FASTA searches a protein or DNA sequence data bank 36.3.4 Apr, 2011 Please cite: W.R. Pearson & D.J. Lipman PNAS (1988) 85:2444-2448 Query: pF1KE5653, 506 aa 1>>>pF1KE5653 506 - 506 aa - 506 aa Library: human.CCDS.faa 18511270 residues in 32554 sequences Statistics: Expectation_n fit: rho(ln(x))= 5.8773+/-0.000989; mu= 16.6085+/- 0.059 mean_var=104.6354+/-21.574, 0's: 0 Z-trim(106.2): 72 B-trim: 0 in 0/54 Lambda= 0.125382 statistics sampled from 8801 (8849) to 8801 sequences Algorithm: FASTA (3.7 Nov 2010) [optimized] Parameters: BL50 matrix (15:-5), open/ext: -10/-2 ktup: 2, E-join: 1 (0.646), E-opt: 0.2 (0.272), width: 16 Scan time: 3.120 The best scores are: opt bits E(32554) CCDS48014.1 RC3H2 gene_id:54542|Hs108|chr9 (1064) 2943 543.7 3.8e-154 CCDS43874.1 RC3H2 gene_id:54542|Hs108|chr9 (1191) 2943 543.7 4.1e-154 CCDS72987.1 RC3H1 gene_id:149041|Hs108|chr1 (1125) 2512 465.7 1.2e-130 CCDS30940.1 RC3H1 gene_id:149041|Hs108|chr1 (1133) 2512 465.8 1.2e-130 >>CCDS48014.1 RC3H2 gene_id:54542|Hs108|chr9 (1064 aa) initn: 2943 init1: 2943 opt: 2943 Z-score: 2880.9 bits: 543.7 E(32554): 3.8e-154 Smith-Waterman score: 2943; 100.0% identity (100.0% similar) in 442 aa overlap (1-442:1-442) 10 20 30 40 50 60 pF1KE5 MPVQAAQWTEFLSCPICYNEFDENVHKPISLGCSHTVCKTCLNKLHRKACPFDQTAINTD :::::::::::::::::::::::::::::::::::::::::::::::::::::::::::: CCDS48 MPVQAAQWTEFLSCPICYNEFDENVHKPISLGCSHTVCKTCLNKLHRKACPFDQTAINTD 10 20 30 40 50 60 70 80 90 100 110 120 pF1KE5 IDVLPVNFALLQLVGAQVPDHQSIKLSNLGENKHYEVAKKCVEDLALYLKPLSGGKGVAS :::::::::::::::::::::::::::::::::::::::::::::::::::::::::::: CCDS48 IDVLPVNFALLQLVGAQVPDHQSIKLSNLGENKHYEVAKKCVEDLALYLKPLSGGKGVAS 70 80 90 100 110 120 130 140 150 160 170 180 pF1KE5 LNQSALSRPMQRKLVTLVNCQLVEEEGRVRAMRAARSLGERTVTELILQHQNPQQLSANL :::::::::::::::::::::::::::::::::::::::::::::::::::::::::::: CCDS48 LNQSALSRPMQRKLVTLVNCQLVEEEGRVRAMRAARSLGERTVTELILQHQNPQQLSANL 130 140 150 160 170 180 190 200 210 220 230 240 pF1KE5 WAAVRARGCQFLGPAMQEEALKLVLLALEDGSALSRKVLVLFVVQRLEPRFPQASKTSIG :::::::::::::::::::::::::::::::::::::::::::::::::::::::::::: CCDS48 WAAVRARGCQFLGPAMQEEALKLVLLALEDGSALSRKVLVLFVVQRLEPRFPQASKTSIG 190 200 210 220 230 240 250 260 270 280 290 300 pF1KE5 HVVQLLYRASCFKVTKRDEDSSLMQLKEEFRSYEALRREHDAQIVHIAMEAGLRISPEQW :::::::::::::::::::::::::::::::::::::::::::::::::::::::::::: CCDS48 HVVQLLYRASCFKVTKRDEDSSLMQLKEEFRSYEALRREHDAQIVHIAMEAGLRISPEQW 250 260 270 280 290 300 310 320 330 340 350 360 pF1KE5 