FASTA searches a protein or DNA sequence data bank 36.3.4 Apr, 2011 Please cite: W.R. Pearson & D.J. Lipman PNAS (1988) 85:2444-2448 Query: pF1KE1822, 335 aa 1>>>pF1KE1822 335 - 335 aa - 335 aa Library: /omim/omim.rfq.tfa 60827320 residues in 85289 sequences Statistics: Expectation_n fit: rho(ln(x))= 4.7767+/-0.000339; mu= 19.6406+/- 0.021 mean_var=71.1118+/-14.557, 0's: 0 Z-trim(116.1): 140 B-trim: 1827 in 2/52 Lambda= 0.152091 statistics sampled from 26822 (26977) to 26822 sequences Algorithm: FASTA (3.7 Nov 2010) [optimized] Parameters: BL50 matrix (15:-5), open/ext: -10/-2 ktup: 2, E-join: 1 (0.694), E-opt: 0.2 (0.316), width: 16 Scan time: 8.200 The best scores are: opt bits E(85289) XP_011508427 (OMIM: 188410) PREDICTED: antigen-pre ( 335) 2320 517.9 1.2e-146 NP_001757 (OMIM: 188410) antigen-presenting glycop ( 335) 2320 517.9 1.2e-146 XP_005245640 (OMIM: 188410) PREDICTED: antigen-pre ( 231) 1592 358.0 1.1e-98 XP_011508429 (OMIM: 188410) PREDICTED: antigen-pre ( 231) 1592 358.0 1.1e-98 XP_006711684 (OMIM: 188410) PREDICTED: antigen-pre ( 231) 1592 358.0 1.1e-98 NP_001306074 (OMIM: 188410) antigen-presenting gly ( 242) 1402 316.4 4e-86 NP_112155 (OMIM: 188411) T-cell surface glycoprote ( 388) 1226 277.9 2.4e-74 NP_001036048 (OMIM: 188411) T-cell surface glycopr ( 376) 1212 274.8 2e-73 NP_001754 (OMIM: 188370) T-cell surface glycoprote ( 327) 1165 264.5 2.3e-70 NP_001307581 (OMIM: 188370) T-cell surface glycopr ( 316) 1147 260.5 3.4e-69 NP_001755 (OMIM: 188360) T-cell surface glycoprote ( 333) 1143 259.7 6.5e-69 NP_001756 (OMIM: 188340) T-cell surface glycoprote ( 333) 1098 249.8 6.1e-66 XP_005245636 (OMIM: 188340) PREDICTED: T-cell surf ( 346) 1034 235.8 1.1e-61 XP_011508436 (OMIM: 188411) PREDICTED: T-cell surf ( 290) 962 219.9 5.3e-57 NP_001036049 (OMIM: 188411) T-cell surface glycopr ( 290) 962 219.9 5.3e-57 NP_001172043 (OMIM: 188411) T-cell surface glycopr ( 289) 939 214.8 1.7e-55 NP_001036050 (OMIM: 188411) T-cell surface glycopr ( 321) 833 191.6 1.9e-48 XP_011508435 (OMIM: 188411) PREDICTED: T-cell surf ( 333) 833 191.6 1.9e-48 XP_011508421 (OMIM: 188360) PREDICTED: T-cell surf ( 278) 780 179.9 5.4e-45 NP_001172036 (OMIM: 188411) T-cell surface glycopr ( 298) 674 156.7 5.7e-38 NP_001172041 (OMIM: 188411) T-cell surface glycopr ( 199) 663 154.1 2.3e-37 NP_001172044 (OMIM: 188411) T-cell surface glycopr ( 286) 660 153.6 4.7e-37 NP_001036051 (OMIM: 188411) T-cell surface glycopr ( 187) 649 151.0 1.8e-36 XP_016858274 (OMIM: 188360) PREDICTED: T-cell surf ( 239) 498 118.0 2e-26 XP_016858275 (OMIM: 188360) PREDICTED: T-cell surf ( 220) 497 117.8 2.2e-26 XP_016858273 (OMIM: 188360) PREDICTED: T-cell surf ( 269) 497 117.8 2.6e-26 NP_001036052 (OMIM: 188411) T-cell surface glycopr ( 101) 399 95.9 3.8e-20 NP_001287678 (OMIM: 104300,176100,176200,235200,61 ( 337) 342 83.9 5.3e-16 XP_011512845 (OMIM: 104300,176100,176200,235200,61 ( 348) 342 83.9 5.4e-16 NP_000401 (OMIM: 104300,176100,176200,235200,61263 ( 348) 342 83.9 5.4e-16 NP_620578 (OMIM: 104300,176100,176200,235200,61263 ( 325) 340 83.5 7e-16 NP_001522 (OMIM: 600764) major histocompatibility ( 341) 329 81.1 3.9e-15 NP_004098 (OMIM: 601437) IgG receptor FcRn large s ( 365) 308 76.5 9.9e-14 NP_001129491 (OMIM: 601437) IgG receptor FcRn larg ( 365) 308 76.5 9.9e-14 NP_001176 (OMIM: 194460) zinc-alpha-2-glycoprotein ( 298) 303 75.3 1.8e-13 NP_620576 (OMIM: 104300,176100,176200,235200,61263 ( 260) 299 74.4 3e-13 NP_001172037 (OMIM: 188411) T-cell surface glycopr ( 231) 292 72.8 8.1e-13 NP_005505 (OMIM: 106300,142830,608579) major histo ( 362) 282 70.8 5.1e-12 XP_011512859 (OMIM: 106300,142830,608579) PREDICTE ( 323) 276 69.4 1.2e-11 NP_001172039 (OMIM: 188411) T-cell surface glycopr ( 132) 270 67.7 1.5e-11 NP_001172042 (OMIM: 188411) T-cell surface glycopr ( 144) 270 67.8 1.6e-11 XP_011507765 (OMIM: 600764) PREDICTED: major histo ( 254) 272 68.4 1.8e-11 NP_002108 (OMIM: 142840,177900,609423) HLA class I ( 366) 262 66.4 1.1e-10 XP_016866300 (OMIM: 143110) PREDICTED: HLA class I ( 431) 261 66.2 1.4e-10 NP_005507 (OMIM: 143010) HLA class I histocompatib ( 358) 260 65.9 1.4e-10 XP_016866298 (OMIM: 143010) PREDICTED: HLA class I ( 359) 260 65.9 1.4e-10 NP_001229971 (OMIM: 142840,177900,609423) HLA clas ( 366) 260 66.0 1.5e-10 NP_002107 (OMIM: 142800,608579) HLA class I histoc ( 365) 258 65.5 2e-10 NP_001229687 (OMIM: 142800,608579) HLA class I his ( 365) 254 64.6 3.6e-10 XP_011512866 (OMIM: 143110) PREDICTED: HLA class I ( 343) 251 63.9 5.5e-10 >>XP_011508427 (OMIM: 188410) PREDICTED: antigen-present (335 aa) initn: 2320 init1: 2320 opt: 2320 Z-score: 2753.9 bits: 517.9 E(85289): 1.2e-146 Smith-Waterman score: 2320; 100.0% identity (100.0% similar) in 335 aa overlap (1-335:1-335) 10 20 30 40 50 60 pF1KE1 MGCLLFLLLWALLQAWGSAEVPQRLFPLRCLQISSFANSSWTRTDGLAWLGELQTHSWSN :::::::::::::::::::::::::::::::::::::::::::::::::::::::::::: XP_011 