FASTA searches a protein or DNA sequence data bank 36.3.4 Apr, 2011 Please cite: W.R. Pearson & D.J. Lipman PNAS (1988) 85:2444-2448 Query: pF1KB7679, 342 aa 1>>>pF1KB7679 342 - 342 aa - 342 aa Library: /omim/omim.rfq.tfa 60827320 residues in 85289 sequences Statistics: Expectation_n fit: rho(ln(x))= 11.8881+/-0.000391; mu= -10.7893+/- 0.024 mean_var=544.0946+/-113.294, 0's: 0 Z-trim(126.3): 47 B-trim: 936 in 1/61 Lambda= 0.054984 statistics sampled from 52067 (52122) to 52067 sequences Algorithm: FASTA (3.7 Nov 2010) [optimized] Parameters: BL50 matrix (15:-5), open/ext: -10/-2 ktup: 2, E-join: 1 (0.857), E-opt: 0.2 (0.611), width: 16 Scan time: 7.740 The best scores are: opt bits E(85289) NP_149056 (OMIM: 614805) doublesex- and mab-3-rela ( 342) 2474 210.0 6.1e-54 XP_011540239 (OMIM: 614804) PREDICTED: doublesex- ( 542) 337 40.7 0.0089 NP_115486 (OMIM: 614804) doublesex- and mab-3-rela ( 542) 337 40.7 0.0089 >>NP_149056 (OMIM: 614805) doublesex- and mab-3-related (342 aa) initn: 2474 init1: 2474 opt: 2474 Z-score: 1089.4 bits: 210.0 E(85289): 6.1e-54 Smith-Waterman score: 2474; 100.0% identity (100.0% similar) in 342 aa overlap (1-342:1-342) 10 20 30 40 50 60 pF1KB7 MADKMVRTPKCSRCRNHGFLVPVKGHAGKCRWKQCLCEKCYLISERQKIMAAQKVLKTQA :::::::::::::::::::::::::::::::::::::::::::::::::::::::::::: NP_149 MADKMVRTPKCSRCRNHGFLVPVKGHAGKCRWKQCLCEKCYLISERQKIMAAQKVLKTQA 10 20 30 40 50 60 70 80 90 100 110 120 pF1KB7 AEEEQEAALCAQGPKQASGAAAAAPAPVPVPAASLRPLSPGTPSGDADPGPEGRAAACFF :::::::::::::::::::::::::::::::::::::::::::::::::::::::::::: NP_149 AEEEQEAALCAQGPKQASGAAAAAPAPVPVPAASLRPLSPGTPSGDADPGPEGRAAACFF 70 80 90 100 110 120 130 140 150 160 170 180 pF1KB7 EQPPRGRNPGPRALQPVLGGRSHVEPSERAAVAMPSLAGPPFGAEAAGSGYPGPLDLRRP :::::::::::::::::::::::::::::::::::::::::::::::::::::::::::: NP_149 EQPPRGRNPGPRALQPVLGGRSHVEPSERAAVAMPSLAGPPFGAEAAGSGYPGPLDLRRP 130 140 150 160 170 180 190 200 210 220 230 240 pF1KB7 MRTVPGPLFTDFVRPLNINPDRALGPEYPGGSSMHPYCPFPLGYLDAPPGVPLQQGFRHV :::::::::::::::::::::::::::::::::::::::::::::::::::::::::::: NP_149 MRTVPGPLFTDFVRPLNINPDRALGPEYPGGSSMHPYCPFPLGYLDAPPGVPLQQGFRHV 190 200 210 220 230 240 250 260 270 280 290 300 pF1KB7 SRSQYQGGGLVSEPGGDFQPSYYLPPPPPPLPPLPPLPPQPQFLPPGYLSALHFLPPPPP :::::::::::::::::::::::::::::::::::::::::::::::::::::::::::: NP_149 SRSQYQGGGLVSEPGGDFQPSYYLPPPPPPLPPLPPLPPQPQFLPPGYLSALHFLPPPPP 250 260 270 280 290 300 310 320 330 340 pF1KB7 PPPPSSFSLTVLFDTDKENTDDQDAEVLSGEPSQPSSQEQSD :::::::::::::::::::::::::::::::::::::::::: NP_149 PPPPSSFSLTVLFDTDKENTDDQDAEVLSGEPSQPSSQEQSD 310 320 330 340 >>XP_011540239 (OMIM: 614804) PREDICTED: doublesex- and (542 aa) initn: 362 init1: 321 opt: 337 Z-score: 170.9 bits: 40.7 E(85289): 0.0089 Smith-Waterman score: 345; 32.0% identity (49.0% similar) in 259 aa overlap (2-239:61-313) 10 20 30 pF1KB7 MADKMVRTPKCSRCRNHGFLVPVKGHAGKCR :.:. :::::.:::::: . .::: :: XP_011 