FASTA searches a protein or DNA sequence data bank 36.3.4 Apr, 2011 Please cite: W.R. Pearson & D.J. Lipman PNAS (1988) 85:2444-2448 Query: pF1KE5328, 272 aa 1>>>pF1KE5328 272 - 272 aa - 272 aa Library: /omim/omim.rfq.tfa 60827320 residues in 85289 sequences Statistics: Expectation_n fit: rho(ln(x))= 5.3773+/-0.000276; mu= 15.8584+/- 0.017 mean_var=77.0842+/-14.898, 0's: 0 Z-trim(119.4): 22 B-trim: 0 in 0/54 Lambda= 0.146080 statistics sampled from 33296 (33319) to 33296 sequences Algorithm: FASTA (3.7 Nov 2010) [optimized] Parameters: BL50 matrix (15:-5), open/ext: -10/-2 ktup: 2, E-join: 1 (0.759), E-opt: 0.2 (0.391), width: 16 Scan time: 7.130 The best scores are: opt bits E(85289) NP_005390 (OMIM: 602741) 5'-AMP-activated protein ( 272) 1840 396.4 2.9e-110 XP_011508031 (OMIM: 602741) PREDICTED: 5'-AMP-acti ( 265) 1685 363.8 1.9e-100 XP_005253966 (OMIM: 602740) PREDICTED: 5'-AMP-acti ( 270) 1298 282.2 6.9e-76 NP_006244 (OMIM: 602740) 5'-AMP-activated protein ( 270) 1298 282.2 6.9e-76 XP_016857186 (OMIM: 602741) PREDICTED: 5'-AMP-acti ( 197) 963 211.5 9.7e-55 >>NP_005390 (OMIM: 602741) 5'-AMP-activated protein kina (272 aa) initn: 1840 init1: 1840 opt: 1840 Z-score: 2100.7 bits: 396.4 E(85289): 2.9e-110 Smith-Waterman score: 1840; 100.0% identity (100.0% similar) in 272 aa overlap (1-272:1-272) 10 20 30 40 50 60 pF1KE5 MGNTTSDRVSGERHGAKAARSEGAGGHAPGKEHKIMVGSTDDPSVFSLPDSKLPGDKEFV :::::::::::::::::::::::::::::::::::::::::::::::::::::::::::: NP_005 MGNTTSDRVSGERHGAKAARSEGAGGHAPGKEHKIMVGSTDDPSVFSLPDSKLPGDKEFV 10 20 30 40 50 60 70 80 90 100 110 120 pF1KE5 SWQQDLEDSVKPTQQARPTVIRWSEGGKEVFISGSFNNWSTKIPLIKSHNDFVAILDLPE :::::::::::::::::::::::::::::::::::::::::::::::::::::::::::: NP_005 SWQQDLEDSVKPTQQARPTVIRWSEGGKEVFISGSFNNWSTKIPLIKSHNDFVAILDLPE 70 80 90 100 110 120 130 140 150 160 170 180 pF1KE5 GEHQYKFFVDGQWVHDPSEPVVTSQLGTINNLIHVKKSDFEVFDALKLDSMESSETSCRD :::::::::::::::::::::::::::::::::::::::::::::::::::::::::::: NP_005 GEHQYKFFVDGQWVHDPSEPVVTSQLGTINNLIHVKKSDFEVFDALKLDSMESSETSCRD 130 140 150 160 170 180 190 200 210 220 230 240 pF1KE5 LSSSPPGPYGQEMYAFRSEERFKSPPILPPHLLQVILNKDTNISCDPALLPEPNHVMLNH :::::::::::::::::::::::::::::::::::::::::::::::::::::::::::: NP_005 LSSSPPGPYGQEMYAFRSEERFKSPPILPPHLLQVILNKDTNISCDPALLPEPNHVMLNH 190 200 210 220 230 240 250 260 270 pF1KE5 LYALSIKDSVMVLSATHRYKKKYVTTLLYKPI :::::::::::::::::::::::::::::::: NP_005 LYALSIKDSVMVLSATHRYKKKYVTTLLYKPI 250 260 270 >>XP_011508031 (OMIM: 602741) PREDICTED: 5'-AMP-activate (265 aa) initn: 1685 init1: 1685 opt: 1685 