Result of FASTA (omim) for pFN21AE5328
FASTA searches a protein or DNA sequence data bank 36.3.4 Apr, 2011
Please cite:
W.R. Pearson & D.J. Lipman PNAS (1988) 85:2444-2448

Query: pF1KE5328, 272 aa
  1>>>pF1KE5328 272 - 272 aa - 272 aa
Library: /omim/omim.rfq.tfa
  60827320 residues in 85289 sequences

Statistics:  Expectation_n fit: rho(ln(x))= 5.3773+/-0.000276; mu= 15.8584+/- 0.017
 mean_var=77.0842+/-14.898, 0's: 0 Z-trim(119.4): 22  B-trim: 0 in 0/54
 Lambda= 0.146080
 statistics sampled from 33296 (33319) to 33296 sequences
Algorithm: FASTA (3.7 Nov 2010) [optimized]
Parameters: BL50 matrix (15:-5), open/ext: -10/-2
 ktup: 2, E-join: 1 (0.759), E-opt: 0.2 (0.391), width:  16
 Scan time:  7.130

The best scores are:                                      opt bits E(85289)
NP_005390 (OMIM: 602741) 5'-AMP-activated protein  ( 272) 1840 396.4 2.9e-110
XP_011508031 (OMIM: 602741) PREDICTED: 5'-AMP-acti ( 265) 1685 363.8 1.9e-100
XP_005253966 (OMIM: 602740) PREDICTED: 5'-AMP-acti ( 270) 1298 282.2 6.9e-76
NP_006244 (OMIM: 602740) 5'-AMP-activated protein  ( 270) 1298 282.2 6.9e-76
XP_016857186 (OMIM: 602741) PREDICTED: 5'-AMP-acti ( 197)  963 211.5 9.7e-55


>>NP_005390 (OMIM: 602741) 5'-AMP-activated protein kina  (272 aa)
 initn: 1840 init1: 1840 opt: 1840  Z-score: 2100.7  bits: 396.4 E(85289): 2.9e-110
Smith-Waterman score: 1840; 100.0% identity (100.0% similar) in 272 aa overlap (1-272:1-272)

               10        20        30        40        50        60
pF1KE5 MGNTTSDRVSGERHGAKAARSEGAGGHAPGKEHKIMVGSTDDPSVFSLPDSKLPGDKEFV
       ::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
NP_005 MGNTTSDRVSGERHGAKAARSEGAGGHAPGKEHKIMVGSTDDPSVFSLPDSKLPGDKEFV
               10        20        30        40        50        60

               70        80        90       100       110       120
pF1KE5 SWQQDLEDSVKPTQQARPTVIRWSEGGKEVFISGSFNNWSTKIPLIKSHNDFVAILDLPE
       ::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
NP_005 SWQQDLEDSVKPTQQARPTVIRWSEGGKEVFISGSFNNWSTKIPLIKSHNDFVAILDLPE
               70        80        90       100       110       120

              130       140       150       160       170       180
pF1KE5 GEHQYKFFVDGQWVHDPSEPVVTSQLGTINNLIHVKKSDFEVFDALKLDSMESSETSCRD
       ::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
NP_005 GEHQYKFFVDGQWVHDPSEPVVTSQLGTINNLIHVKKSDFEVFDALKLDSMESSETSCRD
              130       140       150       160       170       180

              190       200       210       220       230       240
pF1KE5 LSSSPPGPYGQEMYAFRSEERFKSPPILPPHLLQVILNKDTNISCDPALLPEPNHVMLNH
       ::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
NP_005 LSSSPPGPYGQEMYAFRSEERFKSPPILPPHLLQVILNKDTNISCDPALLPEPNHVMLNH
              190       200       210       220       230       240

              250       260       270  
pF1KE5 LYALSIKDSVMVLSATHRYKKKYVTTLLYKPI
       ::::::::::::::::::::::::::::::::
NP_005 LYALSIKDSVMVLSATHRYKKKYVTTLLYKPI
              250       260       270  

>>XP_011508031 (OMIM: 602741) PREDICTED: 5'-AMP-activate  (265 aa)
 initn: 1685 init1: 1685 opt: 1685  Z-score: 1924.3  bits: 363.8 E(85289): 1.9e-100
Smith-Waterman score: 1685; 100.0% identity (100.0% similar) in 247 aa overlap (1-247:1-247)

