FASTA searches a protein or DNA sequence data bank 36.3.4 Apr, 2011 Please cite: W.R. Pearson & D.J. Lipman PNAS (1988) 85:2444-2448 Query: pF1KB8915, 257 aa 1>>>pF1KB8915 257 - 257 aa - 257 aa Library: /omim/omim.rfq.tfa 60827320 residues in 85289 sequences Statistics: Expectation_n fit: rho(ln(x))= 4.8638+/-0.00027; mu= 18.4498+/- 0.017 mean_var=81.3684+/-17.268, 0's: 0 Z-trim(120.0): 74 B-trim: 1990 in 1/53 Lambda= 0.142183 statistics sampled from 34660 (34743) to 34660 sequences Algorithm: FASTA (3.7 Nov 2010) [optimized] Parameters: BL50 matrix (15:-5), open/ext: -10/-2 ktup: 2, E-join: 1 (0.777), E-opt: 0.2 (0.407), width: 16 Scan time: 7.150 The best scores are: opt bits E(85289) NP_068804 (OMIM: 601665,604630) nuclear receptor s ( 257) 1783 374.6 9.9e-104 XP_011540599 (OMIM: 601665,604630) PREDICTED: nucl ( 207) 1251 265.3 6.1e-71 XP_016862609 (OMIM: 601426) PREDICTED: nuclear rec ( 596) 295 69.7 1.4e-11 NP_001278623 (OMIM: 601426) nuclear receptor subfa ( 596) 295 69.7 1.4e-11 XP_011532366 (OMIM: 601426) PREDICTED: nuclear rec ( 615) 295 69.7 1.4e-11 XP_011532367 (OMIM: 601426) PREDICTED: nuclear rec ( 615) 295 69.7 1.4e-11 NP_003289 (OMIM: 601426) nuclear receptor subfamil ( 615) 295 69.7 1.4e-11 XP_011532368 (OMIM: 601426) PREDICTED: nuclear rec ( 615) 295 69.7 1.4e-11 XP_011532365 (OMIM: 601426) PREDICTED: nuclear rec ( 629) 295 69.7 1.4e-11 XP_011532363 (OMIM: 601426) PREDICTED: nuclear rec ( 648) 295 69.7 1.4e-11 XP_016862608 (OMIM: 601426) PREDICTED: nuclear rec ( 648) 295 69.7 1.4e-11 XP_011532360 (OMIM: 601426) PREDICTED: nuclear rec ( 648) 295 69.7 1.4e-11 XP_011532361 (OMIM: 601426) PREDICTED: nuclear rec ( 648) 295 69.7 1.4e-11 XP_016862607 (OMIM: 601426) PREDICTED: nuclear rec ( 648) 295 69.7 1.4e-11 NP_000466 (OMIM: 300018,300200,300473) nuclear rec ( 470) 293 69.2 1.5e-11 NP_003260 (OMIM: 603849) nuclear receptor subfamil ( 385) 277 65.8 1.3e-10 NP_001273031 (OMIM: 603849) nuclear receptor subfa ( 422) 277 65.9 1.4e-10 NP_001278918 (OMIM: 180246) retinoic acid receptor ( 347) 256 61.5 2.4e-09 XP_016866665 (OMIM: 180246) PREDICTED: retinoic ac ( 414) 256 61.5 2.7e-09 XP_011513098 (OMIM: 180246) PREDICTED: retinoic ac ( 420) 256 61.5 2.7e-09 XP_005249335 (OMIM: 180246) PREDICTED: retinoic ac ( 441) 256 61.6 2.8e-09 NP_001257330 (OMIM: 180246) retinoic acid