SSLLYGDLAHKSHMQSIIDKLQSPESFAKSVQELTIVLQRTGDPANLNRLRPHLELLANI :::::::::::::::::::::::::::::::::::::::::::::::::::::::::::: CCDS48 SSLLYGDLAHKSHMQSIIDKLQSPESFAKSVQELTIVLQRTGDPANLNRLRPHLELLANI 310 320 330 340 350 360 370 380 390 400 410 420 pF1KE5 DPNPDAVSPTWEQLENAMVAVKTVVHGLVDFIQNYSRKGHETPQPQPNSKYKTSMCRDLR :::::::::::::::::::::::::::::::::::::::::::::::::::::::::::: CCDS48 DPNPDAVSPTWEQLENAMVAVKTVVHGLVDFIQNYSRKGHETPQPQPNSKYKTSMCRDLR 370 380 390 400 410 420 430 440 450 460 470 480 pF1KE5 QQGGCPRGTNCTFAHSQEELEKCNPRGLYLHCCLLSSVASLGTVHNELYKQQHCDREKIS :::::::::::::::::::::: CCDS48 QQGGCPRGTNCTFAHSQEELEKYRLRNKKINATVRTFPLLNKVGVNNTVTTTAGNVISVI 430 440 450 460 470 480 >>CCDS43874.1 RC3H2 gene_id:54542|Hs108|chr9 (1191 aa) initn: 2943 init1: 2943 opt: 2943 Z-score: 2880.3 bits: 543.7 E(32554): 4.1e-154 Smith-Waterman score: 2943; 100.0% identity (100.0% similar) in 442 aa overlap (1-442:1-442) 10 20 30 40 50 60 pF1KE5 MPVQAAQWTEFLSCPICYNEFDENVHKPISLGCSHTVCKTCLNKLHRKACPFDQTAINTD :::::::::::::::::::::::::::::::::::::::::::::::::::::::::::: CCDS43 MPVQAAQWTEFLSCPICYNEFDENVHKPISLGCSHTVCKTCLNKLHRKACPFDQTAINTD 10 20 30 40 50 60 70 80 90 100 110 120 pF1KE5 IDVLPVNFALLQLVGAQVPDHQSIKLSNLGENKHYEVAKKCVEDLALYLKPLSGGKGVAS :::::::::::::::::::::::::::::::::::::::::::::::::::::::::::: CCDS43 IDVLPVNFALLQLVGAQVPDHQSIKLSNLGENKHYEVAKKCVEDLALYLKPLSGGKGVAS 70 80 90 100 110 120 130 140 150 160 170 180 pF1KE5 LNQSALSRPMQRKLVTLVNCQLVEEEGRVRAMRAARSLGERTVTELILQHQNPQQLSANL :::::::::::::::::::::::::::::::::::::::::::::::::::::::::::: CCDS43 LNQSALSRPMQRKLVTLVNCQLVEEEGRVRAMRAARSLGERTVTELILQHQNPQQLSANL 130 140 150 160 170 180 190 200 210 220 230 240 pF1KE5 WAAVRARGCQFLGPAMQEEALKLVLLALEDGSALSRKVLVLFVVQRLEPRFPQASKTSIG :::::::::::::::::::::::::::::::::::::::::::::::::::::::::::: CCDS43 WAAVRARGCQFLGPAMQEEALKLVLLALEDGSALSRKVLVLFVVQRLEPRFPQASKTSIG 190 200 210 220 230 240 250 260 270 280 290 300 pF1KE5 HVVQLLYRASCFKVTKRDEDSSLMQLKEEFRSYEALRREHDAQIVHIAMEAGLRISPEQW :::::::::::::::::::::::::::::::::::::::::::::::::::::::::::: CCDS43 HVVQLLYRASCFKVTKRDEDSSLMQLKEEFRSYEALRREHDAQIVHIAMEAGLRISPEQW 250 260 270 280 290 300 310 320 330 340 350 360 pF1KE5 SSLLYGDLAHKSHMQSIIDKLQSPESFAKSVQELTIVLQRTGDPANLNRLRPHLELLANI :::::::::::::::::::::::::::::::::::::::::::::::::::::::::::: CCDS43 SSLLYGDLAHKSHMQSIIDKLQSPESFAKSVQELTIVLQRTGDPANLNRLRPHLELLANI 310 320 330 340 350 360 370 380 390 400 410 420 pF1KE5 DPNPDAVSPTWEQLENAMVAVKTVVHGLVDFIQNYSRKGHETPQPQPNSKYKTSMCRDLR :::::::::::::::::::::::::::::::::::::::::::::::::::::::::::: CCDS43 DPNPDAVSPTWEQLENAMVAVKTVVHGLVDFIQNYSRKGHETPQPQPNSKYKTSMCRDLR 370 380 390 400 410 420 430 440 450 460 470 480 pF1KE5 QQGGCPRGTNCTFAHSQEELEKCNPRGLYLHCCLLSSVASLGTVHNELYKQQHCDREKIS :::::::::::::::::::::: CCDS43 QQGGCPRGTNCTFAHSQEELEKYRLRNKKINATVRTFPLLNKVGVNNTVTTTAGNVISVI 430 440 450 460 470 480 >>CCDS72987.1 RC3H1 gene_id:149041|Hs108|chr1 (1125 aa) initn: 2393 init1: 1915 opt: 2512 Z-score: 2459.3 bits: 465.7 E(32554): 1.2e-130 Smith-Waterman score: 2512; 84.0% identity (94.8% similar) in 445 aa overlap (1-442:1-445) 10 20 30 40 50 60 pF1KE5 MPVQAAQWTEFLSCPICYNEFDENVHKPISLGCSHTVCKTCLNKLHRKACPFDQTAINTD ::::: :::.::::::: . :::...:::::::.::::: :::::::::::::::.:::: CCDS72 MPVQAPQWTDFLSCPICTQTFDETIRKPISLGCGHTVCKMCLNKLHRKACPFDQTTINTD 10 20 30 40 50 60 70 80 90 100 110 pF1KE5 IDVLPVNFALLQLVGAQVPDHQSIKL-SNLGENKHYEVAKKCVEDLALYLKPLSGGKGVA :..:::: :::::::::::..: : : :.. ..:::: ::::::.:::::::::...::. CCDS72 IELLPVNSALLQLVGAQVPEQQPITLCSGVEDTKHYEEAKKCVEELALYLKPLSSARGVG 70 80 90 100 110 120 120 130 140 150 160 170 pF1KE5 --SLNQSALSRPMQRKLVTLVNCQLVEEEGRVRAMRAARSLGERTVTELILQHQNPQQLS : .::.:::::::::::::.:::::::::.:::::::::::::::::::::::::::: CCDS72 LNSTTQSVLSRPMQRKLVTLVHCQLVEEEGRIRAMRAARSLGERTVTELILQHQNPQQLS 130 140 150 160 170 180 180 190 200 210 220 230 pF1KE5 ANLWAAVRARGCQFLGPAMQEEALKLVLLALEDGSALSRKVLVLFVVQRLEPRFPQASKT .::::::::::::::::::::::::::::::::::::::::::::::::::::::::::: CCDS72 SNLWAAVRARGCQFLGPAMQEEALKLVLLALEDGSALSRKVLVLFVVQRLEPRFPQASKT 190 200 210 220 230 240 240 250 260 270 280 290 pF1KE5 SIGHVVQLLYRASCFKVTKRDEDSSLMQLKEEFRSYEALRREHDAQIVHIAMEAGLRISP ::::::::::::::::::::::::::::::::::.:::::::::.:::.:::::::::.: CCDS72 SIGHVVQLLYRASCFKVTKRDEDSSLMQLKEEFRTYEALRREHDSQIVQIAMEAGLRIAP 250 260 270 280 290 300 300 310 320 330 340 350 pF1KE5 EQWSSLLYGDLAHKSHMQSIIDKLQSPESFAKSVQELTIVLQRTGDPANLNRLRPHLELL .::::::::: .:::::::::::::.: :::.:::::::.:::::::::::::::::::: CCDS72 DQWSSLLYGDQSHKSHMQSIIDKLQTPASFAQSVQELTIALQRTGDPANLNRLRPHLELL 310 320 330 340 350 360 360 370 380 390 400 410 pF1KE5 ANIDPNPDAVSPTWEQLENAMVAVKTVVHGLVDFIQNYSRKGHETPQPQPNSKYKTSMCR :::::.::: ::::::::..:::.::::::::.:::.:.:: . :: .::::: ::: CCDS72 ANIDPSPDAPPPTWEQLENGLVAVRTVVHGLVDYIQNHSKKGADQQQPPQHSKYKTYMCR 370 380 390 400 410 420 420 430 440 450 460 470 pF1KE5 DLRQQGGCPRGTNCTFAHSQEELEKCNPRGLYLHCCLLSSVASLGTVHNELYKQQHCDRE :..:.::::::..:::::::::::: CCDS72 DMKQRGGCPRGASCTFAHSQEELEKFRKMNKRLVPRRPLSASLGQLNEVGLPSAAILPDE 