               10        20        30        40        50        60
pF1KE5 MGNTTSDRVSGERHGAKAARSEGAGGHAPGKEHKIMVGSTDDPSVFSLPDSKLPGDKEFV
       ::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
XP_011 MGNTTSDRVSGERHGAKAARSEGAGGHAPGKEHKIMVGSTDDPSVFSLPDSKLPGDKEFV
               10        20        30        40        50        60

               70        80        90       100       110       120
pF1KE5 SWQQDLEDSVKPTQQARPTVIRWSEGGKEVFISGSFNNWSTKIPLIKSHNDFVAILDLPE
       ::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
XP_011 SWQQDLEDSVKPTQQARPTVIRWSEGGKEVFISGSFNNWSTKIPLIKSHNDFVAILDLPE
               70        80        90       100       110       120

              130       140       150       160       170       180
pF1KE5 GEHQYKFFVDGQWVHDPSEPVVTSQLGTINNLIHVKKSDFEVFDALKLDSMESSETSCRD
       ::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
XP_011 GEHQYKFFVDGQWVHDPSEPVVTSQLGTINNLIHVKKSDFEVFDALKLDSMESSETSCRD
              130       140       150       160       170       180

              190       200       210       220       230       240
pF1KE5 LSSSPPGPYGQEMYAFRSEERFKSPPILPPHLLQVILNKDTNISCDPALLPEPNHVMLNH
       ::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
XP_011 LSSSPPGPYGQEMYAFRSEERFKSPPILPPHLLQVILNKDTNISCDPALLPEPNHVMLNH
              190       200       210       220       230       240

              250       260       270  
pF1KE5 LYALSIKDSVMVLSATHRYKKKYVTTLLYKPI
       :::::::                         
XP_011 LYALSIKIKKLRLREGQIARQCDGP       
              250       260            

>>XP_005253966 (OMIM: 602740) PREDICTED: 5'-AMP-activate  (270 aa)
 initn: 1276 init1: 555 opt: 1298  Z-score: 1483.4  bits: 282.2 E(85289): 6.9e-76
Smith-Waterman score: 1298; 70.3% identity (87.2% similar) in 273 aa overlap (1-272:1-270)

               10         20        30        40        50         
pF1KE5 MGNTTSDRVSGERHGA-KAARSEGAGGHAPGKEHKIMVGSTDDPSVFSLPDSKLPGDKEF
       ::::.:.:.. ::::. :. : ...::   : . ::.. : .: ..:   . : :  .::
XP_005 MGNTSSERAALERHGGHKTPRRDSSGGTKDGDRPKILMDSPEDADLFHSEEIKAPEKEEF
               10        20        30        40        50        60

      60        70        80        90       100       110         
pF1KE5 VSWQQDLEDSVKPTQQARPTVIRWSEGGKEVFISGSFNNWSTKIPLIKSHNDFVAILDLP
       ..::.::: . :   ::::::.::. :::::..:::::::: :.:: .:::.::::::::
XP_005 LAWQHDLEVNDKAPAQARPTVFRWTGGGKEVYLSGSFNNWS-KLPLTRSHNNFVAILDLP
               70        80        90       100        110         

     120       130       140       150       160       170         
pF1KE5 EGEHQYKFFVDGQWVHDPSEPVVTSQLGTINNLIHVKKSDFEVFDALKLDSMESSETSCR
       ::::::::::::::.::::::.:::::::.::.:.:::.:::::::: .::.. :..:  
XP_005 EGEHQYKFFVDGQWTHDPSEPIVTSQLGTVNNIIQVKKTDFEVFDALMVDSQKCSDVS--
     120       130       140       150       160       170         

     180       190       200       210       220       230         
pF1KE5 DLSSSPPGPYGQEMYAFRSEERFKSPPILPPHLLQVILNKDTNISCDPALLPEPNHVMLN
       .::::::::: :: :. . ::::..:::::::::::::::::.:::::::::::::::::
XP_005 ELSSSPPGPYHQEPYVCKPEERFRAPPILPPHLLQVILNKDTGISCDPALLPEPNHVMLN
       180       190       200       210       220       230       

     240       250       260       270  
pF1KE5 HLYALSIKDSVMVLSATHRYKKKYVTTLLYKPI
       :::::::::.:::::::::::::::::::::::
XP_005 HLYALSIKDGVMVLSATHRYKKKYVTTLLYKPI
       240       250       260       270

