Result of FASTA (omim) for
pFN21AE1607
FASTA searches a protein or DNA sequence data bank 36.3.4 Apr, 2011
Please cite:
W.R. Pearson & D.J. Lipman PNAS (1988) 85:2444-2448
Query: pF1KE1607, 114 aa
1>>>pF1KE1607 114 - 114 aa - 114 aa
Library: /omim/omim.rfq.tfa
60827320 residues in 85289 sequences
Statistics: Expectation_n fit: rho(ln(x))= 4.6122+/-0.000365; mu= 13.3565+/- 0.023
mean_var=54.2779+/-11.022, 0's: 0 Z-trim(110.8): 65 B-trim: 157 in 1/50
Lambda= 0.174086
statistics sampled from 19218 (19289) to 19218 sequences
Algorithm: FASTA (3.7 Nov 2010) [optimized]
Parameters: BL50 matrix (15:-5), open/ext: -10/-2
ktup: 2, E-join: 1 (0.625), E-opt: 0.2 (0.226), width: 16
Scan time: 4.360
The best scores are: opt bits E(85289)
NP_003166 (OMIM: 604828) cytokine SCM-1 beta precu ( 114) 717 187.9 3.1e-48
XP_011508167 (OMIM: 600250) PREDICTED: lymphotacti ( 114) 702 184.1 4.2e-47
NP_002986 (OMIM: 600250) lymphotactin precursor [H ( 114) 702 184.1 4.2e-47
NP_002982 (OMIM: 602495) C-C motif chemokine 24 pr ( 119) 176 52.0 2.5e-07
XP_011514762 (OMIM: 602495) PREDICTED: C-C motif c ( 119) 176 52.0 2.5e-07
XP_011514761 (OMIM: 602495) PREDICTED: C-C motif c ( 119) 176 52.0 2.5e-07
NP_005614 (OMIM: 602283) C-C motif chemokine 8 pre ( 99) 170 50.5 6.2e-07
NP_002977 (OMIM: 600807,601156,609423) eotaxin pre ( 97) 169 50.2 7.3e-07
NP_005399 (OMIM: 601391) C-C motif chemokine 13 pr ( 98) 166 49.5 1.2e-06
NP_116738 (OMIM: 601392) C-C motif chemokine 14 is ( 109) 158 47.5 5.4e-06
NP_996890 (OMIM: 603782) C-C motif chemokine 4-lik ( 92) 155 46.7 8e-06
NP_116739 (OMIM: 601392) C-C motif chemokine 14 is ( 93) 155 46.7 8.1e-06
NP_006264 (OMIM: 158106) C-C motif chemokine 7 pre ( 99) 154 46.4 1e-05
NP_002976 (OMIM: 187011) C-C motif chemokine 5 iso ( 91) 151 45.7 1.6e-05
NP_006063 (OMIM: 604697) C-C motif chemokine 26 pr ( 94) 150 45.4 1.9e-05
XP_016867161 (OMIM: 604697) PREDICTED: C-C motif c ( 94) 150 45.4 1.9e-05
XP_016867160 (OMIM: 604697) PREDICTED: C-C motif c ( 148) 150 45.5 2.8e-05
NP_066286 (OMIM: 601395,609423) C-C motif chemokin ( 93) 144 43.9 5.5e-05
NP_001001437 (OMIM: 609468) C-C motif chemokine 3- ( 93) 144 43.9 5.5e-05
NP_002987 (OMIM: 601880) fractalkine isoform 1 pre ( 397) 147 45.1 0.0001
NP_002975 (OMIM: 182284) C-C motif chemokine 4 pre ( 92) 138 42.4 0.00015
NP_001123518 (OMIM: 601960) C-C motif chemokine 20 ( 95) 138 42.4 0.00016
NP_004582 (OMIM: 601960) C-C motif chemokine 20 is ( 96) 137 42.2 0.00019
NP_116741 (OMIM: 601393) C-C motif chemokine 15 pr ( 113) 136 42.0 0.00026
NP_002974 (OMIM: 182283,609423) C-C motif chemokin ( 92) 135 41.6 0.00026
NP_002973 (OMIM: 158105,182940,607948,609423) C-C ( 99) 134 41.4 0.00033
NP_005055 (OMIM: 602494) C-C motif chemokine 23 is ( 137) 135 41.8 0.00036