430 440 450 460 470 480 >>CCDS30940.1 RC3H1 gene_id:149041|Hs108|chr1 (1133 aa) initn: 2393 init1: 1915 opt: 2512 Z-score: 2459.2 bits: 465.8 E(32554): 1.2e-130 Smith-Waterman score: 2512; 84.0% identity (94.8% similar) in 445 aa overlap (1-442:1-445) 10 20 30 40 50 60 pF1KE5 MPVQAAQWTEFLSCPICYNEFDENVHKPISLGCSHTVCKTCLNKLHRKACPFDQTAINTD ::::: :::.::::::: . :::...:::::::.::::: :::::::::::::::.:::: CCDS30 MPVQAPQWTDFLSCPICTQTFDETIRKPISLGCGHTVCKMCLNKLHRKACPFDQTTINTD 10 20 30 40 50 60 70 80 90 100 110 pF1KE5 IDVLPVNFALLQLVGAQVPDHQSIKL-SNLGENKHYEVAKKCVEDLALYLKPLSGGKGVA :..:::: :::::::::::..: : : :.. ..:::: ::::::.:::::::::...::. CCDS30 IELLPVNSALLQLVGAQVPEQQPITLCSGVEDTKHYEEAKKCVEELALYLKPLSSARGVG 70 80 90 100 110 120 120 130 140 150 160 170 pF1KE5 --SLNQSALSRPMQRKLVTLVNCQLVEEEGRVRAMRAARSLGERTVTELILQHQNPQQLS : .::.:::::::::::::.:::::::::.:::::::::::::::::::::::::::: CCDS30 LNSTTQSVLSRPMQRKLVTLVHCQLVEEEGRIRAMRAARSLGERTVTELILQHQNPQQLS 130 140 150 160 170 180 180 190 200 210 220 230 pF1KE5 ANLWAAVRARGCQFLGPAMQEEALKLVLLALEDGSALSRKVLVLFVVQRLEPRFPQASKT .::::::::::::::::::::::::::::::::::::::::::::::::::::::::::: CCDS30 SNLWAAVRARGCQFLGPAMQEEALKLVLLALEDGSALSRKVLVLFVVQRLEPRFPQASKT 190 200 210 220 230 240 240 250 260 270 280 290 pF1KE5 SIGHVVQLLYRASCFKVTKRDEDSSLMQLKEEFRSYEALRREHDAQIVHIAMEAGLRISP ::::::::::::::::::::::::::::::::::.:::::::::.:::.:::::::::.: CCDS30 SIGHVVQLLYRASCFKVTKRDEDSSLMQLKEEFRTYEALRREHDSQIVQIAMEAGLRIAP 250 260 270 280 290 300 300 310 320 330 340 350 pF1KE5 EQWSSLLYGDLAHKSHMQSIIDKLQSPESFAKSVQELTIVLQRTGDPANLNRLRPHLELL .::::::::: .:::::::::::::.: :::.:::::::.:::::::::::::::::::: CCDS30 DQWSSLLYGDQSHKSHMQSIIDKLQTPASFAQSVQELTIALQRTGDPANLNRLRPHLELL 310 320 330 340 350 360 360 370 380 390 400 410 pF1KE5 ANIDPNPDAVSPTWEQLENAMVAVKTVVHGLVDFIQNYSRKGHETPQPQPNSKYKTSMCR :::::.::: ::::::::..:::.::::::::.:::.:.:: . :: .::::: ::: CCDS30 ANIDPSPDAPPPTWEQLENGLVAVRTVVHGLVDYIQNHSKKGADQQQPPQHSKYKTYMCR 370 380 390 400 410 420 420 430 440 450 460 470 pF1KE5 DLRQQGGCPRGTNCTFAHSQEELEKCNPRGLYLHCCLLSSVASLGTVHNELYKQQHCDRE :..:.::::::..:::::::::::: CCDS30 DMKQRGGCPRGASCTFAHSQEELEKFRKMNKRLVPRRPLSASLGQLNEVGLPSAAILPDE 430 440 450 460 470 480 506 residues in 1 query sequences 18511270 residues in 32554 library sequences Tcomplib [36.3.4 Apr, 2011] (8 proc) start: Tue Nov 8 04:07:58 2016 done: Tue Nov 8 04:07:59 2016 Total Scan time: 3.120 Total Display time: 0.030 Function used was FASTA [36.3.4 Apr, 2011]