receptor ( 537) 256 61.7 3.2e-09 XP_016884827 (OMIM: 300018,300200,300473) PREDICTE ( 400) 247 59.7 9.5e-09 NP_005225 (OMIM: 132880) nuclear receptor subfamil ( 404) 240 58.3 2.6e-08 XP_006719648 (OMIM: 601529) PREDICTED: nuclear rec ( 426) 233 56.8 7.2e-08 NP_003288 (OMIM: 601529) nuclear receptor subfamil ( 603) 233 57.0 9.2e-08 XP_016865286 (OMIM: 132890,615722) PREDICTED: COUP ( 273) 222 54.4 2.5e-07 NP_005645 (OMIM: 132890,615722) COUP transcription ( 423) 222 54.6 3.4e-07 NP_001138629 (OMIM: 107773,615779) COUP transcript ( 261) 214 52.7 7.7e-07 NP_001138628 (OMIM: 107773,615779) COUP transcript ( 261) 214 52.7 7.7e-07 NP_001138627 (OMIM: 107773,615779) COUP transcript ( 281) 214 52.8 8.1e-07 NP_066285 (OMIM: 107773,615779) COUP transcription ( 414) 214 52.9 1.1e-06 NP_055064 (OMIM: 268100,604485,611131) photorecept ( 410) 212 52.5 1.4e-06 XP_011537019 (OMIM: 601529) PREDICTED: nuclear rec ( 507) 207 51.6 3.3e-06 NP_001243500 (OMIM: 180247) retinoic acid receptor ( 340) 193 48.5 1.8e-05 NP_001243499 (OMIM: 180247) retinoic acid receptor ( 340) 193 48.5 1.8e-05 XP_005245119 (OMIM: 604453) PREDICTED: nuclear rec ( 469) 194 48.9 2e-05 XP_011507684 (OMIM: 604453) PREDICTED: nuclear rec ( 469) 194 48.9 2e-05 NP_001263393 (OMIM: 604453) nuclear receptor subfa ( 469) 194 48.9 2e-05 NP_003813 (OMIM: 604453) nuclear receptor subfamil ( 495) 194 48.9 2.1e-05 XP_011507682 (OMIM: 604453) PREDICTED: nuclear rec ( 501) 194 48.9 2.1e-05 XP_011507686 (OMIM: 604453) PREDICTED: nuclear rec ( 501) 194 48.9 2.1e-05 XP_016856393 (OMIM: 604453) PREDICTED: nuclear rec ( 501) 194 48.9 2.1e-05 XP_011507683 (OMIM: 604453) PREDICTED: nuclear rec ( 501) 194 48.9 2.1e-05 NP_068811 (OMIM: 180246) retinoic acid receptor RX ( 533) 194 48.9 2.2e-05 NP_995582 (OMIM: 604453) nuclear receptor subfamil ( 541) 194 48.9 2.2e-05 NP_008848 (OMIM: 180247) retinoic acid receptor RX ( 463) 193 48.7 2.3e-05 NP_001278850 (OMIM: 180245) retinoic acid receptor ( 365) 182 46.3 9.2e-05 NP_001278849 (OMIM: 180245) retinoic acid receptor ( 435) 182 46.4 0.0001 NP_002948 (OMIM: 180245) retinoic acid receptor RX ( 462) 182 46.4 0.00011 >>NP_068804 (OMIM: 601665,604630) nuclear receptor subfa (257 aa) initn: 1783 init1: 1783 opt: 1783 Z-score: 1983.2 bits: 374.6 E(85289): 9.9e-104 Smith-Waterman score: 1783; 100.0% identity (100.0% similar) in 257 aa overlap (1-257:1-257) 10 20 30 40 50 60 pF1KB8 MSTSQPGACPCQGAASRPAILYALLSSSLKAVPRPRSRCLCRQHRPVQLCAPHRTCREAL :::::::::::::::::::::::::::::::::::::::::::::::::::::::::::: NP_068 MSTSQPGACPCQGAASRPAILYALLSSSLKAVPRPRSRCLCRQHRPVQLCAPHRTCREAL 10 20 30 40 50 60 70 80 90 100 110 120 pF1KB8 DVLAKTVAFLRNLPSFWQLPPQDQRRLLQGCWGPLFLLGLAQDAVTFEVAEAPVPSILKK :::::::::::::::::::::::::::::::::::::::::::::::::::::::::::: NP_068 DVLAKTVAFLRNLPSFWQLPPQDQRRLLQGCWGPLFLLGLAQDAVTFEVAEAPVPSILKK 70 80 90 100 110 120 130 140 150 160 170 180 pF1KB8 ILLEEPSSSGGSGQLPDRPQPSLAAVQWLQCCLESFWSLELSPKEYACLKGTILFNPDVP :::::::::::::::::::::::::::::::::::::::::::::::::::::::::::: NP_068 ILLEEPSSSGGSGQLPDRPQPSLAAVQWLQCCLESFWSLELSPKEYACLKGTILFNPDVP 130 140 150 160 170 180 190 200 210 220 230 240 pF1KB8 GLQAASHIGHLQQEAHWVLCEVLEPWCPAAQGRLTRVLLTASTLKSIPTSLLGDLFFRPI :::::::::::::::::::::::::::::::::::::::::::::::::::::::::::: NP_068 GLQAASHIGHLQQEAHWVLCEVLEPWCPAAQGRLTRVLLTASTLKSIPTSLLGDLFFRPI 190 200 210 220 230 240 250 pF1KB8 IGDVDIAGLLGDMLLLR ::::::::::::::::: NP_068 IGDVDIAGLLGDMLLLR 250 >>XP_011540599 (OMIM: 601665,604630) PREDICTED: nuclear (207 aa) initn: 1251 init1: 1251 opt: 1251 Z-score: 1394.6 bits: 265.3 E(85289): 6.1e-71 Smith-Waterman score: 1251; 100.0% identity (100.0% similar) in 178 aa overlap (1-178:1-178) 10 20 30 40 50 60 pF1KB8 MSTSQPGACPCQGAASRPAILYALLSSSLKAVPRPRSRCLCRQHRPVQLCAPHRTCREAL :::::::::::::::::::::::::::::::::::::::::::::::::::::::::::: XP_011 MSTSQPGACPCQGAASRPAILYALLSSSLKAVPRPRSRCLCRQHRPVQLCAPHRTCREAL 10 20 30 40 50 60 70 80 90 100 110 120 pF1KB8 DVLAKTVAFLRNLPSFWQLPPQDQRRLLQGCWGPLFLLGLAQDAVTFEVAEAPVPSILKK :::::::::::::::::::::::::::::::::::::::::::::::::::::::::::: XP_011 DVLAKTVAFLRNLPSFWQLPPQDQRRLLQGCWGPLFLLGLAQDAVTFEVAEAPVPSILKK 70 80 90 100 110 120 130 140 150 160 170 180 pF1KB8 ILLEEPSSSGGSGQLPDRPQPSLAAVQWLQCCLESFWSLELSPKEYACLKGTILFNPDVP :::::::::::::::::::::::::::::::::::::::::::::::::::::::::: XP_011 ILLEEPSSSGGSGQLPDRPQPSLAAVQWLQCCLESFWSLELSPKEYACLKGTILFNPDKE 130 140 150 160 170 180 190 200 210 220 230 240 pF1KB8 GLQAASHIGHLQQEAHWVLCEVLEPWCPAAQGRLTRVLLTASTLKSIPTSLLGDLFFRPI XP_011 TEAQRLSDLPKVTQLISDSAGIHTQEA 190 200 >>XP_016862609 (OMIM: 601426) PREDICTED: nuclear recepto (596 aa) initn: 277 init1: 197 opt: 295 Z-score: 329.1 bits: 69.7 E(85289): 1.4e-11 Smith-Waterman