FASTA searches a protein or DNA sequence data bank 36.3.4 Apr, 2011 Please cite: W.R. Pearson & D.J. Lipman PNAS (1988) 85:2444-2448 Query: pF1KE5653, 506 aa 1>>>pF1KE5653 506 - 506 aa - 506 aa Library: /omim/omim.rfq.tfa 60827320 residues in 85289 sequences Statistics: Expectation_n fit: rho(ln(x))= 4.9650+/-0.000398; mu= 21.8260+/- 0.025 mean_var=101.4340+/-21.524, 0's: 0 Z-trim(113.1): 116 B-trim: 967 in 1/56 Lambda= 0.127345 statistics sampled from 22215 (22340) to 22215 sequences Algorithm: FASTA (3.7 Nov 2010) [optimized] Parameters: BL50 matrix (15:-5), open/ext: -10/-2 ktup: 2, E-join: 1 (0.633), E-opt: 0.2 (0.262), width: 16 Scan time: 8.430 The best scores are: opt bits E(85289) NP_061323 (OMIM: 615231) roquin-2 isoform 2 [Homo (1064) 2943 552.1 2.9e-156 NP_001094058 (OMIM: 615231) roquin-2 isoform 1 [Ho (1191) 2943 552.2 3.1e-156 XP_011507533 (OMIM: 609424) PREDICTED: roquin-1 is (1076) 2512 472.9 2e-132 XP_005244978 (OMIM: 609424) PREDICTED: roquin-1 is (1113) 2512 473.0 2e-132 NP_001287781 (OMIM: 609424) roquin-1 isoform d [Ho (1124) 2512 473.0 2e-132 NP_001287780 (OMIM: 609424) roquin-1 isoform c [Ho (1125) 2512 473.0 2e-132 NP_742068 (OMIM: 609424) roquin-1 isoform b [Homo (1133) 2512 473.0 2e-132 NP_001287779 (OMIM: 609424) roquin-1 isoform a [Ho (1134) 2512 473.0 2e-132 >>NP_061323 (OMIM: 615231) roquin-2 isoform 2 [Homo sapi (1064 aa) initn: 2943 init1: 2943 opt: 2943 Z-score: 2926.5 bits: 552.1 E(85289): 2.9e-156 Smith-Waterman score: 2943; 100.0% identity (100.0% similar) in 442 aa overlap (1-442:1-442) 10 20 30 40 50 60 pF1KE5 MPVQAAQWTEFLSCPICYNEFDENVHKPISLGCSHTVCKTCLNKLHRKACPFDQTAINTD :::::::::::::::::::::::::::::::::::::::::::::::::::::::::::: NP_061 MPVQAAQWTEFLSCPICYNEFDENVHKPISLGCSHTVCKTCLNKLHRKACPFDQTAINTD 10 20 30 40 50 60 70 80 90 100 110 120 pF1KE5 IDVLPVNFALLQLVGAQVPDHQSIKLSNLGENKHYEVAKKCVEDLALYLKPLSGGKGVAS :::::::::::::::::::::::::::::::::::::::::::::::::::::::::::: NP_061 IDVLPVNFALLQLVGAQVPDHQSIKLSNLGENKHYEVAKKCVEDLALYLKPLSGGKGVAS 70 80 90 100 110 120 130 140 150 160 170 180 pF1KE5 LNQSALSRPMQRKLVTLVNCQLVEEEGRVRAMRAARSLGERTVTELILQHQNPQQLSANL :::::::::::::::::::::::::::::::::::::::::::::::::::::::::::: NP_061 LNQSALSRPMQRKLVTLVNCQLVEEEGRVRAMRAARSLGERTVTELILQHQNPQQLSANL 130 140 150 160 170 180 190 200 210 220 230 240 pF1KE5 WAAVRARGCQFLGPAMQEEALKLVLLALEDGSALSRKVLVLFVVQRLEPRFPQASKTSIG :::::::::::::::::::::::::::::::::::::::::::::::::::::::::::: NP_061 WAAVRARGCQFLGPAMQEEALKLVLLALEDGSALSRKVLVLFVVQRLEPRFPQASKTSIG 190 200 210 220 230 240 250 260 270 280 290 300 pF1KE5 HVVQLLYRASCFKVTKRDEDSSLMQLKEEFRSYEALRREHDAQIVHIAMEAGLRISPEQW :::::::::::::::::::::::::::::::::::::::::::::::::::::::::::: NP_061 HVVQLLYRASCFKVTKRDEDSSLMQLKEEFRSYEALRREHDAQIVHIAMEAGLRISPEQW 250 260 270 280 290 300 310 320 330 340 350 360 pF1KE5 SSLLYGDLAHKSHMQSIIDKLQSPESFAKSVQELTIVLQRTGDPANLNRLRPHLELLANI :::::::::::::::::::::::::::::::::::::::::::::::::::::::::::: NP_061 SSLLYGDLAHKSHMQSIIDKLQSPESFAKSVQELTIVLQRTGDPANLNRLRPHLELLANI 310 320 330 340 350 360 370 380 390 400 410 420 pF1KE5 DPNPDAVSPTWEQLENAMVAVKTVVHGLVDFIQNYSRKGHETPQPQPNSKYKTSMCRDLR :::::::::::::::::::::::::::::::::::::::::::::::::::::::::::: NP_061 DPNPDAVSPTWEQLENAMVAVKTVVHGLVDFIQNYSRKGHETPQPQPNSKYKTSMCRDLR 370 380 390 400 410 420 430 440 450 460 470 480 pF1KE5 QQGGCPRGTNCTFAHSQEELEKCNPRGLYLHCCLLSSVASLGTVHNELYKQQHCDREKIS :::::::::::::::::::::: NP_061 QQGGCPRGTNCTFAHSQEELEKYRLRNKKINATVRTFPLLNKVGVNNTVTTTAGNVISVI 430 440 450 460 470 480 >>NP_001094058 (OMIM: 615231) roquin-2 isoform 1 [Homo s (1191 aa) initn: 2943 init1: 2943 opt: 2943 Z-score: 2926.0 bits: 552.2 E(85289): 3.1e-156 Smith-Waterman score: 2943; 100.0% identity (100.0% similar) in 442 aa overlap (1-442:1-442) 10 20 30 40 50 60 pF1KE5 MPVQAAQWTEFLSCPICYNEFDENVHKPISLGCSHTVCKTCLNKLHRKACPFDQTAINTD :::::::::::::::::::::::::::::::::::::::::::::::::::::::::::: NP_001 MPVQAAQWTEFLSCPICYNEFDENVHKPISLGCSHTVCKTCLNKLHRKACPFDQTAINTD 10 20 30 40 50 60 70 80 90 100 110 120 pF1KE5 IDVLPVNFALLQLVGAQVPDHQSIKLSNLGENKHYEVAKKCVEDLALYLKPLSGGKGVAS :::::::::::::::::::::::::::::::::::::::::::::::::::::::::::: NP_001 IDVLPVNFALLQLVGAQVPDHQSIKLSNLGENKHYEVAKKCVEDLALYLKPLSGGKGVAS 70 80 90 100 110 120 130 140 150 160 170 180 pF1KE5 LNQSALSRPMQRKLVTLVNCQLVEEEGRVRAMRAARSLGERTVTELILQHQNPQQLSANL :::::::::::::::::::::::::::::::::::::::::::::::::::::::::::: NP_001 LNQSALSRPMQRKLVTLVNCQLVEEEGRVRAMRAARSLGERTVTELILQHQNPQQLSANL 130 140 150 160 170 180 190 200 210 220 230 240 pF1KE5 WAAVRARGCQFLGPAMQEEALKLVLLALEDGSALSRKVLVLFVVQRLEPRFPQASKTSIG :::::::::::::::::::::::::::::::::::::::::::::::::::::::::::: NP_001 WAAVRARGCQFLGPAMQEEALKLVLLALEDGSALSRKVLVLFVVQRLEPRFPQASKTSIG 190 200 210 220 230 240 250 260 270 