NP_665905 (OMIM: 602494) C-C motif chemokine 23 is ( 120) 134 41.5 0.00038
NP_002979 (OMIM: 603757) C-C motif chemokine 18 pr ( 89) 130 40.4 0.0006
NP_002978 (OMIM: 601520) C-C motif chemokine 17 pr ( 94) 128 39.9 0.00089
NP_006265 (OMIM: 602227) C-C motif chemokine 19 pr ( 98) 128 39.9 0.00092
XP_011521558 (OMIM: 601520) PREDICTED: C-C motif c ( 122) 128 40.0 0.0011
XP_016879019 (OMIM: 601520) PREDICTED: C-C motif c ( 123) 128 40.0 0.0011
NP_002980 (OMIM: 602737) C-C motif chemokine 21 pr ( 134) 127 39.7 0.0014
XP_011516306 (OMIM: 602737) PREDICTED: C-C motif c ( 145) 127 39.8 0.0015
NP_002981 (OMIM: 602957) C-C motif chemokine 22 pr ( 93) 124 38.9 0.0018
XP_016879020 (OMIM: 602957) PREDICTED: C-C motif c ( 93) 124 38.9 0.0018
NP_006410 (OMIM: 605149) C-X-C motif chemokine 13 ( 109) 117 37.2 0.0068
XP_006714126 (OMIM: 605149) PREDICTED: C-X-C motif ( 109) 117 37.2 0.0068
>>NP_003166 (OMIM: 604828) cytokine SCM-1 beta precursor (114 aa)
initn: 717 init1: 717 opt: 717 Z-score: 987.0 bits: 187.9 E(85289): 3.1e-48
Smith-Waterman score: 717; 100.0% identity (100.0% similar) in 114 aa overlap (1-114:1-114)
10 20 30 40 50 60
pF1KE1 MRLLILALLGICSLTAYIVEGVGSEVSHRRTCVSLTTQRLPVSRIKTYTITEGSLRAVIF
::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
NP_003 MRLLILALLGICSLTAYIVEGVGSEVSHRRTCVSLTTQRLPVSRIKTYTITEGSLRAVIF
10 20 30 40 50 60
70 80 90 100 110
pF1KE1 ITKRGLKVCADPQATWVRDVVRSMDRKSNTRNNMIQTKPTGTQQSTNTAVTLTG
::::::::::::::::::::::::::::::::::::::::::::::::::::::
NP_003 ITKRGLKVCADPQATWVRDVVRSMDRKSNTRNNMIQTKPTGTQQSTNTAVTLTG
70 80 90 100 110
>>XP_011508167 (OMIM: 600250) PREDICTED: lymphotactin is (114 aa)
initn: 702 init1: 702 opt: 702 Z-score: 966.7 bits: 184.1 E(85289): 4.2e-47
Smith-Waterman score: 702; 98.2% identity (99.1% similar) in 114 aa overlap (1-114:1-114)
10 20 30 40 50 60
pF1KE1 MRLLILALLGICSLTAYIVEGVGSEVSHRRTCVSLTTQRLPVSRIKTYTITEGSLRAVIF
::::::::::::::::::::::::::: .:::::::::::::::::::::::::::::::
XP_011 MRLLILALLGICSLTAYIVEGVGSEVSDKRTCVSLTTQRLPVSRIKTYTITEGSLRAVIF
10 20 30 40 50 60
70 80 90 100 110
pF1KE1 ITKRGLKVCADPQATWVRDVVRSMDRKSNTRNNMIQTKPTGTQQSTNTAVTLTG
::::::::::::::::::::::::::::::::::::::::::::::::::::::
XP_011 ITKRGLKVCADPQATWVRDVVRSMDRKSNTRNNMIQTKPTGTQQSTNTAVTLTG
70 80 90 100 110
>>NP_002986 (OMIM: 600250) lymphotactin precursor [Homo (114 aa)
initn: 702 init1: 702 opt: 702 Z-score: 966.7 bits: 184.1 E(85289): 4.2e-47
Smith-Waterman score: 702; 98.2% identity (99.1% similar) in 114 aa overlap (1-114:1-114)
10 20 30 40 50 60
pF1KE1 MRLLILALLGICSLTAYIVEGVGSEVSHRRTCVSLTTQRLPVSRIKTYTITEGSLRAVIF
::::::::::::::::::::::::::: .:::::::::::::::::::::::::::::::
NP_002 MRLLILALLGICSLTAYIVEGVGSEVSDKRTCVSLTTQRLPVSRIKTYTITEGSLRAVIF
10 20 30 40 50 60
70 80 90 100 110