score: 295; 29.4% identity (61.3% similar) in 204 aa overlap (53-254:384-580) 30 40 50 60 70 80 pF1KB8 ALLSSSLKAVPRPRSRCLCRQHRPVQLCAPHRTCREALDVLAKTVAFLRNLPSFWQLPPQ : :. : .: .. . :..:.: : . XP_016 IIEVEGPLLSDTHVTFKLTMPSPMPEYLNVHYICESASRLLFLSMHWARSIPAFQALGQD 360 370 380 390 400 410 90 100 110 120 130 140 pF1KB8 DQRRLLQGCWGPLFLLGLAQDA--VTFEVAEAPVPSILKKILLEEPSSSGGSGQLPDRPQ . :...::. :: ::::: : ... . : . . :.. . .: . :: :: . XP_016 CNTSLVRACWNELFTLGLAQCAQVMSLSTILAAIVNHLQNSI-QEDKLSG------DRIK 420 430 440 450 460 150 160 170 180 190 200 pF1KB8 PSLAAVQWLQCCLESFWSLELSPKEYACLKGTILFNPDVPGLQAASHIGHLQQEAHWVLC . . :: .:. .:... ::: ::. .::.:: ::: ..:.: ..:..:. : XP_016 QVMEHIWKLQEFCNSMAKLDIDGYEYAYLKAIVLFSPDHPGLTSTSQIEKFQEKAQMELQ 470 480 490 500 510 520 210 220 230 240 250 pF1KB8 EVLEPWCPAAQGRLTRVLLTASTLKSIPTSLLGDLFFRPIIGDVDIAGLLGDMLLLR . .. ::.:.:. .:. . ... .::: .::.:.: ... .: XP_016 DYVQKTYSEDTYRLARILVRLPALRLMSSNITEELFFTGLIGNVSIDSIIPYILKMETAE 530 540 550 560 570 580 XP_016 YNGQITGASL 590 >>NP_001278623 (OMIM: 601426) nuclear receptor subfamily (596 aa) initn: 277 init1: 197 opt: 295 Z-score: 329.1 bits: 69.7 E(85289): 1.4e-11 Smith-Waterman score: 295; 29.4% identity (61.3% similar) in 204 aa overlap (53-254:384-580) 30 40 50 60 70 80 pF1KB8 ALLSSSLKAVPRPRSRCLCRQHRPVQLCAPHRTCREALDVLAKTVAFLRNLPSFWQLPPQ : :. : .: .. . :..:.: : . NP_001 IIEVEGPLLSDTHVTFKLTMPSPMPEYLNVHYICESASRLLFLSMHWARSIPAFQALGQD 360 370 380 390 400 410 90 100 110 120 130 140 pF1KB8 DQRRLLQGCWGPLFLLGLAQDA--VTFEVAEAPVPSILKKILLEEPSSSGGSGQLPDRPQ . :...::. :: ::::: : ... . : . . :.. . .: . :: :: . NP_001 CNTSLVRACWNELFTLGLAQCAQVMSLSTILAAIVNHLQNSI-QEDKLSG------DRIK 420 430 440 450 460 150 160 170 180 190 200 pF1KB8 PSLAAVQWLQCCLESFWSLELSPKEYACLKGTILFNPDVPGLQAASHIGHLQQEAHWVLC . . :: .:. .:... ::: ::. .::.:: ::: ..:.: ..:..:. : NP_001 QVMEHIWKLQEFCNSMAKLDIDGYEYAYLKAIVLFSPDHPGLTSTSQIEKFQEKAQMELQ 470 480 490 500 510 520 210 220 230 240 250 pF1KB8 EVLEPWCPAAQGRLTRVLLTASTLKSIPTSLLGDLFFRPIIGDVDIAGLLGDMLLLR . .. ::.:.:. .:. . ... .::: .::.:.: ... .: NP_001 DYVQKTYSEDTYRLARILVRLPALRLMSSNITEELFFTGLIGNVSIDSIIPYILKMETAE 530 540 550 560 570 580 NP_001 YNGQITGASL 590 >>XP_011532366 (OMIM: 601426) PREDICTED: nuclear recepto (615 aa) initn: 277 init1: 197 opt: 295 Z-score: 329.0 bits: 69.7 E(85289): 1.4e-11 Smith-Waterman score: 295; 29.4% identity (61.3% similar) in 204 aa overlap (53-254:403-599) 30 40 50 60 70 80 pF1KB8 ALLSSSLKAVPRPRSRCLCRQHRPVQLCAPHRTCREALDVLAKTVAFLRNLPSFWQLPPQ : :. : .: .. . :..:.: : . XP_011 IIEVEGPLLSDTHVTFKLTMPSPMPEYLNVHYICESASRLLFLSMHWARSIPAFQALGQD 380 390 400 410 420 430 90 100 110 120 130 140 pF1KB8 DQRRLLQGCWGPLFLLGLAQDA--VTFEVAEAPVPSILKKILLEEPSSSGGSGQLPDRPQ . :...::. :: ::::: : ... . : . . :.. . .: . :: :: . XP_011 CNTSLVRACWNELFTLGLAQCAQVMSLSTILAAIVNHLQNSI-QEDKLSG------DRIK 440 450 460 470 480 150 160 170 180 190 200 pF1KB8 PSLAAVQWLQCCLESFWSLELSPKEYACLKGTILFNPDVPGLQAASHIGHLQQEAHWVLC . . :: .:. .:... ::: ::. .::.:: ::: ..:.: ..:..:. : XP_011 QVMEHIWKLQEFCNSMAKLDIDGYEYAYLKAIVLFSPDHPGLTSTSQIEKFQEKAQMELQ 490 500 510 520 530 540 210 220 230 240 250 pF1KB8 EVLEPWCPAAQGRLTRVLLTASTLKSIPTSLLGDLFFRPIIGDVDIAGLLGDMLLLR . .. ::.:.:. .:. . ... .::: .::.:.: ... .: XP_011 DYVQKTYSEDTYRLARILVRLPALRLMSSNITEELFFTGLIGNVSIDSIIPYILKMETAE 550 560 570 580 590 600 XP_011 YNGQITGASL 610 >>XP_011532367 (OMIM: 601426) PREDICTED: nuclear recepto (615 aa) initn: 277 init1: 197 opt: 295 Z-score: 329.0 bits: 69.7 E(85289): 1.4e-11 Smith-Waterman score: 295; 29.4% identity (61.3% similar) in 204 aa overlap (53-254:403-599) 30 40 50 60 70 80 pF1KB8 ALLSSSLKAVPRPRSRCLCRQHRPVQLCAPHRTCREALDVLAKTVAFLRNLPSFWQLPPQ : :. : .: .. . :..:.: : . XP_011 IIEVEGPLLSDTHVTFKLTMPSPMPEYLNVHYICESASRLLFLSMHWARSIPAFQALGQD 380 390 400 410 420 430 90 100 110 120 130 140 pF1KB8 DQRRLLQGCWGPLFLLGLAQDA--VTFEVAEAPVPSILKKILLEEPSSSGGSGQLPDRPQ . :...::. :: ::::: : ... . : . . :.. . .: . :: :: . XP_011 CNTSLVRACWNELFTLGLAQCAQVMSLSTILAAIVNHLQNSI-QEDKLSG------DRIK 440 450 460 470 480 150 160 170 180 190 200 pF1KB8 PSLAAVQWLQCCLESFWSLELSPKEYACLKGTILFNPDVPGLQAASHIGHLQQEAHWVLC . . :: .:. .:... ::: ::. .::.:: ::: ..:.: ..:..:. : XP_011 QVMEHIWKLQEFCNSMAKLDIDGYEYAYLKAIVLFSPDHPGLTSTSQIEKFQEKAQMELQ 490 500 510 520 530 540 210 220 230 240 250 pF1KB8 EVLEPWCPAAQGRLTRVLLTASTLKSIPTSLLGDLFFRPIIGDVDIAGLLGDMLLLR . .. ::.:.:. .:. . ... .::: .::.:.: ... .: XP_011 DYVQKTYSEDTYRLARILVRLPALRLMSSNITEELFFTGLIGNVSIDSIIPYILKMETAE 550 560 570 580 590 600 XP_011 YNGQITGASL 610 >>NP_003289 (OMIM: 601426) nuclear receptor subfamily 2 (615 aa) initn: 277 init1: 197 opt: 295 Z-score: 329.0 bits: 69.7 E(85289): 1.4e-11 Smith-Waterman score: 295; 29.4% identity (61.3% similar) in 204 aa