280 290 300 pF1KE5 HVVQLLYRASCFKVTKRDEDSSLMQLKEEFRSYEALRREHDAQIVHIAMEAGLRISPEQW :::::::::::::::::::::::::::::::::::::::::::::::::::::::::::: NP_001 HVVQLLYRASCFKVTKRDEDSSLMQLKEEFRSYEALRREHDAQIVHIAMEAGLRISPEQW 250 260 270 280 290 300 310 320 330 340 350 360 pF1KE5 SSLLYGDLAHKSHMQSIIDKLQSPESFAKSVQELTIVLQRTGDPANLNRLRPHLELLANI :::::::::::::::::::::::::::::::::::::::::::::::::::::::::::: NP_001 SSLLYGDLAHKSHMQSIIDKLQSPESFAKSVQELTIVLQRTGDPANLNRLRPHLELLANI 310 320 330 340 350 360 370 380 390 400 410 420 pF1KE5 DPNPDAVSPTWEQLENAMVAVKTVVHGLVDFIQNYSRKGHETPQPQPNSKYKTSMCRDLR :::::::::::::::::::::::::::::::::::::::::::::::::::::::::::: NP_001 DPNPDAVSPTWEQLENAMVAVKTVVHGLVDFIQNYSRKGHETPQPQPNSKYKTSMCRDLR 370 380 390 400 410 420 430 440 450 460 470 480 pF1KE5 QQGGCPRGTNCTFAHSQEELEKCNPRGLYLHCCLLSSVASLGTVHNELYKQQHCDREKIS :::::::::::::::::::::: NP_001 QQGGCPRGTNCTFAHSQEELEKYRLRNKKINATVRTFPLLNKVGVNNTVTTTAGNVISVI 430 440 450 460 470 480 >>XP_011507533 (OMIM: 609424) PREDICTED: roquin-1 isofor (1076 aa) initn: 2393 init1: 1915 opt: 2512 Z-score: 2498.5 bits: 472.9 E(85289): 2e-132 Smith-Waterman score: 2512; 84.0% identity (94.8% similar) in 445 aa overlap (1-442:1-445) 10 20 30 40 50 60 pF1KE5 MPVQAAQWTEFLSCPICYNEFDENVHKPISLGCSHTVCKTCLNKLHRKACPFDQTAINTD ::::: :::.::::::: . :::...:::::::.::::: :::::::::::::::.:::: XP_011 MPVQAPQWTDFLSCPICTQTFDETIRKPISLGCGHTVCKMCLNKLHRKACPFDQTTINTD 10 20 30 40 50 60 70 80 90 100 110 pF1KE5 IDVLPVNFALLQLVGAQVPDHQSIKL-SNLGENKHYEVAKKCVEDLALYLKPLSGGKGVA :..:::: :::::::::::..: : : :.. ..:::: ::::::.:::::::::...::. XP_011 IELLPVNSALLQLVGAQVPEQQPITLCSGVEDTKHYEEAKKCVEELALYLKPLSSARGVG 70 80 90 100 110 120 120 130 140 150 160 170 pF1KE5 --SLNQSALSRPMQRKLVTLVNCQLVEEEGRVRAMRAARSLGERTVTELILQHQNPQQLS : .::.:::::::::::::.:::::::::.:::::::::::::::::::::::::::: XP_011 LNSTTQSVLSRPMQRKLVTLVHCQLVEEEGRIRAMRAARSLGERTVTELILQHQNPQQLS 130 140 150 160 170 180 180 190 200 210 220 230 pF1KE5 ANLWAAVRARGCQFLGPAMQEEALKLVLLALEDGSALSRKVLVLFVVQRLEPRFPQASKT .::::::::::::::::::::::::::::::::::::::::::::::::::::::::::: XP_011 SNLWAAVRARGCQFLGPAMQEEALKLVLLALEDGSALSRKVLVLFVVQRLEPRFPQASKT 190 200 210 220 230 240 240 250 260 270 280 290 pF1KE5 SIGHVVQLLYRASCFKVTKRDEDSSLMQLKEEFRSYEALRREHDAQIVHIAMEAGLRISP ::::::::::::::::::::::::::::::::::.:::::::::.:::.:::::::::.: XP_011 SIGHVVQLLYRASCFKVTKRDEDSSLMQLKEEFRTYEALRREHDSQIVQIAMEAGLRIAP 