :::.:::.. . CCDS44 MGGFFSSIFSSLFGTREMRILILGLDGAGKTTILYRLQVGEVVTT-IPTIGFNVETV 10 20 30 40 50 70 80 90 100 110 120 pF1KE4 TKGNVTIKLWDIGGQPRFRSMWERYCRGVSAIVYMVDAADQEKIEASKNELHNLLDKPQL : :. ...::.::: .: .:. : ...:..:.::. :...: ::.:: .:.. .: CCDS44 TYKNLKFQVWDLGGQTSIRPYWRCYYSNTDAVIYVVDSCDRDRIGISKSELVAMLEEEEL 60 70 80 90 100 110 130 140 150 160 170 180 pF1KE4 QGIPVLVLGNKRDLPGALDEKELIEKMNLSAIQDREICCYSISCKEKDNIDITLQWLIQH . ..:..::.:. :. .:. ....: :..::. .. : . ..: ...::.. CCDS44 RKAILVVFANKQDMEQAMTSSEMANSLGLPALKDRKWQIFKTSATKGTGLDEAMEWLVET 120 130 140 150 160 170 pF1KE4 SKSRRS :::. CCDS44 LKSRQ 180 >>CCDS8774.1 ARF3 gene_id:377|Hs108|chr12 (181 aa) initn: 384 init1: 319 opt: 386 Z-score: 444.2 bits: 88.8 E(32554): 2e-18 Smith-Waterman score: 386; 30.8% identity (71.4% similar) in 185 aa overlap (1-185:1-181) 10 20 30 40 50 60 pF1KE4 MIALFNKLLDWFKALFWKEEMELTLVGLQYSGKTTFVNVIASGQFNEDMIPTVGFNMRKI : .:..:: :.:. :.::.. .:::. .::::.. . :.. :::.:::.. . CCDS87 MGNIFGNLL---KSLIGKKEMRILMVGLDAAGKTTILYKLKLGEIVTT-IPTIGFNVETV 10 20 30 40 50 70 80 90 100 110 120 pF1KE4 TKGNVTIKLWDIGGQPRFRSMWERYCRGVSAIVYMVDAADQEKIEASKNELHNLLDKPQL :... .::.::: ..: .:..: .........::. :.:... ...:: .: . .: CCDS87 EYKNISFTVWDVGGQDKIRPLWRHYFQNTQGLIFVVDSNDRERVNEAREELMRMLAEDEL 60 70 80 90 100 110 130 140 150 160 170 180 pF1KE4 QGIPVLVLGNKRDLPGALDEKELIEKMNLSAIQDREICCYSISCKEKDNIDITLQWLIQH . .::..::.:::.:.. :. .:..: ... :. . :.. :.:: .. CCDS87 RDAVLLVFANKQDLPNAMNAAEITDKLGLHSLRHRNWYIQATCATSGDGLYEGLDWLANQ 120 130 140 150 160 170 pF1KE4 SKSRRS :... CCDS87 LKNKK 180 >>CCDS34745.1 ARF5 gene_id:381|Hs108|chr7 (180 aa) initn: 333 init1: 305 opt: 375 Z-score: 432.0 bits: 86.5 E(32554): 9.7e-18 Smith-Waterman score: 375; 31.0% identity (71.8% similar) in 174 aa overlap (12-185:9-180) 10 20 30 40 50 60 pF1KE4 MIALFNKLLDWFKALFWKEEMELTLVGLQYSGKTTFVNVIASGQFNEDMIPTVGFNMRKI :. .: :..:.. .:::. .::::.. . :.. :::.:::.. . CCDS34 MGLTVSALFSRIFGKKQMRILMVGLDAAGKTTILYKLKLGEIVTT-IPTIGFNVETV 10 20 30 40 50 70 80 90 100 110 120 pF1KE4 TKGNVTIKLWDIGGQPRFRSMWERYCRGVSAIVYMVDAADQEKIEASKNELHNLLDKPQL :. . .::.::: ..: .:..: .........::. :.:... : .::...:.. .: CCDS34 EYKNICFTVWDVGGQDKIRPLWRHYFQNTQGLIFVVDSNDRERVQESADELQKMLQEDEL 60 70 80 90 100 110 130 140 150 160 170 180 pF1KE4 QGIPVLVLGNKRDLPGALDEKELIEKMNLSAIQDREICCYSISCKEKDNIDITLQWLIQH . .::..::.:.:.:. .:: .:..:. ...: . . .. :.:: .: CCDS34 