MGCLLFLLLWALLQAWGSAEVPQRLFPLRCLQISSFANSSWTRTDGLAWLGELQTHSWSN 10 20 30 40 50 60 70 80 90 100 110 120 pF1KE1 DSDTVRSLKPWSQGTFSDQQWETLQHIFRVYRSSFTRDVKEFAKMLRLSYPLELQVSAGC :::::::::::::::::::::::::::::::::::::::::::::::::::::::::::: XP_011 DSDTVRSLKPWSQGTFSDQQWETLQHIFRVYRSSFTRDVKEFAKMLRLSYPLELQVSAGC 70 80 90 100 110 120 130 140 150 160 170 180 pF1KE1 EVHPGNASNNFFHVAFQGKDILSFQGTSWEPTQEAPLWVNLAIQVLNQDKWTRETVQWLL :::::::::::::::::::::::::::::::::::::::::::::::::::::::::::: XP_011 EVHPGNASNNFFHVAFQGKDILSFQGTSWEPTQEAPLWVNLAIQVLNQDKWTRETVQWLL 130 140 150 160 170 180 190 200 210 220 230 240 pF1KE1 NGTCPQFVSGLLESGKSELKKQVKPKAWLSRGPSPGPGRLLLVCHVSGFYPKPVWVKWMR :::::::::::::::::::::::::::::::::::::::::::::::::::::::::::: XP_011 NGTCPQFVSGLLESGKSELKKQVKPKAWLSRGPSPGPGRLLLVCHVSGFYPKPVWVKWMR 190 200 210 220 230 240 250 260 270 280 290 300 pF1KE1 GEQEQQGTQPGDILPNADETWYLRATLDVVAGEAAGLSCRVKHSSLEGQDIVLYWGGSYT :::::::::::::::::::::::::::::::::::::::::::::::::::::::::::: XP_011 GEQEQQGTQPGDILPNADETWYLRATLDVVAGEAAGLSCRVKHSSLEGQDIVLYWGGSYT 250 260 270 280 290 300 310 320 330 pF1KE1 SMGLIALAVLACLLFLLIVGFTSRFKRQTSYQGVL ::::::::::::::::::::::::::::::::::: XP_011 SMGLIALAVLACLLFLLIVGFTSRFKRQTSYQGVL 310 320 330 >>NP_001757 (OMIM: 188410) antigen-presenting glycoprote (335 aa) initn: 2320 init1: 2320 opt: 2320 Z-score: 2753.9 bits: 517.9 E(85289): 1.2e-146 Smith-Waterman score: 2320; 100.0% identity (100.0% similar) in 335 aa overlap (1-335:1-335) 10 20 30 40 50 60 pF1KE1 MGCLLFLLLWALLQAWGSAEVPQRLFPLRCLQISSFANSSWTRTDGLAWLGELQTHSWSN :::::::::::::::::::::::::::::::::::::::::::::::::::::::::::: NP_001 MGCLLFLLLWALLQAWGSAEVPQRLFPLRCLQISSFANSSWTRTDGLAWLGELQTHSWSN 10 20 30 40 50 60 70 80 90 100 110 120 pF1KE1 DSDTVRSLKPWSQGTFSDQQWETLQHIFRVYRSSFTRDVKEFAKMLRLSYPLELQVSAGC :::::::::::::::::::::::::::::::::::::::::::::::::::::::::::: NP_001 DSDTVRSLKPWSQGTFSDQQWETLQHIFRVYRSSFTRDVKEFAKMLRLSYPLELQVSAGC 70 80 90 100 110 120 130 140 150 160 170 180 pF1KE1 EVHPGNASNNFFHVAFQGKDILSFQGTSWEPTQEAPLWVNLAIQVLNQDKWTRETVQWLL :::::::::::::::::::::::::::::::::::::::::::::::::::::::::::: NP_001 EVHPGNASNNFFHVAFQGKDILSFQGTSWEPTQEAPLWVNLAIQVLNQDKWTRETVQWLL 130 140 150 160 170 180 190 200 210 220 230 240 pF1KE1 NGTCPQFVSGLLESGKSELKKQVKPKAWLSRGPSPGPGRLLLVCHVSGFYPKPVWVKWMR :::::::::::::::::::::::::::::::::::::::::::::::::::::::::::: NP_001 NGTCPQFVSGLLESGKSELKKQVKPKAWLSRGPSPGPGRLLLVCHVSGFYPKPVWVKWMR 190 200 210 220 230 240 250 260 270 280 290 300 