pF1KE1 ITKRGLKVCADPQATWVRDVVRSMDRKSNTRNNMIQTKPTGTQQSTNTAVTLTG
::::::::::::::::::::::::::::::::::::::::::::::::::::::
NP_002 ITKRGLKVCADPQATWVRDVVRSMDRKSNTRNNMIQTKPTGTQQSTNTAVTLTG
70 80 90 100 110
>>NP_002982 (OMIM: 602495) C-C motif chemokine 24 precur (119 aa)
initn: 119 init1: 107 opt: 176 Z-score: 252.4 bits: 52.0 E(85289): 2.5e-07
Smith-Waterman score: 176; 31.3% identity (62.6% similar) in 99 aa overlap (6-98:11-106)
10 20 30 40 50
pF1KE1 MRLLILALLGICSLTAYIVEGVGSEVSHRRTCVSLTTQRLPVSRIKTYTITEGS-
: .::.: :. . .:: : :. ....:.: .:. .: .. :
NP_002 MAGLMTIVTSLLFLGVC---AHHIIPTGSVVIPSPCCMFFVSKRIPENRVVSYQLSSRST
10 20 30 40 50
60 70 80 90 100
pF1KE1 -LRA-VIFITKRGLKVCADPQATWVRDVVRSMD---RKSNTRNNMIQTKPTGTQQSTNTA
:.: ::: ::.: . :.::. ::. ....: .:.. : . .:
NP_002 CLKAGVIFTTKKGQQFCGDPKQEWVQRYMKNLDAKQKKASPRARAVAVKGPVQRYPGNQT
60 70 80 90 100 110
110
pF1KE1 VTLTG
NP_002 TC
>>XP_011514762 (OMIM: 602495) PREDICTED: C-C motif chemo (119 aa)
initn: 119 init1: 107 opt: 176 Z-score: 252.4 bits: 52.0 E(85289): 2.5e-07
Smith-Waterman score: 176; 31.3% identity (62.6% similar) in 99 aa overlap (6-98:11-106)
10 20 30 40 50
pF1KE1 MRLLILALLGICSLTAYIVEGVGSEVSHRRTCVSLTTQRLPVSRIKTYTITEGS-
: .::.: :. . .:: : :. ....:.: .:. .: .. :
XP_011 MAGLMTIVTSLLFLGVC---AHHIIPTGSVVIPSPCCMFFVSKRIPENRVVSYQLSSRST
10 20 30 40 50
60 70 80 90 100
pF1KE1 -LRA-VIFITKRGLKVCADPQATWVRDVVRSMD---RKSNTRNNMIQTKPTGTQQSTNTA
:.: ::: ::.: . :.::. ::. ....: .:.. : . .:
XP_011 CLKAGVIFTTKKGQQFCGDPKQEWVQRYMKNLDAKQKKASPRARAVAVKGPVQRYPGNQT
60 70 80 90 100 110
110
pF1KE1 VTLTG
XP_011 TC
>>XP_011514761 (OMIM: 602495) PREDICTED: C-C motif chemo (119 aa)
initn: 119 init1: 107 opt: 176 Z-score: 252.4 bits: 52.0 E(85289): 2.5e-07
Smith-Waterman score: 176; 31.3% identity (62.6% similar) in 99 aa overlap (6-98:11-106)
10 20 30 40 50
pF1KE1 MRLLILALLGICSLTAYIVEGVGSEVSHRRTCVSLTTQRLPVSRIKTYTITEGS-
: .::.: :. . .:: : :. ....:.: .:. .: .. :
XP_011 MAGLMTIVTSLLFLGVC---AHHIIPTGSVVIPSPCCMFFVSKRIPENRVVSYQLSSRST
10 20 30 40 50
60 70 80 90 100
pF1KE1 -LRA-VIFITKRGLKVCADPQATWVRDVVRSMD---RKSNTRNNMIQTKPTGTQQSTNTA
:.: ::: ::.: . :.::. ::. ....: .:.. : . .:
XP_011 CLKAGVIFTTKKGQQFCGDPKQEWVQRYMKNLDAKQKKASPRARAVAVKGPVQRYPGNQT
60 70 80 90 100 110
110
pF1KE1 VTLTG
XP_011 TC
>>NP_005614 (OMIM: 602283) C-C motif chemokine 8 precurs (99 aa)
initn: 177 init1: 133 opt: 170 Z-score: 245.4 bits: 50.5 E(85289): 6.2e-07
Smith-Waterman score: 170; 43.1% identity (75.9% similar) in 58 aa overlap (32-86:35-92)
10 20 30 40 50
pF1KE1 RLLILALLGICSLTAYIVEGVGSEVSHRRTCVSLTTQRLPVSRIKTYT-IT--EGSLRAV
: .. ....:..:...:: :: . .::
NP_005 AALLCLLLMAATFSPQGLAQPDSVSIPITCCFNVINRKIPIQRLESYTRITNIQCPKEAV
10 20 30 40 50 60
60 70 80 90 100 110
pF1KE1 IFITKRGLKVCADPQATWVRDVVRSMDRKSNTRNNMIQTKPTGTQQSTNTAVTLTG
:: :::: .:::::. :::: .. .:.