overlap (53-254:403-599) 30 40 50 60 70 80 pF1KB8 ALLSSSLKAVPRPRSRCLCRQHRPVQLCAPHRTCREALDVLAKTVAFLRNLPSFWQLPPQ : :. : .: .. . :..:.: : . NP_003 IIEVEGPLLSDTHVTFKLTMPSPMPEYLNVHYICESASRLLFLSMHWARSIPAFQALGQD 380 390 400 410 420 430 90 100 110 120 130 140 pF1KB8 DQRRLLQGCWGPLFLLGLAQDA--VTFEVAEAPVPSILKKILLEEPSSSGGSGQLPDRPQ . :...::. :: ::::: : ... . : . . :.. . .: . :: :: . NP_003 CNTSLVRACWNELFTLGLAQCAQVMSLSTILAAIVNHLQNSI-QEDKLSG------DRIK 440 450 460 470 480 150 160 170 180 190 200 pF1KB8 PSLAAVQWLQCCLESFWSLELSPKEYACLKGTILFNPDVPGLQAASHIGHLQQEAHWVLC . . :: .:. .:... ::: ::. .::.:: ::: ..:.: ..:..:. : NP_003 QVMEHIWKLQEFCNSMAKLDIDGYEYAYLKAIVLFSPDHPGLTSTSQIEKFQEKAQMELQ 490 500 510 520 530 540 210 220 230 240 250 pF1KB8 EVLEPWCPAAQGRLTRVLLTASTLKSIPTSLLGDLFFRPIIGDVDIAGLLGDMLLLR . .. ::.:.:. .:. . ... .::: .::.:.: ... .: NP_003 DYVQKTYSEDTYRLARILVRLPALRLMSSNITEELFFTGLIGNVSIDSIIPYILKMETAE 550 560 570 580 590 600 NP_003 YNGQITGASL 610 >>XP_011532368 (OMIM: 601426) PREDICTED: nuclear recepto (615 aa) initn: 277 init1: 197 opt: 295 Z-score: 329.0 bits: 69.7 E(85289): 1.4e-11 Smith-Waterman score: 295; 29.4% identity (61.3% similar) in 204 aa overlap (53-254:403-599) 30 40 50 60 70 80 pF1KB8 ALLSSSLKAVPRPRSRCLCRQHRPVQLCAPHRTCREALDVLAKTVAFLRNLPSFWQLPPQ : :. : .: .. . :..:.: : . XP_011 IIEVEGPLLSDTHVTFKLTMPSPMPEYLNVHYICESASRLLFLSMHWARSIPAFQALGQD 380 390 400 410 420 430 90 100 110 120 130 140 pF1KB8 DQRRLLQGCWGPLFLLGLAQDA--VTFEVAEAPVPSILKKILLEEPSSSGGSGQLPDRPQ . :...::. :: ::::: : ... . : . . :.. . .: . :: :: . XP_011 CNTSLVRACWNELFTLGLAQCAQVMSLSTILAAIVNHLQNSI-QEDKLSG------DRIK 440 450 460 470 480 150 160 170 180 190 200 pF1KB8 PSLAAVQWLQCCLESFWSLELSPKEYACLKGTILFNPDVPGLQAASHIGHLQQEAHWVLC . . :: .:. .:... ::: ::. .::.:: ::: ..:.: ..:..:. : XP_011 QVMEHIWKLQEFCNSMAKLDIDGYEYAYLKAIVLFSPDHPGLTSTSQIEKFQEKAQMELQ 490 500 510 520 530 540 210 220 230 240 250 pF1KB8 EVLEPWCPAAQGRLTRVLLTASTLKSIPTSLLGDLFFRPIIGDVDIAGLLGDMLLLR . .. ::.:.:. .:. . ... .::: .::.:.: ... .: XP_011 DYVQKTYSEDTYRLARILVRLPALRLMSSNITEELFFTGLIGNVSIDSIIPYILKMETAE 550 560 570 580 590 600 XP_011 YNGQITGASL 610 >>XP_011532365 (OMIM: 601426) PREDICTED: nuclear recepto (629 aa) initn: 277 init1: 197 opt: 295 Z-score: 328.8 bits: 69.7 E(85289): 1.4e-11 Smith-Waterman score: 295; 29.4% identity (61.3% similar) in 204 aa overlap (53-254:417-613) 30 40 