FASTA searches a protein or DNA sequence data bank 36.3.4 Apr, 2011 Please cite: W.R. Pearson & D.J. Lipman PNAS (1988) 85:2444-2448 Query: pF1KE6222, 230 aa 1>>>pF1KE6222 230 - 230 aa - 230 aa Library: /omim/omim.rfq.tfa 60827320 residues in 85289 sequences Statistics: Expectation_n fit: rho(ln(x))= 5.1817+/-0.000367; mu= 14.0785+/- 0.022 mean_var=58.2499+/-12.237, 0's: 0 Z-trim(112.5): 19 B-trim: 37 in 1/51 Lambda= 0.168045 statistics sampled from 21506 (21508) to 21506 sequences Algorithm: FASTA (3.7 Nov 2010) [optimized] Parameters: BL50 matrix (15:-5), open/ext: -10/-2 ktup: 2, E-join: 1 (0.62), E-opt: 0.2 (0.252), width: 16 Scan time: 5.850 The best scores are: opt bits E(85289) NP_006570 (OMIM: 300205,300960,302960) 3-beta-hydr ( 230) 1611 398.8 3.9e-111 >>NP_006570 (OMIM: 300205,300960,302960) 3-beta-hydroxys (230 aa) initn: 1611 init1: 1611 opt: 1611 Z-score: 2116.2 bits: 398.8 E(85289): 3.9e-111 Smith-Waterman score: 1611; 100.0% identity (100.0% similar) in 230 aa overlap (1-230:1-230) 10 20 30 40 50 60 pF1KE6 MTTNAGPLHPYWPQHLRLDNFVPNDRPTWHILAGLFSVTGVLVVTTWLLSGRAAVVPLGT :::::::::::::::::::::::::::::::::::::::::::::::::::::::::::: NP_006 MTTNAGPLHPYWPQHLRLDNFVPNDRPTWHILAGLFSVTGVLVVTTWLLSGRAAVVPLGT 10 20 30 40 50 60 70 80 90 100 110 120 pF1KE6 WRRLSLCWFAVCGFIHLVIEGWFVLYYEDLLGDQAFLSQLWKEYAKGDSRYILGDNFTVC :::::::::::::::::::::::::::::::::::::::::::::::::::::::::::: NP_006 WRRLSLCWFAVCGFIHLVIEGWFVLYYEDLLGDQAFLSQLWKEYAKGDSRYILGDNFTVC 70 80 90 100 110 120 130 140 150 160 170 180 pF1KE6 METITACLWGPLSLWVVIAFLRQHPLRFILQLVVSVGQIYGDVLYFLTEHRDGFQHGELG :::::::::::::::::::::::::::::::::::::::::::::::::::::::::::: NP_006 METITACLWGPLSLWVVIAFLRQHPLRFILQLVVSVGQIYGDVLYFLTEHRDGFQHGELG 130 140 150 160 170 180 190 200 210 220 230 pF1KE6 HPLYFWFYFVFMNALWLVLPGVLVLDAVKHLTHAQSTLDAKATKAKSKKN :::::::::::::::::::::::::::::::::::::::::::::::::: NP_006 HPLYFWFYFVFMNALWLVLPGVLVLDAVKHLTHAQSTLDAKATKAKSKKN 190 200 210 220 230 230 residues in 1 query sequences 60827320 residues in 85289 library sequences Tcomplib [36.3.4 Apr, 2011] (8 proc) start: Tue Nov 8 11:13:20 2016 done: Tue Nov 8 11:13:20 2016 Total Scan time: 5.850 Total Display time: -0.040 Function used was FASTA [36.3.4 Apr, 2011]