FASTA searches a protein or DNA sequence data bank 36.3.4 Apr, 2011 Please cite: W.R. Pearson & D.J. Lipman PNAS (1988) 85:2444-2448 Query: pF1KB8968, 357 aa 1>>>pF1KB8968 357 - 357 aa - 357 aa Library: human.CCDS.faa 18511270 residues in 32554 sequences Statistics: Expectation_n fit: rho(ln(x))= 10.4114+/-0.000914; mu= -3.2746+/- 0.056 mean_var=358.2231+/-72.469, 0's: 0 Z-trim(117.4): 130 B-trim: 0 in 0/53 Lambda= 0.067764 statistics sampled from 17979 (18113) to 17979 sequences Algorithm: FASTA (3.7 Nov 2010) [optimized] Parameters: BL50 matrix (15:-5), open/ext: -10/-2 ktup: 2, E-join: 1 (0.815), E-opt: 0.2 (0.556), width: 16 Scan time: 3.430 The best scores are: opt bits E(32554) CCDS41575.1 HMX3 gene_id:340784|Hs108|chr10 ( 357) 2403 247.9 9.8e-66 CCDS47018.1 HMX1 gene_id:3166|Hs108|chr4 ( 348) 558 67.5 1.9e-11 >>CCDS41575.1 HMX3 gene_id:340784|Hs108|chr10 (357 aa) initn: 2403 init1: 2403 opt: 2403 Z-score: 1293.6 bits: 247.9 E(32554): 9.8e-66 Smith-Waterman score: 2403; 100.0% identity (100.0% similar) in 357 aa overlap (1-357:1-357) 10 20 30 40 50 60 pF1KB8 MPEPGPDAAGTASAQPQPPPPPPPAPKESPFSIKNLLNGDHHRPPPKPQPPPRTLFAPAS :::::::::::::::::::::::::::::::::::::::::::::::::::::::::::: CCDS41 MPEPGPDAAGTASAQPQPPPPPPPAPKESPFSIKNLLNGDHHRPPPKPQPPPRTLFAPAS 10 20 30 40 50 60 70 80 90 100 110 120 pF1KB8 AAAAAAAAAAAAAKGALEGAAGFALSQVGDLAFPRFEIPAQRFALPAHYLERSPAWWYPY :::::::::::::::::::::::::::::::::::::::::::::::::::::::::::: CCDS41 AAAAAAAAAAAAAKGALEGAAGFALSQVGDLAFPRFEIPAQRFALPAHYLERSPAWWYPY 70 80 90 100 110 120 130 140 150 160 170 180 pF1KB8 TLTPAGGHLPRPEASEKALLRDSSPASGTDRDSPEPLLKADPDHKELDSKSPDEIILEES :::::::::::::::::::::::::::::::::::::::::::::::::::::::::::: CCDS41 TLTPAGGHLPRPEASEKALLRDSSPASGTDRDSPEPLLKADPDHKELDSKSPDEIILEES 130 140 150 160 170 180 190 200 210 220 230 240 pF1KB8 DSEESKKEGEAAPGAAGASVGAAAATPGAEDWKKGAESPEKKPACRKKKTRTVFSRSQVF :::::::::::::::::::::::::::::::::::::::::::::::::::::::::::: CCDS41 DSEESKKEGEAAPGAAGASVGAAAATPGAEDWKKGAESPEKKPACRKKKTRTVFSRSQVF 190 200 210 220 230 240 250 260 270 280 290 300 pF1KB8 QLESTFDMKRYLSSSERAGLAASLHLTETQVKIWFQNRRNKWKRQLAAELEAANLSHAAA :::::::::::::::::::::::::::::::::::::::::::::::::::::::::::: CCDS41 QLESTFDMKRYLSSSERAGLAASLHLTETQVKIWFQNRRNKWKRQLAAELEAANLSHAAA 250 260 270 280 290 300 310 320 330 340 350 pF1KB8 QRIVRVPILYHENSAAEGAAAAAAGAPVPVSQPLLTFPHPVYYSHPVVSSVPLLRPV ::::::::::::::::::::::::::::::::::::::::::::::::::::::::: CCDS41 QRIVRVPILYHENSAAEGAAAAAAGAPVPVSQPLLTFPHPVYYSHPVVSSVPLLRPV 310 320 330 340 350 >>CCDS47018.1 HMX1 gene_id:3166|Hs108|chr4 (348 aa) initn: 612 init1: 535 opt: 558 Z-score: 318.9 bits: 67.5 E(32554): 1.9e-11 Smith-Waterman score: 609; 47.4% identity (62.9% similar) in 251 aa overlap (115-355:114-341) 90 100 110 120 130 140 pF1KB8 LSQVGDLAFPRFEIPAQRFALPAHYLERSPAWWYPYTLTPAGGHLPRPEASEKALLRDSS : ::: . :: : :..:. ::: CCDS47 RALLGPGALGLGPRPPPGPGPPFALGCGGAARWYPRAHGGYGGGLS-PDTSD----RDS- 90 100 110 120 130 150 160 170 180 190 200 pF1KB8 PASGTDRDSPEPLLKADPDHKELDSKSPDEIILEESDSEESKKEGEAAPGAAGASVGAAA : .: . : : .. .. . . . : .: .:.::: . :... CCDS47 PETGEEMGRAEGAWPRGPGPGAVQREAAELAARGPAAGTEEASELAEVPAAAGETRGGVG 140 150 160 170 180 190 210 220 230 240 250 260 pF1KB8 ATPGAEDWKKGAESPEKKPACRKKKTRTVFSRSQVFQLESTFDMKRYLSSSERAGLAASL . : ::::::::::::::::::::::.::::::.::::::::: CCDS47 VGGG-----------------RKKKTRTVFSRSQVFQLESTFDLKRYLSSAERAGLAASL 200 210 220 230 240 270 280 290 300 310 320 pF1KB8 HLTETQVKIWFQNRRNKWKRQLAAELEAANLSHAAAQRIVRVPILYHENSAAEGAAAAAA .::::::::::::::::::::::::::::.:: .:::.::::.::::. : .::. : CCDS47 QLTETQVKIWFQNRRNKWKRQLAAELEAASLSPPGAQRLVRVPVLYHESPPAAAAAGPPA 250 260 270 280 290 300 330 340 350 pF1KB8 GAPVPVSQ-------PLLTFPHPVYY---SHPVVSSVPLLRPV : :.. ::: : . : . :...:::.:: CCDS47 TLPFPLAPAAPAPPPPLLGFSGALAYPLAAFPAAASVPFLRAQMPGLV 310 320 330 340 357 residues in 1 query sequences 18511270 residues in 32554 library sequences Tcomplib [36.3.4 Apr, 2011] (8 proc) start: Tue Nov 8 04:24:35 2016 done: Tue Nov 8 04:24:36 2016 Total Scan time: 3.430 Total Display time: -0.030 Function used was FASTA [36.3.4 Apr, 2011]