250 260 270 280 290 300 300 310 320 330 340 350 pF1KE5 EQWSSLLYGDLAHKSHMQSIIDKLQSPESFAKSVQELTIVLQRTGDPANLNRLRPHLELL .::::::::: .:::::::::::::.: :::.:::::::.:::::::::::::::::::: XP_011 DQWSSLLYGDQSHKSHMQSIIDKLQTPASFAQSVQELTIALQRTGDPANLNRLRPHLELL 310 320 330 340 350 360 360 370 380 390 400 410 pF1KE5 ANIDPNPDAVSPTWEQLENAMVAVKTVVHGLVDFIQNYSRKGHETPQPQPNSKYKTSMCR :::::.::: ::::::::..:::.::::::::.:::.:.:: . :: .::::: ::: XP_011 ANIDPSPDAPPPTWEQLENGLVAVRTVVHGLVDYIQNHSKKGADQQQPPQHSKYKTYMCR 370 380 390 400 410 420 420 430 440 450 460 470 pF1KE5 DLRQQGGCPRGTNCTFAHSQEELEKCNPRGLYLHCCLLSSVASLGTVHNELYKQQHCDRE :..:.::::::..:::::::::::: XP_011 DMKQRGGCPRGASCTFAHSQEELEKFRKMNKRLVPRRPLSASLGQLNEVGLPSAAILPDE 430 440 450 460 470 480 >>XP_005244978 (OMIM: 609424) PREDICTED: roquin-1 isofor (1113 aa) initn: 2393 init1: 1915 opt: 2512 Z-score: 2498.4 bits: 473.0 E(85289): 2e-132 Smith-Waterman score: 2512; 84.0% identity (94.8% similar) in 445 aa overlap (1-442:1-445) 10 20 30 40 50 60 pF1KE5 MPVQAAQWTEFLSCPICYNEFDENVHKPISLGCSHTVCKTCLNKLHRKACPFDQTAINTD ::::: :::.::::::: . :::...:::::::.::::: :::::::::::::::.:::: XP_005 MPVQAPQWTDFLSCPICTQTFDETIRKPISLGCGHTVCKMCLNKLHRKACPFDQTTINTD 10 20 30 40 50 60 70 80 90 100 110 pF1KE5 IDVLPVNFALLQLVGAQVPDHQSIKL-SNLGENKHYEVAKKCVEDLALYLKPLSGGKGVA :..:::: :::::::::::..: : : :.. ..:::: ::::::.:::::::::...::. XP_005 IELLPVNSALLQLVGAQVPEQQPITLCSGVEDTKHYEEAKKCVEELALYLKPLSSARGVG 70 80 90 100 110 120 120 130 140 150 160 170 pF1KE5 --SLNQSALSRPMQRKLVTLVNCQLVEEEGRVRAMRAARSLGERTVTELILQHQNPQQLS : .::.:::::::::::::.:::::::::.:::::::::::::::::::::::::::: XP_005 LNSTTQSVLSRPMQRKLVTLVHCQLVEEEGRIRAMRAARSLGERTVTELILQHQNPQQLS 130 140 150 160 170 180 180 190 200 210 220 230 pF1KE5 ANLWAAVRARGCQFLGPAMQEEALKLVLLALEDGSALSRKVLVLFVVQRLEPRFPQASKT .::::::::::::::::::::::::::::::::::::::::::::::::::::::::::: XP_005 SNLWAAVRARGCQFLGPAMQEEALKLVLLALEDGSALSRKVLVLFVVQRLEPRFPQASKT 190 200 210 220 230 240 240 250 260 270 280 290 pF1KE5 SIGHVVQLLYRASCFKVTKRDEDSSLMQLKEEFRSYEALRREHDAQIVHIAMEAGLRISP ::::::::::::::::::::::::::::::::::.:::::::::.:::.:::::::::.: XP_005 SIGHVVQLLYRASCFKVTKRDEDSSLMQLKEEFRTYEALRREHDSQIVQIAMEAGLRIAP 250 260 270 280 290 300 300 310 320 330 340 350 pF1KE5 EQWSSLLYGDLAHKSHMQSIIDKLQSPESFAKSVQELTIVLQRTGDPANLNRLRPHLELL .::::::::: .:::::::::::::.: :::.:::::::.:::::::::::::::::::: XP_005 