FASTA searches a protein or DNA sequence data bank 36.3.4 Apr, 2011 Please cite: W.R. Pearson & D.J. Lipman PNAS (1988) 85:2444-2448 Query: pF1KE1895, 417 aa 1>>>pF1KE1895 417 - 417 aa - 417 aa Library: human.CCDS.faa 18511270 residues in 32554 sequences Statistics: Expectation_n fit: rho(ln(x))= 7.3618+/-0.000849; mu= 10.5726+/- 0.051 mean_var=200.7861+/-38.695, 0's: 0 Z-trim(114.7): 48 B-trim: 8 in 1/53 Lambda= 0.090512 statistics sampled from 15247 (15293) to 15247 sequences Algorithm: FASTA (3.7 Nov 2010) [optimized] Parameters: BL50 matrix (15:-5), open/ext: -10/-2 ktup: 2, E-join: 1 (0.795), E-opt: 0.2 (0.47), width: 16 Scan time: 3.400 The best scores are: opt bits E(32554) CCDS71.1 TNFRSF25 gene_id:8718|Hs108|chr1 ( 417) 3046 409.9 2.3e-114 CCDS74.1 TNFRSF25 gene_id:8718|Hs108|chr1 ( 372) 2314 314.3 1.3e-85 CCDS73.1 TNFRSF25 gene_id:8718|Hs108|chr1 ( 380) 1531 212.0 7.7e-55 CCDS72.1 TNFRSF25 gene_id:8718|Hs108|chr1 ( 426) 1512 209.6 4.6e-54 CCDS75.1 TNFRSF25 gene_id:8718|Hs108|chr1 ( 234) 1260 176.4 2.5e-44 >>CCDS71.1 TNFRSF25 gene_id:8718|Hs108|chr1 (417 aa) initn: 3046 init1: 3046 opt: 3046 Z-score: 2166.7 bits: 409.9 E(32554): 2.3e-114 Smith-Waterman score: 3046; 100.0% identity (100.0% similar) in 417 aa overlap (1-417:1-417) 10 20 30 40 50 60 pF1KE1 MEQRPRGCAAVAAALLLVLLGARAQGGTRSPRCDCAGDFHKKIGLFCCRGCPAGHYLKAP :::::::::::::::::::::::::::::::::::::::::::::::::::::::::::: CCDS71 MEQRPRGCAAVAAALLLVLLGARAQGGTRSPRCDCAGDFHKKIGLFCCRGCPAGHYLKAP 10 20 30 40 50 60 70 80 90 100 110 120 pF1KE1 CTEPCGNSTCLVCPQDTFLAWENHHNSECARCQACDEQASQVALENCSAVADTRCGCKPG :::::::::::::::::::::::::::::::::::::::::::::::::::::::::::: CCDS71 CTEPCGNSTCLVCPQDTFLAWENHHNSECARCQACDEQASQVALENCSAVADTRCGCKPG 70 80 90 100 110 120 130 140 150 160 170 180 pF1KE1 WFVECQVSQCVSSSPFYCQPCLDCGALHRHTRLLCSRRDTDCGTCLPGFYEHGDGCVSCP :::::::::::::::::::::::::::::::::::::::::::::::::::::::::::: CCDS71 WFVECQVSQCVSSSPFYCQPCLDCGALHRHTRLLCSRRDTDCGTCLPGFYEHGDGCVSCP 130 140 150 160 170 180 190 200 210 220 230 240 pF1KE1 TSTLGSCPERCAAVCGWRQMFWVQVLLAGLVVPLLLGATLTYTYRHCWPHKPLVTADEAG :::::::::::::::::::::::::::::::::::::::::::::::::::::::::::: CCDS71 TSTLGSCPERCAAVCGWRQMFWVQVLLAGLVVPLLLGATLTYTYRHCWPHKPLVTADEAG 190 200 210 220 230 240 250 260 270 280 290 300 pF1KE1 MEALTPPPATHLSPLDSAHTLLAPPDSSEKICTVQLVGNSWTPGYPETQEALCPQVTWSW :::::::::::::::::::::::::::::::::::::::::::::::::::::::::::: CCDS71 MEALTPPPATHLSPLDSAHTLLAPPDSSEKICTVQLVGNSWTPGYPETQEALCPQVTWSW 250 260 270 280 290 300 310 320 330 340 350 360 pF1KE1 DQLPSRALGPAAAPTLSPESPAGSPAMMLQPGPQLYDVMDAVPARRWKEFVRTLGLREAE :::::::::::::::::::::::::::::::::::::::::::::::::::::::::::: CCDS71 