FASTA searches a protein or DNA sequence data bank 36.3.4 Apr, 2011
Please cite:
W.R. Pearson & D.J. Lipman PNAS (1988) 85:2444-2448

Query: pF1KE6222, 230 aa
  1>>>pF1KE6222 230 - 230 aa - 230 aa
Library: human.CCDS.faa
  18511270 residues in 32554 sequences

Statistics:  Expectation_n fit: rho(ln(x))= 5.2081+/-0.000871; mu= 14.1794+/- 0.052
 mean_var=59.6139+/-12.399, 0's: 0 Z-trim(105.8): 15  B-trim: 0 in 0/50
 Lambda= 0.166112
 statistics sampled from 8597 (8602) to 8597 sequences
Algorithm: FASTA (3.7 Nov 2010) [optimized]
Parameters: BL50 matrix (15:-5), open/ext: -10/-2
 ktup: 2, E-join: 1 (0.64), E-opt: 0.2 (0.264), width:  16
 Scan time:  1.300

The best scores are:                                      opt bits E(32554)
CCDS14300.1 EBP gene_id:10682|Hs108|chrX           ( 230) 1611 394.3 3.4e-110
CCDS9420.1 EBPL gene_id:84650|Hs108|chr13          ( 206)  297 79.4 1.9e-15


>>CCDS14300.1 EBP gene_id:10682|Hs108|chrX                (230 aa)
 initn: 1611 init1: 1611 opt: 1611  Z-score: 2091.8  bits: 394.3 E(32554): 3.4e-110
Smith-Waterman score: 1611; 100.0% identity (100.0% similar) in 230 aa overlap (1-230:1-230)

               10        20        30        40        50        60
pF1KE6 MTTNAGPLHPYWPQHLRLDNFVPNDRPTWHILAGLFSVTGVLVVTTWLLSGRAAVVPLGT
       ::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
CCDS14 MTTNAGPLHPYWPQHLRLDNFVPNDRPTWHILAGLFSVTGVLVVTTWLLSGRAAVVPLGT
               10        20        30        40        50        60

               70        80        90       100       110       120
pF1KE6 WRRLSLCWFAVCGFIHLVIEGWFVLYYEDLLGDQAFLSQLWKEYAKGDSRYILGDNFTVC
       ::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
CCDS14 WRRLSLCWFAVCGFIHLVIEGWFVLYYEDLLGDQAFLSQLWKEYAKGDSRYILGDNFTVC
               70        80        90       100       110       120

              130       140       150       160       170       180
pF1KE6 METITACLWGPLSLWVVIAFLRQHPLRFILQLVVSVGQIYGDVLYFLTEHRDGFQHGELG
       ::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
CCDS14 METITACLWGPLSLWVVIAFLRQHPLRFILQLVVSVGQIYGDVLYFLTEHRDGFQHGELG
              130       140       150       160       170       180

              190       200       210       220       230
pF1KE6 HPLYFWFYFVFMNALWLVLPGVLVLDAVKHLTHAQSTLDAKATKAKSKKN
       ::::::::::::::::::::::::::::::::::::::::::::::::::
CCDS14 HPLYFWFYFVFMNALWLVLPGVLVLDAVKHLTHAQSTLDAKATKAKSKKN
              190       200       210       220       230

>>CCDS9420.1 EBPL gene_id:84650|Hs108|chr13               (206 aa)
 initn: 267 init1: 240 opt: 297  Z-score: 390.7  bits: 79.4 E(32554): 1.9e-15
Smith-Waterman score: 297; 31.4% identity (66.9% similar) in 169 aa overlap (59-221:37-203)

       30        40        50        60        70        80        
pF1KE6 WHILAGLFSVTGVLVVTTWLLSGRAAVVPLGTWRRLSLCWFAVCGFIHLVIEGWFVLYYE
                                     :.  : .: :.   ...:...:: ::  : 
CCDS94 LGAEAGGSLLLCAALLAAGCALGLRLGRGQGAADRGALIWLCYDALVHFALEGPFV--YL
         10        20        30        40        50        60      

       90           100       110       120       130       140    
pF1KE6 DLLGDQA----FLSQLWKEYAKGDSRYILGDNFTVCMETITACLWGPLSLWVVIAFLRQH
       .:.:. :    ....:::::.:.:.:..  :   : .: .:. : : :.:... :.....
CCDS94 SLVGNVANSDGLIASLWKEYGKADARWVYFDPTIVSVEILTVALDGSLALFLIYAIVKEK
           70        80        90       100       110       120    

          150       160       170       180       190       200    
pF1KE6 PLRFILQLVVSVGQIYGDVLYFLTEHRDGFQHGELGHPLYFWFYFVFMNALWLVLPGVLV
         : .::... : ..::  . :: :      . . .. :: :.:. :.:..:...::.:.
CCDS94 YYRHFLQITLCVCELYGCWMTFLPEWLTRSPNLNTSNWLYCWLYLFFFNGVWVLIPGLLL
          130       140       150       160       170       180    

          210         220       230
pF1KE6 LDAVKHLT--HAQSTLDAKATKAKSKKN
        ..  .:   : . : ..:         
CCDS94 WQSWLELKKMHQKETSSVKKFQ      
          190       200            




230 residues in 1 query   sequences
18511270 residues in 32554 library sequences
 Tcomplib [36.3.4 Apr, 2011] (8 proc)
 start: Tue Nov  8 11:13:19 2016 done: Tue Nov  8 11:13:19 2016
 Total Scan time:  1.300 Total Display time: -0.030

Function used was FASTA [36.3.4 Apr, 2011]