NP_005 IFKTKRGKEVCADPKERWVRDSMKHLDQIFQNLKP
70 80 90
>>NP_002977 (OMIM: 600807,601156,609423) eotaxin precurs (97 aa)
initn: 119 init1: 119 opt: 169 Z-score: 244.2 bits: 50.2 E(85289): 7.3e-07
Smith-Waterman score: 169; 36.7% identity (68.9% similar) in 90 aa overlap (5-90:7-94)
10 20 30 40 50
pF1KE1 MRLLILALLGICSLTAYIVEGVGSEVSHRRTCV-SLTTQRLPVSRIKTYT-ITEGSL-
.: :: : . :. .:... .: :: .:.....:..:...: :: :.
NP_002 MKVSAALLWLLLIAA--AFSPQGLAGPASVPTTCCFNLANRKIPLQRLESYRRITSGKCP
10 20 30 40 50
60 70 80 90 100 110
pF1KE1 -RAVIFITKRGLKVCADPQATWVRDVVRSMDRKSNTRNNMIQTKPTGTQQSTNTAVTLTG
.:::: :: . .::::. ::.: .. .:.:: :
NP_002 QKAVIFKTKLAKDICADPKKKWVQDSMKYLDQKSPTPKP
60 70 80 90
>>NP_005399 (OMIM: 601391) C-C motif chemokine 13 precur (98 aa)
initn: 128 init1: 120 opt: 166 Z-score: 240.1 bits: 49.5 E(85289): 1.2e-06
Smith-Waterman score: 166; 36.1% identity (75.4% similar) in 61 aa overlap (32-90:35-95)
10 20 30 40 50
pF1KE1 RLLILALLGICSLTAYIVEGVGSEVSHRRTCVSLTTQRLPVSRIKTYTITEGSL--RAVI
: ....... ..:.:.:.:: . .:::
NP_005 AVLLCLLLMTAAFNPQGLAQPDALNVPSTCCFTFSSKKISLQRLKSYVITTSRCPQKAVI
10 20 30 40 50 60
60 70 80 90 100 110
pF1KE1 FITKRGLKVCADPQATWVRDVVRSMDRKSNTRNNMIQTKPTGTQQSTNTAVTLTG
: :: : ..::::. ::.. .. . ::..:
NP_005 FRTKLGKEICADPKEKWVQNYMKHLGRKAHTLKT
70 80 90
>>NP_116738 (OMIM: 601392) C-C motif chemokine 14 isofor (109 aa)
initn: 169 init1: 105 opt: 158 Z-score: 228.6 bits: 47.5 E(85289): 5.4e-06
Smith-Waterman score: 158; 36.9% identity (66.2% similar) in 65 aa overlap (22-84:42-106)
10 20 30 40
pF1KE1 MRLLILALLGICSLTAYIVEGVGSEVSHRRTCVSLTTQRLPVSRIKTY--T
::. . : . :: ..: .:: : :
NP_116 LLITIALGTKTESSSQTGGKPKVVKIQLKLVGGPYHPSECCFTYTTYKIPRQRIMDYYET
20 30 40 50 60 70
50 60 70 80 90 100
pF1KE1 ITEGSLRAVIFITKRGLKVCADPQATWVRDVVRSMDRKSNTRNNMIQTKPTGTQQSTNTA
.. : ...:::::: .::..:. ::.: ...:
NP_116 NSQCSKPGIVFITKRGHSVCTNPSDKWVQDYIKDMKEN
80 90 100
110
pF1KE1 VTLTG
114 residues in 1 query sequences
60827320 residues in 85289 library sequences
Tcomplib [36.3.4 Apr, 2011] (8 proc)
start: Sun Nov 6 18:47:45 2016 done: Sun Nov 6 18:47:46 2016
Total Scan time: 4.360 Total Display time: -0.010
Function used was FASTA [36.3.4 Apr, 2011]