DQLPSRALGPAAAPTLSPESPAGSPAMMLQPGPQLYDVMDAVPARRWKEFVRTLGLREAE 310 320 330 340 350 360 370 380 390 400 410 pF1KE1 IEAVEVEIGRFRDQQYEMLKRWRQQQPAGLGAVYAALERMGLDGCVEDLRSRLQRGP ::::::::::::::::::::::::::::::::::::::::::::::::::::::::: CCDS71 IEAVEVEIGRFRDQQYEMLKRWRQQQPAGLGAVYAALERMGLDGCVEDLRSRLQRGP 370 380 390 400 410 >>CCDS74.1 TNFRSF25 gene_id:8718|Hs108|chr1 (372 aa) initn: 2674 init1: 2301 opt: 2314 Z-score: 1650.7 bits: 314.3 E(32554): 1.3e-85 Smith-Waterman score: 2588; 89.2% identity (89.2% similar) in 417 aa overlap (1-417:1-372) 10 20 30 40 50 60 pF1KE1 MEQRPRGCAAVAAALLLVLLGARAQGGTRSPRCDCAGDFHKKIGLFCCRGCPAGHYLKAP ::::::::::::::::::::::::::::::::::::::::::::::::::::: CCDS74 MEQRPRGCAAVAAALLLVLLGARAQGGTRSPRCDCAGDFHKKIGLFCCRGCPA------- 10 20 30 40 50 70 80 90 100 110 120 pF1KE1 CTEPCGNSTCLVCPQDTFLAWENHHNSECARCQACDEQASQVALENCSAVADTRCGCKPG :::::::::::::::::::::: CCDS74 --------------------------------------ASQVALENCSAVADTRCGCKPG 60 70 130 140 150 160 170 180 pF1KE1 WFVECQVSQCVSSSPFYCQPCLDCGALHRHTRLLCSRRDTDCGTCLPGFYEHGDGCVSCP :::::::::::::::::::::::::::::::::::::::::::::::::::::::::::: CCDS74 WFVECQVSQCVSSSPFYCQPCLDCGALHRHTRLLCSRRDTDCGTCLPGFYEHGDGCVSCP 80 90 100 110 120 130 190 200 210 220 230 240 pF1KE1 TSTLGSCPERCAAVCGWRQMFWVQVLLAGLVVPLLLGATLTYTYRHCWPHKPLVTADEAG :::::::::::::::::::::::::::::::::::::::::::::::::::::::::::: CCDS74 TSTLGSCPERCAAVCGWRQMFWVQVLLAGLVVPLLLGATLTYTYRHCWPHKPLVTADEAG 140 150 160 170 180 190 250 260 270 280 290 300 pF1KE1 MEALTPPPATHLSPLDSAHTLLAPPDSSEKICTVQLVGNSWTPGYPETQEALCPQVTWSW :::::::::::::::::::::::::::::::::::::::::::::::::::::::::::: CCDS74 MEALTPPPATHLSPLDSAHTLLAPPDSSEKICTVQLVGNSWTPGYPETQEALCPQVTWSW 200 210 220 230 240 250 310 320 330 340 350 360 pF1KE1 DQLPSRALGPAAAPTLSPESPAGSPAMMLQPGPQLYDVMDAVPARRWKEFVRTLGLREAE :::::::::::::::::::::::::::::::::::::::::::::::::::::::::::: CCDS74 DQLPSRALGPAAAPTLSPESPAGSPAMMLQPGPQLYDVMDAVPARRWKEFVRTLGLREAE 260 270 280 290 300 310 370 380 390 400 410 pF1KE1 IEAVEVEIGRFRDQQYEMLKRWRQQQPAGLGAVYAALERMGLDGCVEDLRSRLQRGP ::::::::::::::::::::::::::::::::::::::::::::::::::::::::: CCDS74 IEAVEVEIGRFRDQQYEMLKRWRQQQPAGLGAVYAALERMGLDGCVEDLRSRLQRGP 320 330 340 350 360 370 >>CCDS73.1 TNFRSF25 gene_id:8718|Hs108|chr1 (380 aa) initn: 2766 init1: 1531 opt: 1531 Z-score: 1098.0 bits: 212.0 E(32554): 7.7e-55 Smith-Waterman score: 2696; 90.9% identity (91.1% similar) in 417 aa overlap (1-417:1-380) 10 20 30 40 50 60 pF1KE1 MEQRPRGCAAVAAALLLVLLGARAQGGTRSPRCDCAGDFHKKIGLFCCRGCPAGHYLKAP :::::::::::::::::::::::::::::::::::::::::::::::::::::::::::: CCDS73 MEQRPRGCAAVAAALLLVLLGARAQGGTRSPRCDCAGDFHKKIGLFCCRGCPAGHYLKAP 10 20 30 40 50 60 70 80 90 