50 60 70 80 pF1KB8 ALLSSSLKAVPRPRSRCLCRQHRPVQLCAPHRTCREALDVLAKTVAFLRNLPSFWQLPPQ : :. : .: .. . :..:.: : . XP_011 IIEVEGPLLSDTHVTFKLTMPSPMPEYLNVHYICESASRLLFLSMHWARSIPAFQALGQD 390 400 410 420 430 440 90 100 110 120 130 140 pF1KB8 DQRRLLQGCWGPLFLLGLAQDA--VTFEVAEAPVPSILKKILLEEPSSSGGSGQLPDRPQ . :...::. :: ::::: : ... . : . . :.. . .: . :: :: . XP_011 CNTSLVRACWNELFTLGLAQCAQVMSLSTILAAIVNHLQNSI-QEDKLSG------DRIK 450 460 470 480 490 150 160 170 180 190 200 pF1KB8 PSLAAVQWLQCCLESFWSLELSPKEYACLKGTILFNPDVPGLQAASHIGHLQQEAHWVLC . . :: .:. .:... ::: ::. .::.:: ::: ..:.: ..:..:. : XP_011 QVMEHIWKLQEFCNSMAKLDIDGYEYAYLKAIVLFSPDHPGLTSTSQIEKFQEKAQMELQ 500 510 520 530 540 550 210 220 230 240 250 pF1KB8 EVLEPWCPAAQGRLTRVLLTASTLKSIPTSLLGDLFFRPIIGDVDIAGLLGDMLLLR . .. ::.:.:. .:. . ... .::: .::.:.: ... .: XP_011 DYVQKTYSEDTYRLARILVRLPALRLMSSNITEELFFTGLIGNVSIDSIIPYILKMETAE 560 570 580 590 600 610 XP_011 YNGQITGASL 620 >>XP_011532363 (OMIM: 601426) PREDICTED: nuclear recepto (648 aa) initn: 277 init1: 197 opt: 295 Z-score: 328.7 bits: 69.7 E(85289): 1.4e-11 Smith-Waterman score: 295; 29.4% identity (61.3% similar) in 204 aa overlap (53-254:436-632) 30 40 50 60 70 80 pF1KB8 ALLSSSLKAVPRPRSRCLCRQHRPVQLCAPHRTCREALDVLAKTVAFLRNLPSFWQLPPQ : :. : .: .. . :..:.: : . XP_011 IIEVEGPLLSDTHVTFKLTMPSPMPEYLNVHYICESASRLLFLSMHWARSIPAFQALGQD 410 420 430 440 450 460 90 100 110 120 130 140 pF1KB8 DQRRLLQGCWGPLFLLGLAQDA--VTFEVAEAPVPSILKKILLEEPSSSGGSGQLPDRPQ . :...::. :: ::::: : ... . : . . :.. . .: . :: :: . XP_011 CNTSLVRACWNELFTLGLAQCAQVMSLSTILAAIVNHLQNSI-QEDKLSG------DRIK 470 480 490 500 510 150 160 170 180 190 200 pF1KB8 PSLAAVQWLQCCLESFWSLELSPKEYACLKGTILFNPDVPGLQAASHIGHLQQEAHWVLC . . :: .:. .:... ::: ::. .::.:: ::: ..:.: ..:..:. : XP_011 QVMEHIWKLQEFCNSMAKLDIDGYEYAYLKAIVLFSPDHPGLTSTSQIEKFQEKAQMELQ 520 530 540 550 560 570 210 220 230 240 250 pF1KB8 EVLEPWCPAAQGRLTRVLLTASTLKSIPTSLLGDLFFRPIIGDVDIAGLLGDMLLLR . .. ::.:.:. .:. . ... .::: .::.:.: ... .: XP_011 DYVQKTYSEDTYRLARILVRLPALRLMSSNITEELFFTGLIGNVSIDSIIPYILKMETAE 580 590 600 610 620 630 XP_011 YNGQITGASL 640 257 residues in 1 query sequences 60827320 residues in 85289 library sequences Tcomplib [36.3.4 Apr, 2011] (8 proc) start: Sat Nov 5 22:47:12 2016 done: Sat Nov 5 22:47:13 2016 Total Scan time: 7.150 Total Display time: 0.000 Function used was FASTA [36.3.4 Apr, 2011]