DQWSSLLYGDQSHKSHMQSIIDKLQTPASFAQSVQELTIALQRTGDPANLNRLRPHLELL 310 320 330 340 350 360 360 370 380 390 400 410 pF1KE5 ANIDPNPDAVSPTWEQLENAMVAVKTVVHGLVDFIQNYSRKGHETPQPQPNSKYKTSMCR :::::.::: ::::::::..:::.::::::::.:::.:.:: . :: .::::: ::: XP_005 ANIDPSPDAPPPTWEQLENGLVAVRTVVHGLVDYIQNHSKKGADQQQPPQHSKYKTYMCR 370 380 390 400 410 420 420 430 440 450 460 470 pF1KE5 DLRQQGGCPRGTNCTFAHSQEELEKCNPRGLYLHCCLLSSVASLGTVHNELYKQQHCDRE :..:.::::::..:::::::::::: XP_005 DMKQRGGCPRGASCTFAHSQEELEKFRKMNKRLVPRRPLSASLGQLNEVGLPSAAILPDE 430 440 450 460 470 480 >>NP_001287781 (OMIM: 609424) roquin-1 isoform d [Homo s (1124 aa) initn: 2393 init1: 1915 opt: 2512 Z-score: 2498.3 bits: 473.0 E(85289): 2e-132 Smith-Waterman score: 2512; 84.0% identity (94.8% similar) in 445 aa overlap (1-442:1-445) 10 20 30 40 50 60 pF1KE5 MPVQAAQWTEFLSCPICYNEFDENVHKPISLGCSHTVCKTCLNKLHRKACPFDQTAINTD ::::: :::.::::::: . :::...:::::::.::::: :::::::::::::::.:::: NP_001 MPVQAPQWTDFLSCPICTQTFDETIRKPISLGCGHTVCKMCLNKLHRKACPFDQTTINTD 10 20 30 40 50 60 70 80 90 100 110 pF1KE5 IDVLPVNFALLQLVGAQVPDHQSIKL-SNLGENKHYEVAKKCVEDLALYLKPLSGGKGVA :..:::: :::::::::::..: : : :.. ..:::: ::::::.:::::::::...::. NP_001 IELLPVNSALLQLVGAQVPEQQPITLCSGVEDTKHYEEAKKCVEELALYLKPLSSARGVG 70 80 90 100 110 120 120 130 140 150 160 170 pF1KE5 --SLNQSALSRPMQRKLVTLVNCQLVEEEGRVRAMRAARSLGERTVTELILQHQNPQQLS : .::.:::::::::::::.:::::::::.:::::::::::::::::::::::::::: NP_001 LNSTTQSVLSRPMQRKLVTLVHCQLVEEEGRIRAMRAARSLGERTVTELILQHQNPQQLS 130 140 150 160 170 180 180 190 200 210 220 230 pF1KE5 ANLWAAVRARGCQFLGPAMQEEALKLVLLALEDGSALSRKVLVLFVVQRLEPRFPQASKT .::::::::::::::::::::::::::::::::::::::::::::::::::::::::::: NP_001 SNLWAAVRARGCQFLGPAMQEEALKLVLLALEDGSALSRKVLVLFVVQRLEPRFPQASKT 190 200 210 220 230 240 240 250 260 270 280 290 pF1KE5 SIGHVVQLLYRASCFKVTKRDEDSSLMQLKEEFRSYEALRREHDAQIVHIAMEAGLRISP ::::::::::::::::::::::::::::::::::.:::::::::.:::.:::::::::.: NP_001 SIGHVVQLLYRASCFKVTKRDEDSSLMQLKEEFRTYEALRREHDSQIVQIAMEAGLRIAP 250 260 270 280 290 300 300 310 320 330 340 350 pF1KE5 EQWSSLLYGDLAHKSHMQSIIDKLQSPESFAKSVQELTIVLQRTGDPANLNRLRPHLELL .::::::::: .:::::::::::::.: :::.:::::::.:::::::::::::::::::: NP_001 DQWSSLLYGDQSHKSHMQSIIDKLQTPASFAQSVQELTIALQRTGDPANLNRLRPHLELL 310 320 330 340 350 360 360 370 380 390 400 410 pF1KE5 ANIDPNPDAVSPTWEQLENAMVAVKTVVHGLVDFIQNYSRKGHETPQPQPNSKYKTSMCR :::::.::: ::::::::..:::.::::::::.:::.:.:: . :: .::::: ::: NP_001 ANIDPSPDAPPPTWEQLENGLVAVRTVVHGLVDYIQNHSKKGADQQQPPQHSKYKTYMCR 370 380 390 400 410 420 420 430 440 450 460 470 pF1KE5 DLRQQGGCPRGTNCTFAHSQEELEKCNPRGLYLHCCLLSSVASLGTVHNELYKQQHCDRE :..:.::::::..:::::::::::: NP_001 DMKQRGGCPRGASCTFAHSQEELEKFRKMNKRLVPRRPLSASLGQLNEVGLPSAAILPDE 430 440 450 460 470 480 >>NP_001287780 (OMIM: 609424) roquin-1 isoform c [Homo s (1125 aa) initn: 2393 init1: 1915 opt: 2512 Z-score: 2498.3 bits: 473.0 E(85289): 2e-132 Smith-Waterman score: 2512; 84.0% identity (94.8% similar) in 445 aa overlap (1-442:1-445) 10 20 30 40 50 60 pF1KE5 MPVQAAQWTEFLSCPICYNEFDENVHKPISLGCSHTVCKTCLNKLHRKACPFDQTAINTD ::::: :::.::::::: . :::...:::::::.::::: :::::::::::::::.:::: NP_001 MPVQAPQWTDFLSCPICTQTFDETIRKPISLGCGHTVCKMCLNKLHRKACPFDQTTINTD 10 20 30 40 50 60 70 80 90 100 110 pF1KE5 IDVLPVNFALLQLVGAQVPDHQSIKL-SNLGENKHYEVAKKCVEDLALYLKPLSGGKGVA :..:::: :::::::::::..: : : :.. ..:::: ::::::.:::::::::...::. NP_001 IELLPVNSALLQLVGAQVPEQQPITLCSGVEDTKHYEEAKKCVEELALYLKPLSSARGVG 70 80 90 100 110 120 120 130 140 150 160 170 pF1KE5 --SLNQSALSRPMQRKLVTLVNCQLVEEEGRVRAMRAARSLGERTVTELILQHQNPQQLS : .::.:::::::::::::.:::::::::.:::::::::::::::::::::::::::: NP_001 LNSTTQSVLSRPMQRKLVTLVHCQLVEEEGRIRAMRAARSLGERTVTELILQHQNPQQLS 130 140 150 160 170 180 180 190 200 210 220 230 pF1KE5 ANLWAAVRARGCQFLGPAMQEEALKLVLLALEDGSALSRKVLVLFVVQRLEPRFPQASKT .::::::::::::::::::::::::::::::::::::::::::::::::::::::::::: NP_001 SNLWAAVRARGCQFLGPAMQEEALKLVLLALEDGSALSRKVLVLFVVQRLEPRFPQASKT 190 200 210 220 230 240 240 250 260 270 280 290 pF1KE5 SIGHVVQLLYRASCFKVTKRDEDSSLMQLKEEFRSYEALRREHDAQIVHIAMEAGLRISP ::::::::::::::::::::::::::::::::::.:::::::::.:::.:::::::::.: NP_001 SIGHVVQLLYRASCFKVTKRDEDSSLMQLKEEFRTYEALRREHDSQIVQIAMEAGLRIAP 250 260 270 280 290 300 300 310 320 330 340 350 pF1KE5 EQWSSLLYGDLAHKSHMQSIIDKLQSPESFAKSVQELTIVLQRTGDPANLNRLRPHLELL .::::::::: .:::::::::::::.: :::.:::::::.:::::::::::::::::::: NP_001 DQWSSLLYGDQSHKSHMQSIIDKLQTPASFAQSVQELTIALQRTGDPANLNRLRPHLELL 310 320 330 340 350 360 360 370 380 390 400 410 pF1KE5 ANIDPNPDAVSPTWEQLENAMVAVKTVVHGLVDFIQNYSRKGHETPQPQPNSKYKTSMCR :::::.::: ::::::::..:::.::::::::.:::.:.:: . :: .::::: ::: NP_001 ANIDPSPDAPPPTWEQLENGLVAVRTVVHGLVDYIQNHSKKGADQQQPPQHSKYKTYMCR 370 380 390 400 410 420 420 430 440 450 460 470 pF1KE5 DLRQQGGCPRGTNCTFAHSQEELEKCNPRGLYLHCCLLSSVASLGTVHNELYKQQHCDRE :..:.::::::..:::::::::::: NP_001 DMKQRGGCPRGASCTFAHSQEELEKFRKMNKRLVPRRPLSASLGQLNEVGLPSAAILPDE 430 440 450 460 470 480 >>NP_742068 (OMIM: 609424) roquin-1 isoform b [Homo sapi (1133 aa) initn: 2393 init1: 1915 opt: 2512 Z-score: 2498.3 bits: 473.0 E(85289): 2e-132 Smith-Waterman score: 2512; 84.0% identity (94.8% similar) in 445 aa overlap (1-442:1-445) 10 20 30 40 50 60 pF1KE5 MPVQAAQWTEFLSCPICYNEFDENVHKPISLGCSHTVCKTCLNKLHRKACPFDQTAINTD ::::: :::.::::::: . :::...:::::::.::::: :::::::::::::::.:::: NP_742 MPVQAPQWTDFLSCPICTQTFDETIRKPISLGCGHTVCKMCLNKLHRKACPFDQTTINTD 10 20 30 40 50 60 70 80 90 100 110 pF1KE5 IDVLPVNFALLQLVGAQVPDHQSIKL-SNLGENKHYEVAKKCVEDLALYLKPLSGGKGVA :..:::: :::::::::::..: : : :.. ..:::: ::::::.:::::::::...::. NP_742 IELLPVNSALLQLVGAQVPEQQPITLCSGVEDTKHYEEAKKCVEELALYLKPLSSARGVG 70 80 90 100 110 120 120 130 140 150 160 170 pF1KE5 --SLNQSALSRPMQRKLVTLVNCQLVEEEGRVRAMRAARSLGERTVTELILQHQNPQQLS : .::.:::::::::::::.:::::::::.:::::::::::::::::::::::::::: NP_742 LNSTTQSVLSRPMQRKLVTLVHCQLVEEEGRIRAMRAARSLGERTVTELILQHQNPQQLS 130 140 150 160 170 180 180 190 200 210 220 230 pF1KE5 ANLWAAVRARGCQFLGPAMQEEALKLVLLALEDGSALSRKVLVLFVVQRLEPRFPQASKT .::::::::::::::::::::::::::::::::::::::::::::::::::::::::::: NP_742 SNLWAAVRARGCQFLGPAMQEEALKLVLLALEDGSALSRKVLVLFVVQRLEPRFPQASKT 190 200 210 220 230 240 240 250 260 270 280 290 pF1KE5 SIGHVVQLLYRASCFKVTKRDEDSSLMQLKEEFRSYEALRREHDAQIVHIAMEAGLRISP ::::::::::::::::::::::::::::::::::.:::::::::.:::.:::::::::.: NP_742 SIGHVVQLLYRASCFKVTKRDEDSSLMQLKEEFRTYEALRREHDSQIVQIAMEAGLRIAP 250 260 270 280 290 300 300 310 320 330 340 350 pF1KE5 EQWSSLLYGDLAHKSHMQSIIDKLQSPESFAKSVQELTIVLQRTGDPANLNRLRPHLELL .::::::::: .:::::::::::::.: :::.:::::::.:::::::::::::::::::: NP_742 DQWSSLLYGDQSHKSHMQSIIDKLQTPASFAQSVQELTIALQRTGDPANLNRLRPHLELL 310 320 330 340 350 360 360 370 380 390 400 410 pF1KE5 ANIDPNPDAVSPTWEQLENAMVAVKTVVHGLVDFIQNYSRKGHETPQPQPNSKYKTSMCR :::::.::: ::::::::..:::.::::::::.:::.:.:: . :: .::::: ::: NP_742 ANIDPSPDAPPPTWEQLENGLVAVRTVVHGLVDYIQNHSKKGADQQQPPQHSKYKTYMCR 370 380 390 400 410 420 420 430 440 450 460 470 pF1KE5 DLRQQGGCPRGTNCTFAHSQEELEKCNPRGLYLHCCLLSSVASLGTVHNELYKQQHCDRE :..:.::::::..:::::::::::: NP_742 DMKQRGGCPRGASCTFAHSQEELEKFRKMNKRLVPRRPLSASLGQLNEVGLPSAAILPDE 430 440 450 460 470 480 >>NP_001287779 (OMIM: 609424) roquin-1 isoform a [Homo s (1134 