100 110 120 pF1KE1 CTEPCGNSTCLVCPQDTFLAWENHHNSECARCQACDEQASQVALENCSAVADTRCGCKPG :::::::::::::::::::::::::::::::::::::::::::::::::::::::::::: CCDS73 CTEPCGNSTCLVCPQDTFLAWENHHNSECARCQACDEQASQVALENCSAVADTRCGCKPG 70 80 90 100 110 120 130 140 150 160 170 180 pF1KE1 WFVECQVSQCVSSSPFYCQPCLDCGALHRHTRLLCSRRDTDCGTCLPGFYEHGDGCVSCP :::::::::::::::::::::::::::::::::::::::::::::::::::::::::::: CCDS73 WFVECQVSQCVSSSPFYCQPCLDCGALHRHTRLLCSRRDTDCGTCLPGFYEHGDGCVSCP 130 140 150 160 170 180 190 200 210 220 230 240 pF1KE1 TSTLGSCPERCAAVCGWRQMFWVQVLLAGLVVPLLLGATLTYTYRHCWPHKPLVTADEAG ::::::::::::::::::: .::: CCDS73 TSTLGSCPERCAAVCGWRQ-------------------------------------NEAG 190 200 250 260 270 280 290 300 pF1KE1 MEALTPPPATHLSPLDSAHTLLAPPDSSEKICTVQLVGNSWTPGYPETQEALCPQVTWSW :::::::::::::::::::::::::::::::::::::::::::::::::::::::::::: CCDS73 MEALTPPPATHLSPLDSAHTLLAPPDSSEKICTVQLVGNSWTPGYPETQEALCPQVTWSW 210 220 230 240 250 260 310 320 330 340 350 360 pF1KE1 DQLPSRALGPAAAPTLSPESPAGSPAMMLQPGPQLYDVMDAVPARRWKEFVRTLGLREAE :::::::::::::::::::::::::::::::::::::::::::::::::::::::::::: CCDS73 DQLPSRALGPAAAPTLSPESPAGSPAMMLQPGPQLYDVMDAVPARRWKEFVRTLGLREAE 270 280 290 300 310 320 370 380 390 400 410 pF1KE1 IEAVEVEIGRFRDQQYEMLKRWRQQQPAGLGAVYAALERMGLDGCVEDLRSRLQRGP ::::::::::::::::::::::::::::::::::::::::::::::::::::::::: CCDS73 IEAVEVEIGRFRDQQYEMLKRWRQQQPAGLGAVYAALERMGLDGCVEDLRSRLQRGP 330 340 350 360 370 380 >>CCDS72.1 TNFRSF25 gene_id:8718|Hs108|chr1 (426 aa) initn: 2884 init1: 1509 opt: 1512 Z-score: 1084.0 bits: 209.6 E(32554): 4.6e-54 Smith-Waterman score: 2873; 94.6% identity (96.0% similar) in 426 aa overlap (1-417:1-426) 10 20 30 40 50 60 pF1KE1 MEQRPRGCAAVAAALLLVLLGARAQGGTRSPRCDCAGDFHKKIGLFCCRGCPAGHYLKAP :::::::::::::::::::::::::::::::::::::::::::::::::::::::::::: CCDS72 MEQRPRGCAAVAAALLLVLLGARAQGGTRSPRCDCAGDFHKKIGLFCCRGCPAGHYLKAP 10 20 30 40 50 60 70 80 90 100 110 120 pF1KE1 CTEPCGNSTCLVCPQDTFLAWENHHNSECARCQACDEQASQVALENCSAVADTRCGCKPG :::::::::::::::::::::::::::::::::::::::::::::::::::::::::::: CCDS72 CTEPCGNSTCLVCPQDTFLAWENHHNSECARCQACDEQASQVALENCSAVADTRCGCKPG 70 80 90 100 110 120 130 140 150 160 170 180 pF1KE1 WFVECQVSQCVSSSPFYCQPCLDCGALHRHTRLLCSRRDTDCGTCLPGFYEHGDGCVSCP :::::::::::::::::::::::::::::::::::::::::::::::::::::::::::: CCDS72 WFVECQVSQCVSSSPFYCQPCLDCGALHRHTRLLCSRRDTDCGTCLPGFYEHGDGCVSCP 130 140 150 160 170 180 190 200 210 220 230 pF1KE1 TS--TLGSCPERCA------AVCGWR-QMFWVQVLLAGLVVPLLLGATLTYTYRHCWPHK : .:.. : . .: : : .::::::::::::::::::::::::::::::: CCDS72 TPPPSLAGAPWGAVQSAVPLSVAGGRVGVFWVQVLLAGLVVPLLLGATLTYTYRHCWPHK 190 200 210 220 230 240 240 250 260 270 280 290 pF1KE1 