pF1KE1 GEQEQQGTQPGDILPNADETWYLRATLDVVAGEAAGLSCRVKHSSLEGQDIVLYWGGSYT :::::::::::::::::::::::::::::::::::::::::::::::::::::::::::: NP_001 GEQEQQGTQPGDILPNADETWYLRATLDVVAGEAAGLSCRVKHSSLEGQDIVLYWGGSYT 250 260 270 280 290 300 310 320 330 pF1KE1 SMGLIALAVLACLLFLLIVGFTSRFKRQTSYQGVL ::::::::::::::::::::::::::::::::::: NP_001 SMGLIALAVLACLLFLLIVGFTSRFKRQTSYQGVL 310 320 330 >>XP_005245640 (OMIM: 188410) PREDICTED: antigen-present (231 aa) initn: 1592 init1: 1592 opt: 1592 Z-score: 1892.7 bits: 358.0 E(85289): 1.1e-98 Smith-Waterman score: 1592; 100.0% identity (100.0% similar) in 231 aa overlap (105-335:1-231) 80 90 100 110 120 130 pF1KE1 TFSDQQWETLQHIFRVYRSSFTRDVKEFAKMLRLSYPLELQVSAGCEVHPGNASNNFFHV :::::::::::::::::::::::::::::: XP_005 MLRLSYPLELQVSAGCEVHPGNASNNFFHV 10 20 30 140 150 160 170 180 190 pF1KE1 AFQGKDILSFQGTSWEPTQEAPLWVNLAIQVLNQDKWTRETVQWLLNGTCPQFVSGLLES :::::::::::::::::::::::::::::::::::::::::::::::::::::::::::: XP_005 AFQGKDILSFQGTSWEPTQEAPLWVNLAIQVLNQDKWTRETVQWLLNGTCPQFVSGLLES 40 50 60 70 80 90 200 210 220 230 240 250 pF1KE1 GKSELKKQVKPKAWLSRGPSPGPGRLLLVCHVSGFYPKPVWVKWMRGEQEQQGTQPGDIL :::::::::::::::::::::::::::::::::::::::::::::::::::::::::::: XP_005 GKSELKKQVKPKAWLSRGPSPGPGRLLLVCHVSGFYPKPVWVKWMRGEQEQQGTQPGDIL 100 110 120 130 140 150 260 270 280 290 300 310 pF1KE1 PNADETWYLRATLDVVAGEAAGLSCRVKHSSLEGQDIVLYWGGSYTSMGLIALAVLACLL :::::::::::::::::::::::::::::::::::::::::::::::::::::::::::: XP_005 PNADETWYLRATLDVVAGEAAGLSCRVKHSSLEGQDIVLYWGGSYTSMGLIALAVLACLL 160 170 180 190 200 210 320 330 pF1KE1 FLLIVGFTSRFKRQTSYQGVL ::::::::::::::::::::: XP_005 FLLIVGFTSRFKRQTSYQGVL 220 230 >>XP_011508429 (OMIM: 188410) PREDICTED: antigen-present (231 aa) initn: 1592 init1: 1592 opt: 1592 Z-score: 1892.7 bits: 358.0 E(85289): 1.1e-98 Smith-Waterman score: 1592; 100.0% identity (100.0% similar) in 231 aa overlap (105-335:1-231) 80 90 100 110 120 130 pF1KE1 TFSDQQWETLQHIFRVYRSSFTRDVKEFAKMLRLSYPLELQVSAGCEVHPGNASNNFFHV :::::::::::::::::::::::::::::: XP_011 MLRLSYPLELQVSAGCEVHPGNASNNFFHV 10 20 30 140 150 160 170 180 190 pF1KE1 AFQGKDILSFQGTSWEPTQEAPLWVNLAIQVLNQDKWTRETVQWLLNGTCPQFVSGLLES :::::::::::::::::::::::::::::::::::::::::::::::::::::::::::: XP_011 AFQGKDILSFQGTSWEPTQEAPLWVNLAIQVLNQDKWTRETVQWLLNGTCPQFVSGLLES 40 50 60 70 80 90 200 210 220 230 240 250 pF1KE1 GKSELKKQVKPKAWLSRGPSPGPGRLLLVCHVSGFYPKPVWVKWMRGEQEQQGTQPGDIL :::::::::::::::::::::::::::::::::::::::::::::::::::::::::::: XP_011 