aa) initn: 2393 init1: 1915 opt: 2512 Z-score: 2498.3 bits: 473.0 E(85289): 2e-132 Smith-Waterman score: 2512; 84.0% identity (94.8% similar) in 445 aa overlap (1-442:1-445) 10 20 30 40 50 60 pF1KE5 MPVQAAQWTEFLSCPICYNEFDENVHKPISLGCSHTVCKTCLNKLHRKACPFDQTAINTD ::::: :::.::::::: . :::...:::::::.::::: :::::::::::::::.:::: NP_001 MPVQAPQWTDFLSCPICTQTFDETIRKPISLGCGHTVCKMCLNKLHRKACPFDQTTINTD 10 20 30 40 50 60 70 80 90 100 110 pF1KE5 IDVLPVNFALLQLVGAQVPDHQSIKL-SNLGENKHYEVAKKCVEDLALYLKPLSGGKGVA :..:::: :::::::::::..: : : :.. ..:::: ::::::.:::::::::...::. NP_001 IELLPVNSALLQLVGAQVPEQQPITLCSGVEDTKHYEEAKKCVEELALYLKPLSSARGVG 70 80 90 100 110 120 120 130 140 150 160 170 pF1KE5 --SLNQSALSRPMQRKLVTLVNCQLVEEEGRVRAMRAARSLGERTVTELILQHQNPQQLS : .::.:::::::::::::.:::::::::.:::::::::::::::::::::::::::: NP_001 LNSTTQSVLSRPMQRKLVTLVHCQLVEEEGRIRAMRAARSLGERTVTELILQHQNPQQLS 130 140 150 160 170 180 180 190 200 210 220 230 pF1KE5 ANLWAAVRARGCQFLGPAMQEEALKLVLLALEDGSALSRKVLVLFVVQRLEPRFPQASKT .::::::::::::::::::::::::::::::::::::::::::::::::::::::::::: NP_001 SNLWAAVRARGCQFLGPAMQEEALKLVLLALEDGSALSRKVLVLFVVQRLEPRFPQASKT 190 200 210 220 230 240 240 250 260 270 280 290 pF1KE5 SIGHVVQLLYRASCFKVTKRDEDSSLMQLKEEFRSYEALRREHDAQIVHIAMEAGLRISP ::::::::::::::::::::::::::::::::::.:::::::::.:::.:::::::::.: NP_001 SIGHVVQLLYRASCFKVTKRDEDSSLMQLKEEFRTYEALRREHDSQIVQIAMEAGLRIAP 250 260 270 280 290 300 300 310 320 330 340 350 pF1KE5 EQWSSLLYGDLAHKSHMQSIIDKLQSPESFAKSVQELTIVLQRTGDPANLNRLRPHLELL .::::::::: .:::::::::::::.: :::.:::::::.:::::::::::::::::::: NP_001 DQWSSLLYGDQSHKSHMQSIIDKLQTPASFAQSVQELTIALQRTGDPANLNRLRPHLELL 310 320 330 340 350 360 360 370 380 390 400 410 pF1KE5 ANIDPNPDAVSPTWEQLENAMVAVKTVVHGLVDFIQNYSRKGHETPQPQPNSKYKTSMCR :::::.::: ::::::::..:::.::::::::.:::.:.:: . :: .::::: ::: NP_001 ANIDPSPDAPPPTWEQLENGLVAVRTVVHGLVDYIQNHSKKGADQQQPPQHSKYKTYMCR 370 380 390 400 410 420 420 430 440 450 460 470 pF1KE5 DLRQQGGCPRGTNCTFAHSQEELEKCNPRGLYLHCCLLSSVASLGTVHNELYKQQHCDRE :..:.::::::..:::::::::::: NP_001 DMKQRGGCPRGASCTFAHSQEELEKFRKMNKRLVPRRPLSASLGQLNEVGLPSAAILPDE 430 440 450 460 470 480 506 residues in 1 query sequences 60827320 residues in 85289 library sequences Tcomplib [36.3.4 Apr, 2011] (8 proc) start: Tue Nov 8 04:07:59 2016 done: Tue Nov 8 04:08:00 2016 Total Scan time: 8.430 Total Display time: 0.080 Function used was FASTA [36.3.4 Apr, 2011]