Z-score: 1924.3 bits: 363.8 E(85289): 1.9e-100 Smith-Waterman score: 1685; 100.0% identity (100.0% similar) in 247 aa overlap (1-247:1-247) 10 20 30 40 50 60 pF1KE5 MGNTTSDRVSGERHGAKAARSEGAGGHAPGKEHKIMVGSTDDPSVFSLPDSKLPGDKEFV :::::::::::::::::::::::::::::::::::::::::::::::::::::::::::: XP_011 MGNTTSDRVSGERHGAKAARSEGAGGHAPGKEHKIMVGSTDDPSVFSLPDSKLPGDKEFV 10 20 30 40 50 60 70 80 90 100 110 120 pF1KE5 SWQQDLEDSVKPTQQARPTVIRWSEGGKEVFISGSFNNWSTKIPLIKSHNDFVAILDLPE :::::::::::::::::::::::::::::::::::::::::::::::::::::::::::: XP_011 SWQQDLEDSVKPTQQARPTVIRWSEGGKEVFISGSFNNWSTKIPLIKSHNDFVAILDLPE 70 80 90 100 110 120 130 140 150 160 170 180 pF1KE5 GEHQYKFFVDGQWVHDPSEPVVTSQLGTINNLIHVKKSDFEVFDALKLDSMESSETSCRD :::::::::::::::::::::::::::::::::::::::::::::::::::::::::::: XP_011 GEHQYKFFVDGQWVHDPSEPVVTSQLGTINNLIHVKKSDFEVFDALKLDSMESSETSCRD 130 140 150 160 170 180 190 200 210 220 230 240 pF1KE5 LSSSPPGPYGQEMYAFRSEERFKSPPILPPHLLQVILNKDTNISCDPALLPEPNHVMLNH :::::::::::::::::::::::::::::::::::::::::::::::::::::::::::: XP_011 LSSSPPGPYGQEMYAFRSEERFKSPPILPPHLLQVILNKDTNISCDPALLPEPNHVMLNH 190 200 210 220 230 240 250 260 270 pF1KE5 LYALSIKDSVMVLSATHRYKKKYVTTLLYKPI ::::::: XP_011 LYALSIKIKKLRLREGQIARQCDGP 250 260 >>XP_005253966 (OMIM: 602740) PREDICTED: 5'-AMP-activate (270 aa) initn: 1276 init1: 555 opt: 1298 Z-score: 1483.4 bits: 282.2 E(85289): 6.9e-76 Smith-Waterman score: 1298; 70.3% identity (87.2% similar) in 273 aa overlap (1-272:1-270) 10 20 30 40 50 pF1KE5 MGNTTSDRVSGERHGA-KAARSEGAGGHAPGKEHKIMVGSTDDPSVFSLPDSKLPGDKEF ::::.:.:.. ::::. :. : ...:: : . ::.. : .: ..: . : : .:: XP_005 MGNTSSERAALERHGGHKTPRRDSSGGTKDGDRPKILMDSPEDADLFHSEEIKAPEKEEF 10 20 30 40 50 60 60 70 80 90 100 110 pF1KE5 VSWQQDLEDSVKPTQQARPTVIRWSEGGKEVFISGSFNNWSTKIPLIKSHNDFVAILDLP ..::.::: . : ::::::.::. :::::..:::::::: :.:: .:::.:::::::: XP_005 LAWQHDLEVNDKAPAQARPTVFRWTGGGKEVYLSGSFNNWS-KLPLTRSHNNFVAILDLP 70 80 90 100 110 120 130 140 150 160 170 pF1KE5 EGEHQYKFFVDGQWVHDPSEPVVTSQLGTINNLIHVKKSDFEVFDALKLDSMESSETSCR ::::::::::::::.::::::.:::::::.::.:.:::.:::::::: .::.. :..: XP_005 EGEHQYKFFVDGQWTHDPSEPIVTSQLGTVNNIIQVKKTDFEVFDALMVDSQKCSDVS-- 120 130 140 150 160 170 180 190 200 210 220 230 pF1KE5 DLSSSPPGPYGQEMYAFRSEERFKSPPILPPHLLQVILNKDTNISCDPALLPEPNHVMLN .::::::::: :: :. . ::::..:::::::::::::::::.::::::::::::::::: XP_005 ELSSSPPGPYHQEPYVCKPEERFRAPPILPPHLLQVILNKDTGISCDPALLPEPNHVMLN 180 190 200 210 220 230 240 250 260 270 pF1KE5 HLYALSIKDSVMVLSATHRYKKKYVTTLLYKPI :::::::::.::::::::::::::::::::::: XP_005 HLYALSIKDGVMVLSATHRYKKKYVTTLLYKPI 240 