FASTA searches a protein or DNA sequence data bank 36.3.4 Apr, 2011 Please cite: W.R. Pearson & D.J. Lipman PNAS (1988) 85:2444-2448 Query: pF1KE6282, 256 aa 1>>>pF1KE6282 256 - 256 aa - 256 aa Library: /omim/omim.rfq.tfa 60827320 residues in 85289 sequences Statistics: Expectation_n fit: rho(ln(x))= 5.9771+/-0.000365; mu= 12.5207+/- 0.023 mean_var=89.1898+/-17.856, 0's: 0 Z-trim(114.9): 2 B-trim: 27 in 1/56 Lambda= 0.135805 statistics sampled from 24997 (24999) to 24997 sequences Algorithm: FASTA (3.7 Nov 2010) [optimized] Parameters: BL50 matrix (15:-5), open/ext: -10/-2 ktup: 2, E-join: 1 (0.67), E-opt: 0.2 (0.293), width: 16 Scan time: 5.370 The best scores are: opt bits E(85289) NP_001679 (OMIM: 603270) ATP synthase F(0) complex ( 256) 1643 331.6 8.7e-91 >>NP_001679 (OMIM: 603270) ATP synthase F(0) complex sub (256 aa) initn: 1643 init1: 1643 opt: 1643 Z-score: 1750.9 bits: 331.6 E(85289): 8.7e-91 Smith-Waterman score: 1643; 100.0% identity (100.0% similar) in 256 aa overlap (1-256:1-256) 10 20 30 40 50 60 pF1KE6 MLSRVVLSAAATAAPSLKNAAFLGPGVLQATRTFHTGQPHLVPVPPLPEYGGKVRYGLIP :::::::::::::::::::::::::::::::::::::::::::::::::::::::::::: NP_001 MLSRVVLSAAATAAPSLKNAAFLGPGVLQATRTFHTGQPHLVPVPPLPEYGGKVRYGLIP 10 20 30 40 50 60 70 80 90 100 110 120 pF1KE6 EEFFQFLYPKTGVTGPYVLGTGLILYALSKEIYVISAETFTALSVLGVMVYGIKKYGPFV :::::::::::::::::::::::::::::::::::::::::::::::::::::::::::: NP_001 EEFFQFLYPKTGVTGPYVLGTGLILYALSKEIYVISAETFTALSVLGVMVYGIKKYGPFV 70 80 90 100 110 120 130 140 150 160 170 180 pF1KE6 ADFADKLNEQKLAQLEEAKQASIQHIQNAIDTEKSQQALVQKRHYLFDVQRNNIAMALEV :::::::::::::::::::::::::::::::::::::::::::::::::::::::::::: NP_001 ADFADKLNEQKLAQLEEAKQASIQHIQNAIDTEKSQQALVQKRHYLFDVQRNNIAMALEV 130 140 150 160 170 180 190 200 210 220 230 240 pF1KE6 TYRERLYRVYKEVKNRLDYHISVQNMMRRKEQEHMINWVEKHVVQSISTQQEKETIAKCI :::::::::::::::::::::::::::::::::::::::::::::::::::::::::::: NP_001 TYRERLYRVYKEVKNRLDYHISVQNMMRRKEQEHMINWVEKHVVQSISTQQEKETIAKCI 190 200 210 220 230 240 250 pF1KE6 ADLKLLAKKAQAQPVM :::::::::::::::: NP_001 ADLKLLAKKAQAQPVM 250 256 residues in 1 query sequences 60827320 residues in 85289 library sequences Tcomplib [36.3.4 Apr, 2011] (8 proc) start: Tue Nov 8 11:45:19 2016 done: Tue Nov 8 11:45:20 2016 Total Scan time: 5.370 Total Display time: -0.020 Function used was FASTA [36.3.4 Apr, 2011]