GKSELKKQVKPKAWLSRGPSPGPGRLLLVCHVSGFYPKPVWVKWMRGEQEQQGTQPGDIL 100 110 120 130 140 150 260 270 280 290 300 310 pF1KE1 PNADETWYLRATLDVVAGEAAGLSCRVKHSSLEGQDIVLYWGGSYTSMGLIALAVLACLL :::::::::::::::::::::::::::::::::::::::::::::::::::::::::::: XP_011 PNADETWYLRATLDVVAGEAAGLSCRVKHSSLEGQDIVLYWGGSYTSMGLIALAVLACLL 160 170 180 190 200 210 320 330 pF1KE1 FLLIVGFTSRFKRQTSYQGVL ::::::::::::::::::::: XP_011 FLLIVGFTSRFKRQTSYQGVL 220 230 >>XP_006711684 (OMIM: 188410) PREDICTED: antigen-present (231 aa) initn: 1592 init1: 1592 opt: 1592 Z-score: 1892.7 bits: 358.0 E(85289): 1.1e-98 Smith-Waterman score: 1592; 100.0% identity (100.0% similar) in 231 aa overlap (105-335:1-231) 80 90 100 110 120 130 pF1KE1 TFSDQQWETLQHIFRVYRSSFTRDVKEFAKMLRLSYPLELQVSAGCEVHPGNASNNFFHV :::::::::::::::::::::::::::::: XP_006 MLRLSYPLELQVSAGCEVHPGNASNNFFHV 10 20 30 140 150 160 170 180 190 pF1KE1 AFQGKDILSFQGTSWEPTQEAPLWVNLAIQVLNQDKWTRETVQWLLNGTCPQFVSGLLES :::::::::::::::::::::::::::::::::::::::::::::::::::::::::::: XP_006 AFQGKDILSFQGTSWEPTQEAPLWVNLAIQVLNQDKWTRETVQWLLNGTCPQFVSGLLES 40 50 60 70 80 90 200 210 220 230 240 250 pF1KE1 GKSELKKQVKPKAWLSRGPSPGPGRLLLVCHVSGFYPKPVWVKWMRGEQEQQGTQPGDIL :::::::::::::::::::::::::::::::::::::::::::::::::::::::::::: XP_006 GKSELKKQVKPKAWLSRGPSPGPGRLLLVCHVSGFYPKPVWVKWMRGEQEQQGTQPGDIL 100 110 120 130 140 150 260 270 280 290 300 310 pF1KE1 PNADETWYLRATLDVVAGEAAGLSCRVKHSSLEGQDIVLYWGGSYTSMGLIALAVLACLL :::::::::::::::::::::::::::::::::::::::::::::::::::::::::::: XP_006 PNADETWYLRATLDVVAGEAAGLSCRVKHSSLEGQDIVLYWGGSYTSMGLIALAVLACLL 160 170 180 190 200 210 320 330 pF1KE1 FLLIVGFTSRFKRQTSYQGVL ::::::::::::::::::::: XP_006 FLLIVGFTSRFKRQTSYQGVL 220 230 >>NP_001306074 (OMIM: 188410) antigen-presenting glycopr (242 aa) initn: 1637 init1: 1402 opt: 1402 Z-score: 1667.2 bits: 316.4 E(85289): 4e-86 Smith-Waterman score: 1455; 72.2% identity (72.2% similar) in 335 aa overlap (1-335:1-242) 10 20 30 40 50 60 pF1KE1 MGCLLFLLLWALLQAWGSAEVPQRLFPLRCLQISSFANSSWTRTDGLAWLGELQTHSWSN :::::::::::::::::::::::::::::::::::::::::::::::::::::::::::: NP_001 MGCLLFLLLWALLQAWGSAEVPQRLFPLRCLQISSFANSSWTRTDGLAWLGELQTHSWSN 10 20 30 40 50 60 70 80 90 100 110 120 pF1KE1 DSDTVRSLKPWSQGTFSDQQWETLQHIFRVYRSSFTRDVKEFAKMLRLSYPLELQVSAGC :::::::::::::::::::::::::::::::::::::::::::::::::::::::::::: NP_001 DSDTVRSLKPWSQGTFSDQQWETLQHIFRVYRSSFTRDVKEFAKMLRLSYPLELQVSAGC 70 80 90 100 110 120 130 140 150 160 170 180 pF1KE1 EVHPGNASNNFFHVAFQGKDILSFQGTSWEPTQEAPLWVNLAIQVLNQDKWTRETVQWLL :::::::::::::::::::::::::::::::::::::::::::::::::::::::::::: NP_001 EVHPGNASNNFFHVAFQGKDILSFQGTSWEPTQEAPLWVNLAIQVLNQDKWTRETVQWLL 130 140 150 160 170 180 190 200 210 220 230 240 pF1KE1 NGTCPQFVSGLLESGKSELKKQVKPKAWLSRGPSPGPGRLLLVCHVSGFYPKPVWVKWMR :::::::::::::::::::::: NP_001 NGTCPQFVSGLLESGKSELKKQ-------------------------------------- 190 200 250 260 270 280 290 300 pF1KE1 GEQEQQGTQPGDILPNADETWYLRATLDVVAGEAAGLSCRVKHSSLEGQDIVLYWGGSYT ::::: NP_001 -------------------------------------------------------GGSYT 310 320 330 pF1KE1 SMGLIALAVLACLLFLLIVGFTSRFKRQTSYQGVL ::::::::::::::::::::::::::::::::::: NP_001 SMGLIALAVLACLLFLLIVGFTSRFKRQTSYQGVL 210 220 230 240 >>NP_112155 (OMIM: 188411) T-cell surface glycoprotein C (388 aa) initn: 1241 init1: 871 opt: 1226 Z-score: 1455.8 bits: 277.9 E(85289): 2.4e-74 Smith-Waterman score: 1226; 54.1% identity (78.1% similar) in 342 aa overlap (4-335:3-339) 10 20 30 40 50 pF1KE1 MGCLLFLLLWALLQAWGSAEVPQRL----------FPLRCLQISSFANSSWTRTDGLAWL :::::. .: .. .:: : . .: :: ::::: ::....: .:: NP_112 MLLLFLLFEGLCCPGENTAAPQALQSYHLAAEEQLSFRMLQTSSFANHSWAHSEGSGWL 10 20 30 40 50 60 70 80 90 100 110 pF1KE1 GELQTHSWSNDSDTVRSLKPWSQGTFSDQQWETLQHIFRVYRSSFTRDVKEFAKMLRLSY :.::::.:.. :.: :::::.:.:: :. ..:: .:..: :: . :. : ...: : NP_112 GDLQTHGWDTVLGTIRFLKPWSHGNFSKQELKNLQSLFQLYFHSFIQIVQASAGQFQLEY 60 70 80 90 100 110 120 130 140 150 160 170 pF1KE1 PLELQVSAGCEVHPGNASNNFFHVAFQGKDILSFQGTSWEPTQEAPLWVNLAIQVLNQDK :.:.:. :::.. :: . :...:.::.:.::::: ::::. : . .. .:::. NP_112 PFEIQILAGCRM---NAPQIFLNMAYQGSDFLSFQGISWEPSPGAGIRAQNICKVLNRYL 120 130 140 150 160 170 180 190 200 210 220 230 pF1KE1 WTRETVQWLLNGTCPQFVSGLLESGKSELKKQVKPKAWLSRGPSPGPGRLLLVCHVSGFY .: .: ::. :::.:..::.:.:.::::..:::.:::: ::::::::: ::::::::: NP_112 DIKEILQSLLGHTCPRFLAGLMEAGESELKRKVKPEAWLSCGPSPGPGRLQLVCHVSGFY 180 190 200 210 220 230 240 250 260 270 280 290 pF1KE1 PKPVWVKWMRGEQEQQGTQPGDILPNADETWYLRATLDVVAGEAAGLSCRVKHSSLEGQD :::::: ::::::::.::: ::.::::::::::::::::.:::::::::::::::: :.: NP_112 PKPVWVMWMRGEQEQRGTQRGDVLPNADETWYLRATLDVAAGEAAGLSCRVKHSSLGGHD 240 250 260 270 280 290 300 310 320 330 pF1KE1 IVLYWGGSYTSMGLIALAVLACLLFLLIVGFTSRFKRQTSYQGVL ....::: . :: :.:.. :..:..: ::.:.:.: ...: NP_112 LIIHWGGYSIFLILICLTVIVTLVILVVV--DSRLKKQSSNKNILSPHTPSPVFLMGANT 300 310 320 330 340 350 NP_112 QDTKNSRHQFCLAQVSWIKNRVLKKWKTRLNQLW 360 370 380 >>NP_001036048 (OMIM: 188411) T-cell surface glycoprotei (376 aa) initn: 1241 init1: 871 opt: 1212 Z-score: 