SVAAAAAAAASLPVSVAGGLLRGPPLLLRAAEKYPRTPKCARCRNHGVVSALKGHKRYCR 40 50 60 70 80 90 40 50 60 70 80 pF1KB7 WKQCLCEKCYLISERQKIMAAQKVLKTQAAEEEQEAALCAQGPKQASGAAAAAPAPV--P ::.::: :: ::.:::..:::: .:. : :.::.:: : : : :: . : XP_011 WKDCLCAKCTLIAERQRVMAAQVALRRQQAQEENEARELQLLYGTAEGLALAAANGIIPP 100 110 120 130 140 150 90 100 110 120 130 pF1KB7 VPA----ASLRPLSPGTPSGDADPGPEGRAAACF--------FEQPPR-----GR--NPG :: .:. . : :.. : : : ::. :. :. :: .: XP_011 RPAYEVFGSVCAADGGGPGAGAPAGTGGGAAGAGGSEAKLQKFDLFPKTLLQAGRPGSPL 160 170 180 190 200 210 140 150 160 170 180 190 pF1KB7 PRALQPVLGGRSHVEPSERAAVAMPSLAGPPFGAEAAGSGYPGPLDLRRPMRTVPGPLFT : ..:. . :. . . :. .: : . :: : .. . :: XP_011 PPPVKPLSPDGADSGPGTSSPEVRPG-SGSENGDGESFSGSPLARASKEAGGSCPGS--- 220 230 240 250 260 200 210 220 230 240 250 pF1KB7 DFVRPLNINPDRALGPEYPGGSSMHPYCPFPLGYLDAPPGVPLQQGFRHVSRSQYQGGGL . : . . . . : : :: : ::. .: :. XP_011 --AGPGGGGEEDSPGSASPLGSESGSEADKEEGEAAPAPGLGGGSGPRQRTPLDILTRVF 270 280 290 300 310 320 260 270 280 290 300 310 pF1KB7 VSEPGGDFQPSYYLPPPPPPLPPLPPLPPQPQFLPPGYLSALHFLPPPPPPPPPSSFSLT XP_011 PGHRRGVLELVLQGCGGDVVQAIEQVLNHHRGGLAAGLGPAAPPDKAAVGAAAAADDAWP 330 340 350 360 370 380 >>NP_115486 (OMIM: 614804) doublesex- and mab-3-related (542 aa) initn: 362 init1: 321 opt: 337 Z-score: 170.9 bits: 40.7 E(85289): 0.0089 Smith-Waterman score: 345; 32.0% identity (49.0% similar) in 259 aa overlap (2-239:61-313) 10 20 30 pF1KB7 MADKMVRTPKCSRCRNHGFLVPVKGHAGKCR :.:. :::::.:::::: . .::: :: NP_115 SVAAAAAAAASLPVSVAGGLLRGPPLLLRAAEKYPRTPKCARCRNHGVVSALKGHKRYCR 40 50 60 70 80 90 40 50 60 70 80 pF1KB7 WKQCLCEKCYLISERQKIMAAQKVLKTQAAEEEQEAALCAQGPKQASGAAAAAPAPV--P ::.::: :: ::.:::..:::: .:. : :.::.:: : : : :: . : NP_115 WKDCLCAKCTLIAERQRVMAAQVALRRQQAQEENEARELQLLYGTAEGLALAAANGIIPP 100 110 120 130 140 150 90 100 110 120 130 pF1KB7 VPA----ASLRPLSPGTPSGDADPGPEGRAAACF--------FEQPPR-----GR--NPG :: .:. . : :.. : : : ::. :. :. :: .: NP_115 RPAYEVFGSVCAADGGGPGAGAPAGTGGGAAGAGGSEAKLQKFDLFPKTLLQAGRPGSPL 160 170 180 190 200 210 140 150 160 170 180 190 pF1KB7 PRALQPVLGGRSHVEPSERAAVAMPSLAGPPFGAEAAGSGYPGPLDLRRPMRTVPGPLFT : ..:. . :. . . :. .: : . :: : .. . :: NP_115 PPPVKPLSPDGADSGPGTSSPEVRPG-SGSENGDGESFSGSPLARASKEAGGSCPGS--- 220 230 240 250 260 200 210 220 230 240 250 pF1KB7 DFVRPLNINPDRALGPEYPGGSSMHPYCPFPLGYLDAPPGVPLQQGFRHVSRSQYQGGGL . : . . . . : : :: : ::. .: :. NP_115 --AGPGGGGEEDSPGSASPLGSESGSEADKEEGEAAPAPGLGGGSGPRQRTPLDILTRVF 270 280 290 300 310 320 260 270 280 290 300 310 pF1KB7 VSEPGGDFQPSYYLPPPPPPLPPLPPLPPQPQFLPPGYLSALHFLPPPPPPPPPSSFSLT NP_115 PGHRRGVLELVLQGCGGDVVQAIEQVLNHHRGGLAAGLGPAAPPDKAAVGAAAAADDAWP 330 340 350 360 370 380 342 residues in 1 query sequences 60827320 residues in 85289 library sequences Tcomplib [36.3.4 Apr, 2011] (8 proc) start: Sun Nov 6 05:39:44 2016 done: Sun Nov 6 05:39:45 2016 Total Scan time: 7.740 Total Display time: -0.020 Function used was FASTA [36.3.4 Apr, 2011]