250 260 270 >>NP_006244 (OMIM: 602740) 5'-AMP-activated protein kina (270 aa) initn: 1276 init1: 555 opt: 1298 Z-score: 1483.4 bits: 282.2 E(85289): 6.9e-76 Smith-Waterman score: 1298; 70.3% identity (87.2% similar) in 273 aa overlap (1-272:1-270) 10 20 30 40 50 pF1KE5 MGNTTSDRVSGERHGA-KAARSEGAGGHAPGKEHKIMVGSTDDPSVFSLPDSKLPGDKEF ::::.:.:.. ::::. :. : ...:: : . ::.. : .: ..: . : : .:: NP_006 MGNTSSERAALERHGGHKTPRRDSSGGTKDGDRPKILMDSPEDADLFHSEEIKAPEKEEF 10 20 30 40 50 60 60 70 80 90 100 110 pF1KE5 VSWQQDLEDSVKPTQQARPTVIRWSEGGKEVFISGSFNNWSTKIPLIKSHNDFVAILDLP ..::.::: . : ::::::.::. :::::..:::::::: :.:: .:::.:::::::: NP_006 LAWQHDLEVNDKAPAQARPTVFRWTGGGKEVYLSGSFNNWS-KLPLTRSHNNFVAILDLP 70 80 90 100 110 120 130 140 150 160 170 pF1KE5 EGEHQYKFFVDGQWVHDPSEPVVTSQLGTINNLIHVKKSDFEVFDALKLDSMESSETSCR ::::::::::::::.::::::.:::::::.::.:.:::.:::::::: .::.. :..: NP_006 EGEHQYKFFVDGQWTHDPSEPIVTSQLGTVNNIIQVKKTDFEVFDALMVDSQKCSDVS-- 120 130 140 150 160 170 180 190 200 210 220 230 pF1KE5 DLSSSPPGPYGQEMYAFRSEERFKSPPILPPHLLQVILNKDTNISCDPALLPEPNHVMLN .::::::::: :: :. . ::::..:::::::::::::::::.::::::::::::::::: NP_006 ELSSSPPGPYHQEPYVCKPEERFRAPPILPPHLLQVILNKDTGISCDPALLPEPNHVMLN 180 190 200 210 220 230 240 250 260 270 pF1KE5 HLYALSIKDSVMVLSATHRYKKKYVTTLLYKPI :::::::::.::::::::::::::::::::::: NP_006 HLYALSIKDGVMVLSATHRYKKKYVTTLLYKPI 240 250 260 270 >>XP_016857186 (OMIM: 602741) PREDICTED: 5'-AMP-activate (197 aa) initn: 963 init1: 963 opt: 963 Z-score: 1103.7 bits: 211.5 E(85289): 9.7e-55 Smith-Waterman score: 963; 100.0% identity (100.0% similar) in 139 aa overlap (1-139:1-139) 10 20 30 40 50 60 pF1KE5 MGNTTSDRVSGERHGAKAARSEGAGGHAPGKEHKIMVGSTDDPSVFSLPDSKLPGDKEFV :::::::::::::::::::::::::::::::::::::::::::::::::::::::::::: XP_016 MGNTTSDRVSGERHGAKAARSEGAGGHAPGKEHKIMVGSTDDPSVFSLPDSKLPGDKEFV 10 20 30 40 50 60 70 80 90 100 110 120 pF1KE5 SWQQDLEDSVKPTQQARPTVIRWSEGGKEVFISGSFNNWSTKIPLIKSHNDFVAILDLPE :::::::::::::::::::::::::::::::::::::::::::::::::::::::::::: XP_016 SWQQDLEDSVKPTQQARPTVIRWSEGGKEVFISGSFNNWSTKIPLIKSHNDFVAILDLPE 70 80 90 100 110 120 130 140 150 160 170 180 pF1KE5 GEHQYKFFVDGQWVHDPSEPVVTSQLGTINNLIHVKKSDFEVFDALKLDSMESSETSCRD ::::::::::::::::::: XP_016 GEHQYKFFVDGQWVHDPSETFPAHPQGLMVKKCMRFDLRKDSNPHPSFLLIYFKLFLTKT 130 140 150 160 170 180 272 residues in 1 query sequences 60827320 residues in 85289 library sequences Tcomplib [36.3.4 Apr, 2011] (8 proc) start: Mon Nov 7 23:49:03 2016 done: Mon Nov 7 23:49:04 2016 Total Scan time: 7.130 Total Display time: -0.010 Function used was FASTA [36.3.4 Apr, 2011]