RDAVLLVFANKQDMPNAMPVSELTDKLGLQHLRSRTWYVQATCATQGTGLYDGLDWL-SH 120 130 140 150 160 170 pF1KE4 SKSRRS :.: CCDS34 ELSKR 180 >>CCDS8088.1 ARL2 gene_id:402|Hs108|chr11 (184 aa) initn: 341 init1: 318 opt: 367 Z-score: 422.9 bits: 84.9 E(32554): 3.1e-17 Smith-Waterman score: 367; 32.0% identity (73.0% similar) in 178 aa overlap (8-184:3-179) 10 20 30 40 50 pF1KE4 MIALFNKLLDWFKALFWKE-EMELTLVGLQYSGKTTFVNVIASGQFNEDMIPTVGFNMRK :: .: . :: :..: ..::. .::::... . .:. . . ::.:::.. CCDS80 MGLLTILKKMKQKERELRLLMLGLDNAGKTTILKKF-NGEDIDTISPTLGFNIKT 10 20 30 40 50 60 70 80 90 100 110 pF1KE4 ITKGNVTIKLWDIGGQPRFRSMWERYCRGVSAIVYMVDAADQEKIEASKNELHNLLDKPQ . . . ...::.::: .::.:. : .........::.::..... . ::..:: . . CCDS80 LEHRGFKLNIWDVGGQKSLRSYWRNYFESTDGLIWVVDSADRQRMQDCQRELQSLLVEER 60 70 80 90 100 110 120 130 140 150 160 170 pF1KE4 LQGIPVLVLGNKRDLPGALDEKELIEKMNLSAIQDREICCYSISCKEKDNIDITLQWLIQ : : .:...::.::::::. . . : ..:..:.... : . : .:. ..::.. CCDS80 LAGATLLIFANKQDLPGALSSNAIREVLELDSIRSHHWCIQGCSAVTGENLLPGIDWLLD 120 130 140 150 160 170 180 pF1KE4 HSKSRRS .:: CCDS80 DISSRIFTAD 180 >>CCDS2925.1 ARL13B gene_id:200894|Hs108|chr3 (428 aa) initn: 353 init1: 305 opt: 369 Z-score: 420.1 bits: 85.6 E(32554): 4.4e-17 Smith-Waterman score: 374; 33.5% identity (67.5% similar) in 191 aa overlap (1-179:1-188) 10 20 30 40 50 pF1KE4 MIALFNKLLDWFKALFWKE---EMELTLVGLQYSGKTTFVNVIASGQFNEDMIPTVGFNM :..:. . ::: :.: .. : .:::. .:::. .. : .:.. ::. :::::. CCDS29 MFSLMASCCGWFKR--WREPVRKVTLLMVGLDNAGKTATAKGI-QGEYPEDVAPTVGFSK 10 20 30 40 50 60 70 80 90 100 110 pF1KE4 RKITKGNVTIKLWDIGGQPRFRSMWERYCRGVSAIVYMVDAADQEKIEASKNELHNLLDK .. .:. . ..:.:: :.:..:. : .....::..:.:..: .:. . ..: . CCDS29 INLRQGKFEVTIFDLGGGIRIRGIWKNYYAESYGVIFVVDSSDEERMEETKEAMSEMLRH 60 70 80 90 100 110 120 130 140 150 160 pF1KE4 PQLQGIPVLVLGNKRDLPGALDEKELIEKMNLSAIQDREIC------CYSISC--KEKD- :...: :.:::.::.: ::: : ..:: ..: . ... : : .:: :. : CCDS29 PRISGKPILVLANKQDKEGALGEADVIECLSLEKLVNEHKCLCQIEPCSAISGYGKKIDK 120 130 140 150 160 170 170 180 pF1KE4 NIDITLQWLIQHSKSRRS .: : ::.. CCDS29 SIKKGLYWLLHVIARDFDALNERIQKETTEQRALEEQEKQERAERVRKLREERKQNEQEQ 180 190 200 210 220 230 186 residues in 1 query sequences 18511270 residues in 32554 library sequences Tcomplib [36.3.4 Apr, 2011] (8 proc) start: Sun Nov 6 05:21:58 2016 done: Sun Nov 6 05:21:58 2016 Total Scan time: 1.900 Total Display time: -0.010 Function used was FASTA [36.3.4 Apr, 2011]