PLVTADEAGMEALTPPPATHLSPLDSAHTLLAPPDSSEKICTVQLVGNSWTPGYPETQEA :::::::::::::::::::::::::::::::::::::::::::::::::::::::::::: CCDS72 PLVTADEAGMEALTPPPATHLSPLDSAHTLLAPPDSSEKICTVQLVGNSWTPGYPETQEA 250 260 270 280 290 300 300 310 320 330 340 350 pF1KE1 LCPQVTWSWDQLPSRALGPAAAPTLSPESPAGSPAMMLQPGPQLYDVMDAVPARRWKEFV :::::::::::::::::::::::::::::::::::::::::::::::::::::::::::: CCDS72 LCPQVTWSWDQLPSRALGPAAAPTLSPESPAGSPAMMLQPGPQLYDVMDAVPARRWKEFV 310 320 330 340 350 360 360 370 380 390 400 410 pF1KE1 RTLGLREAEIEAVEVEIGRFRDQQYEMLKRWRQQQPAGLGAVYAALERMGLDGCVEDLRS :::::::::::::::::::::::::::::::::::::::::::::::::::::::::::: CCDS72 RTLGLREAEIEAVEVEIGRFRDQQYEMLKRWRQQQPAGLGAVYAALERMGLDGCVEDLRS 370 380 390 400 410 420 pF1KE1 RLQRGP :::::: CCDS72 RLQRGP >>CCDS75.1 TNFRSF25 gene_id:8718|Hs108|chr1 (234 aa) initn: 1260 init1: 1260 opt: 1260 Z-score: 909.3 bits: 176.4 E(32554): 2.5e-44 Smith-Waterman score: 1266; 56.1% identity (56.1% similar) in 417 aa overlap (1-417:1-234) 10 20 30 40 50 60 pF1KE1 MEQRPRGCAAVAAALLLVLLGARAQGGTRSPRCDCAGDFHKKIGLFCCRGCPAGHYLKAP ::::::::::::::::::::::::::::::::::::::::::::::::::::: CCDS75 MEQRPRGCAAVAAALLLVLLGARAQGGTRSPRCDCAGDFHKKIGLFCCRGCPA------- 10 20 30 40 50 70 80 90 100 110 120 pF1KE1 CTEPCGNSTCLVCPQDTFLAWENHHNSECARCQACDEQASQVALENCSAVADTRCGCKPG CCDS75 ------------------------------------------------------------ 130 140 150 160 170 180 pF1KE1 WFVECQVSQCVSSSPFYCQPCLDCGALHRHTRLLCSRRDTDCGTCLPGFYEHGDGCVSCP CCDS75 ------------------------------------------------------------ 190 200 210 220 230 240 pF1KE1 TSTLGSCPERCAAVCGWRQMFWVQVLLAGLVVPLLLGATLTYTYRHCWPHKPLVTADEAG :::: CCDS75 --------------------------------------------------------DEAG 250 260 270 280 290 300 pF1KE1 MEALTPPPATHLSPLDSAHTLLAPPDSSEKICTVQLVGNSWTPGYPETQEALCPQVTWSW :::::::::::::::::::::::::::::::::::::::::::::::::::::::::::: CCDS75 MEALTPPPATHLSPLDSAHTLLAPPDSSEKICTVQLVGNSWTPGYPETQEALCPQVTWSW 60 70 80 90 100 110 310 320 330 340 350 360 pF1KE1 DQLPSRALGPAAAPTLSPESPAGSPAMMLQPGPQLYDVMDAVPARRWKEFVRTLGLREAE :::::::::::::::::::::::::::::::::::::::::::::::::::::::::::: CCDS75 DQLPSRALGPAAAPTLSPESPAGSPAMMLQPGPQLYDVMDAVPARRWKEFVRTLGLREAE 120 130 140 150 160 170 370 380 390 400 410 pF1KE1 IEAVEVEIGRFRDQQYEMLKRWRQQQPAGLGAVYAALERMGLDGCVEDLRSRLQRGP ::::::::::::::::::::::::::::::::::::::::::::::::::::::::: CCDS75 IEAVEVEIGRFRDQQYEMLKRWRQQQPAGLGAVYAALERMGLDGCVEDLRSRLQRGP 180 190 200 210 220 230 417 residues in 1 query sequences 18511270 residues in 32554 library sequences Tcomplib [36.3.4 Apr, 2011] (8 proc) start: Sun Nov 6 19:32:59 2016 done: Sun Nov 6 19:32:59 2016 Total Scan time: 3.400 Total Display time: 0.020 Function used was FASTA [36.3.4 Apr, 2011]