1439.3 bits: 274.8 E(85289): 2e-73 Smith-Waterman score: 1212; 54.5% identity (78.0% similar) in 336 aa overlap (4-329:3-333) 10 20 30 40 50 pF1KE1 MGCLLFLLLWALLQAWGSAEVPQRL----------FPLRCLQISSFANSSWTRTDGLAWL :::::. .: .. .:: : . .: :: ::::: ::....: .:: NP_001 MLLLFLLFEGLCCPGENTAAPQALQSYHLAAEEQLSFRMLQTSSFANHSWAHSEGSGWL 10 20 30 40 50 60 70 80 90 100 110 pF1KE1 GELQTHSWSNDSDTVRSLKPWSQGTFSDQQWETLQHIFRVYRSSFTRDVKEFAKMLRLSY :.::::.:.. :.: :::::.:.:: :. ..:: .:..: :: . :. : ...: : NP_001 GDLQTHGWDTVLGTIRFLKPWSHGNFSKQELKNLQSLFQLYFHSFIQIVQASAGQFQLEY 60 70 80 90 100 110 120 130 140 150 160 170 pF1KE1 PLELQVSAGCEVHPGNASNNFFHVAFQGKDILSFQGTSWEPTQEAPLWVNLAIQVLNQDK :.:.:. :::.. :: . :...:.::.:.::::: ::::. : . .. .:::. NP_001 PFEIQILAGCRM---NAPQIFLNMAYQGSDFLSFQGISWEPSPGAGIRAQNICKVLNRYL 120 130 140 150 160 170 180 190 200 210 220 230 pF1KE1 WTRETVQWLLNGTCPQFVSGLLESGKSELKKQVKPKAWLSRGPSPGPGRLLLVCHVSGFY .: .: ::. :::.:..::.:.:.::::..:::.:::: ::::::::: ::::::::: NP_001 DIKEILQSLLGHTCPRFLAGLMEAGESELKRKVKPEAWLSCGPSPGPGRLQLVCHVSGFY 180 190 200 210 220 230 240 250 260 270 280 290 pF1KE1 PKPVWVKWMRGEQEQQGTQPGDILPNADETWYLRATLDVVAGEAAGLSCRVKHSSLEGQD :::::: ::::::::.::: ::.::::::::::::::::.:::::::::::::::: :.: NP_001 PKPVWVMWMRGEQEQRGTQRGDVLPNADETWYLRATLDVAAGEAAGLSCRVKHSSLGGHD 240 250 260 270 280 290 300 310 320 330 pF1KE1 IVLYWGGSYTSMGLIALAVLACLLFLLIVGFTSRFKRQTSYQGVL ....::: . :: :.:.. :..:..: ::.:.:. NP_001 LIIHWGGYSIFLILICLTVIVTLVILVVVD--SRLKKQSPVFLMGANTQDTKNSRHQFCL 300 310 320 330 340 350 NP_001 AQVSWIKNRVLKKWKTRLNQLW 360 370 >>NP_001754 (OMIM: 188370) T-cell surface glycoprotein C (327 aa) initn: 1096 init1: 1096 opt: 1165 Z-score: 1384.4 bits: 264.5 E(85289): 2.3e-70 Smith-Waterman score: 1165; 52.0% identity (80.4% similar) in 327 aa overlap (4-328:1-324) 10 20 30 40 50 pF1KE1 MGCLLFLLL--WALLQAWGSAEVPQRLFPLRCLQISSFANSSWTRTDGLAWLGELQTHSW .::::: :.: . :.:. .. . .. :.:: : :: .. .::..::::.: NP_001 MLFLLLPLLAVLPGDGNADGLKEPLSFHVTWIASFYNHSWKQNLVSGWLSDLQTHTW 10 20 30 40 50 60 70 80 90 100 110 pF1KE1 SNDSDTVRSLKPWSQGTFSDQQWETLQHIFRVYRSSFTRDVKEFAKMLRLSYPLELQVSA ...:.:. : :::.:.::...:. :. .::. . ....:. :.. ::.:.::.. NP_001 DSNSSTIVFLCPWSRGNFSNEEWKELETLFRIRTIRSFEGIRRYAHELQFEYPFEIQVTG 60 70 80 90 100 110 120 130 140 150 160 170 pF1KE1 GCEVHPGNASNNFFHVAFQGKDILSFQGTSWEPTQEAPLWVNLAIQVLNQDKWTRETVQW :::.: :..:..:...:.::.:..:::..:: : : .. .::::.. . .. NP_001 GCELHSGKVSGSFLQLAYQGSDFVSFQNNSWLPYPVAGNMAKHFCKVLNQNQHENDITHN 120 130 140 