>>NP_006244 (OMIM: 602740) 5'-AMP-activated protein kina  (270 aa)
 initn: 1276 init1: 555 opt: 1298  Z-score: 1483.4  bits: 282.2 E(85289): 6.9e-76
Smith-Waterman score: 1298; 70.3% identity (87.2% similar) in 273 aa overlap (1-272:1-270)

               10         20        30        40        50         
pF1KE5 MGNTTSDRVSGERHGA-KAARSEGAGGHAPGKEHKIMVGSTDDPSVFSLPDSKLPGDKEF
       ::::.:.:.. ::::. :. : ...::   : . ::.. : .: ..:   . : :  .::
NP_006 MGNTSSERAALERHGGHKTPRRDSSGGTKDGDRPKILMDSPEDADLFHSEEIKAPEKEEF
               10        20        30        40        50        60

      60        70        80        90       100       110         
pF1KE5 VSWQQDLEDSVKPTQQARPTVIRWSEGGKEVFISGSFNNWSTKIPLIKSHNDFVAILDLP
       ..::.::: . :   ::::::.::. :::::..:::::::: :.:: .:::.::::::::
NP_006 LAWQHDLEVNDKAPAQARPTVFRWTGGGKEVYLSGSFNNWS-KLPLTRSHNNFVAILDLP
               70        80        90       100        110         

     120       130       140       150       160       170         
pF1KE5 EGEHQYKFFVDGQWVHDPSEPVVTSQLGTINNLIHVKKSDFEVFDALKLDSMESSETSCR
       ::::::::::::::.::::::.:::::::.::.:.:::.:::::::: .::.. :..:  
NP_006 EGEHQYKFFVDGQWTHDPSEPIVTSQLGTVNNIIQVKKTDFEVFDALMVDSQKCSDVS--
     120       130       140       150       160       170         

     180       190       200       210       220       230         
pF1KE5 DLSSSPPGPYGQEMYAFRSEERFKSPPILPPHLLQVILNKDTNISCDPALLPEPNHVMLN
       .::::::::: :: :. . ::::..:::::::::::::::::.:::::::::::::::::
NP_006 ELSSSPPGPYHQEPYVCKPEERFRAPPILPPHLLQVILNKDTGISCDPALLPEPNHVMLN
       180       190       200       210       220       230       

     240       250       260       270  
pF1KE5 HLYALSIKDSVMVLSATHRYKKKYVTTLLYKPI
       :::::::::.:::::::::::::::::::::::
NP_006 HLYALSIKDGVMVLSATHRYKKKYVTTLLYKPI
       240       250       260       270

>>XP_016857186 (OMIM: 602741) PREDICTED: 5'-AMP-activate  (197 aa)
 initn: 963 init1: 963 opt: 963  Z-score: 1103.7  bits: 211.5 E(85289): 9.7e-55
Smith-Waterman score: 963; 100.0% identity (100.0% similar) in 139 aa overlap (1-139:1-139)

               10        20        30        40        50        60
pF1KE5 MGNTTSDRVSGERHGAKAARSEGAGGHAPGKEHKIMVGSTDDPSVFSLPDSKLPGDKEFV
       ::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
XP_016 MGNTTSDRVSGERHGAKAARSEGAGGHAPGKEHKIMVGSTDDPSVFSLPDSKLPGDKEFV
               10        20        30        40        50        60

               70        80        90       100       110       120
pF1KE5 SWQQDLEDSVKPTQQARPTVIRWSEGGKEVFISGSFNNWSTKIPLIKSHNDFVAILDLPE
       ::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
XP_016 SWQQDLEDSVKPTQQARPTVIRWSEGGKEVFISGSFNNWSTKIPLIKSHNDFVAILDLPE
               70        80        90       100       110       120

              130       140       150       160       170       180
pF1KE5 GEHQYKFFVDGQWVHDPSEPVVTSQLGTINNLIHVKKSDFEVFDALKLDSMESSETSCRD
       :::::::::::::::::::                                         
XP_016 GEHQYKFFVDGQWVHDPSETFPAHPQGLMVKKCMRFDLRKDSNPHPSFLLIYFKLFLTKT
              130       140       150       160       170       180




272 residues in 1 query   sequences
60827320 residues in 85289 library sequences
 Tcomplib [36.3.4 Apr, 2011] (8 proc)
 start: Mon Nov  7 23:49:03 2016 done: Mon Nov  7 23:49:04 2016
 Total Scan time:  7.130 Total Display time: -0.010

Function used was FASTA [36.3.4 Apr, 2011]
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