150 160 170 180 190 200 210 220 230 pF1KE1 LLNGTCPQFVSGLLESGKSELKKQVKPKAWLSRGPSPGPGRLLLVCHVSGFYPKPVWVKW ::. :::.:. :::..::..:..::::.::::.:::::::.: ::::::::::::::: : NP_001 LLSDTCPRFILGLLDAGKAHLQRQVKPEAWLSHGPSPGPGHLQLVCHVSGFYPKPVWVMW 180 190 200 210 220 230 240 250 260 270 280 290 pF1KE1 MRGEQEQQGTQPGDILPNADETWYLRATLDVVAGEAAGLSCRVKHSSLEGQDIVLYWGGS ::::::::::: :::::.:: ::::::::.:.::::: ::::::::::::::::::: NP_001 MRGEQEQQGTQRGDILPSADGTWYLRATLEVAAGEAADLSCRVKHSSLEGQDIVLYWE-H 240 250 260 270 280 290 300 310 320 330 pF1KE1 YTSMGLIALAVLACLLFLLIVGFTSRFKRQTSYQGVL ..:.:.: :::.. :: :..:.. :... NP_001 HSSVGFIILAVIVPLL--LLIGLALWFRKRCFC 300 310 320 >>NP_001307581 (OMIM: 188370) T-cell surface glycoprotei (316 aa) initn: 1096 init1: 1096 opt: 1147 Z-score: 1363.2 bits: 260.5 E(85289): 3.4e-69 Smith-Waterman score: 1147; 52.2% identity (80.9% similar) in 314 aa overlap (15-328:3-313) 10 20 30 40 50 60 pF1KE1 MGCLLFLLLWALLQAWGSAEVPQRLFPLRCLQISSFANSSWTRTDGLAWLGELQTHSWSN :.:.: .. . .. :.:: : :: .. .::..::::.:.. NP_001 MFAFGGATGLKEPLSFHVTWIASFYNHSWKQNLVSGWLSDLQTHTWDS 10 20 30 40 70 80 90 100 110 120 pF1KE1 DSDTVRSLKPWSQGTFSDQQWETLQHIFRVYRSSFTRDVKEFAKMLRLSYPLELQVSAGC .:.:. : :::.:.::...:. :. .::. . ....:. :.. ::.:.::..:: NP_001 NSSTIVFLCPWSRGNFSNEEWKELETLFRIRTIRSFEGIRRYAHELQFEYPFEIQVTGGC 50 60 70 80 90 100 130 140 150 160 170 180 pF1KE1 EVHPGNASNNFFHVAFQGKDILSFQGTSWEPTQEAPLWVNLAIQVLNQDKWTRETVQWLL :.: :..:..:...:.::.:..:::..:: : : .. .::::.. . .. :: NP_001 ELHSGKVSGSFLQLAYQGSDFVSFQNNSWLPYPVAGNMAKHFCKVLNQNQHENDITHNLL 110 120 130 140 150 160 190 200 210 220 230 240 pF1KE1 NGTCPQFVSGLLESGKSELKKQVKPKAWLSRGPSPGPGRLLLVCHVSGFYPKPVWVKWMR . :::.:. :::..::..:..::::.::::.:::::::.: ::::::::::::::: ::: NP_001 SDTCPRFILGLLDAGKAHLQRQVKPEAWLSHGPSPGPGHLQLVCHVSGFYPKPVWVMWMR 170 180 190 200 210 220 250 260 270 280 290 300 pF1KE1 GEQEQQGTQPGDILPNADETWYLRATLDVVAGEAAGLSCRVKHSSLEGQDIVLYWGGSYT ::::::::: :::::.:: ::::::::.:.::::: ::::::::::::::::::: .. NP_001 GEQEQQGTQRGDILPSADGTWYLRATLEVAAGEAADLSCRVKHSSLEGQDIVLYWE-HHS 230 240 250 260 270 280 310 320 330 pF1KE1 SMGLIALAVLACLLFLLIVGFTSRFKRQTSYQGVL :.:.: :::.. : ::..:.. :... NP_001 SVGFIILAVIVPL--LLLIGLALWFRKRCFC 290 300 310 335 residues in 1 query sequences 60827320 residues in 85289 library sequences Tcomplib [36.3.4 Apr, 2011] (8 proc) start: Sun Nov 6 18:52:56 2016 done: Sun Nov 6 18:52:58 2016 Total Scan time: 8.200 Total Display time: 0.040 Function used was FASTA [36.3.4 Apr, 2011]