Result of FASTA (ccds) for
pFN21AE5454
FASTA searches a protein or DNA sequence data bank 36.3.4 Apr, 2011
Please cite:
W.R. Pearson & D.J. Lipman PNAS (1988) 85:2444-2448
Query: pF1KE5454, 353 aa
1>>>pF1KE5454 353 - 353 aa - 353 aa
Library: human.CCDS.faa
18921897 residues in 33420 sequences
Statistics: Expectation_n fit: rho(ln(x))= 5.1846+/-0.000852; mu= 16.6690+/- 0.051
mean_var=65.8347+/-13.010, 0's: 0 Z-trim(105.9): 51 B-trim: 0 in 0/51
Lambda= 0.158069
statistics sampled from 8759 (8810) to 8759 sequences
Algorithm: FASTA (3.7 Nov 2010) [optimized]
Parameters: BL50 matrix (15:-5), open/ext: -10/-2
ktup: 2, E-join: 1 (0.643), E-opt: 0.2 (0.264), width: 16
Scan time: 1.340
The best scores are: opt bits E(33420)
CCDS5049.1 GRIK2 gene_id:2898|Hs109|chr6 ( 869) 2090 485.8 5.9e-137
CCDS55045.1 GRIK2 gene_id:2898|Hs109|chr6 ( 892) 2090 485.8 6e-137
CCDS5048.1 GRIK2 gene_id:2898|Hs109|chr6 ( 908) 2090 485.8 6.1e-137
CCDS33530.1 GRIK1 gene_id:2897|Hs109|chr21 ( 905) 1538 359.9 4.8e-99
CCDS42913.1 GRIK1 gene_id:2897|Hs109|chr21 ( 918) 1538 359.9 4.8e-99
CCDS82658.1 GRIK1 gene_id:2897|Hs109|chr21 ( 920) 1538 359.9 4.9e-99
CCDS82656.1 GRIK1 gene_id:2897|Hs109|chr21 ( 934) 1538 359.9 4.9e-99
CCDS82659.1 GRIK1 gene_id:2897|Hs109|chr21 ( 949) 1538 359.9 5e-99
CCDS416.1 GRIK3 gene_id:2899|Hs109|chr1 ( 919) 1535 359.2 7.8e-99
CCDS14605.1 GRIA3 gene_id:2892|Hs109|chrX ( 894) 436 108.6 2.1e-23
CCDS14604.1 GRIA3 gene_id:2892|Hs109|chrX ( 894) 436 108.6 2.1e-23
CCDS43274.1 GRIA2 gene_id:2891|Hs109|chr4 ( 883) 400 100.4 6.2e-21
CCDS3797.1 GRIA2 gene_id:2891|Hs109|chr4 ( 883) 400 100.4 6.2e-21
CCDS43275.1 GRIA2 gene_id:2891|Hs109|chr4 ( 836) 391 98.3 2.5e-20
CCDS4322.1 GRIA1 gene_id:2890|Hs109|chr5 ( 906) 377 95.2 2.4e-19
CCDS47318.1 GRIA1 gene_id:2890|Hs109|chr5 ( 906) 377 95.2 2.4e-19
CCDS58988.1 GRIA1 gene_id:2890|Hs109|chr5 ( 916) 377 95.2 2.4e-19
CCDS58987.1 GRIA1 gene_id:2890|Hs109|chr5 ( 916) 377 95.2 2.4e-19
CCDS41707.1 GRIA4 gene_id:2893|Hs109|chr11 ( 433) 367 92.7 6.4e-19
CCDS8433.1 GRIK4 gene_id:2900|Hs109|chr11 ( 956) 370 93.6 7.6e-19
CCDS41706.1 GRIA4 gene_id:2893|Hs109|chr11 ( 884) 367 92.9 1.1e-18
CCDS8333.1 GRIA4 gene_id:2893|Hs109|chr11 ( 902) 367 92.9 1.2e-18
CCDS12595.1 GRIK5 gene_id:2901|Hs109|chr19 ( 980) 361 91.5 3.2e-18
CCDS77305.1 GRIK5 gene_id:2901|Hs109|chr19 ( 981) 361 91.5 3.2e-18
CCDS58989.1 GRIA1 gene_id:2890|Hs109|chr5 ( 837) 340 86.7 7.8e-17
>>CCDS5049.1 GRIK2 gene_id:2898|Hs109|chr6 (869 aa)
initn: 2090 init1: 2090 opt: 2090 Z-score: 2572.4 bits: 485.8 E(33420): 5.9e-137
Smith-Waterman score: 2090; 99.4% identity (99.7% similar) in 319 aa overlap (1-319:1-319)
10 20 30 40 50 60
pF1KE5 MKIIFPILSNPVFRRTVKLLLCLLWIGYSQGTTHVLRFGGIFEYVESGPMGAEELAFRFA
::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
CCDS50 MKIIFPILSNPVFRRTVKLLLCLLWIGYSQGTTHVLRFGGIFEYVESGPMGAEELAFRFA
10 20 30 40 50 60
70 80 90 100 110 120
pF1KE5 VNTINRNRTLLPNTTLTYDTQKINLYDSFEASKKACDQLSLGVAAIFGPSHSSSANAVQS
::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
CCDS50 VNTINRNRTLLPNTTLTYDTQKINLYDSFEASKKACDQLSLGVAAIFGPSHSSSANAVQS
70 80 90 100 110 120
130 140 150 160 170 180
pF1KE5 ICNALGVPHIQTRWKHQVSDNKDSFYVSLYPDFSSLSRAILDLVQFFKWKTVTVVYDDST
::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
CCDS50 ICNALGVPHIQTRWKHQVSDNKDSFYVSLYPDFSSLSRAILDLVQFFKWKTVTVVYDDST
130 140 150 160 170 180
190 200 210 220 230 240
pF1KE5 GLIRLQELIKAPSRYNLRLKIRQLPADTKDAKPLLKEMKRGKEFHVIFDCSHEMAAGILK
::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
CCDS50 GLIRLQELIKAPSRYNLRLKIRQLPADTKDAKPLLKEMKRGKEFHVIFDCSHEMAAGILK
190 200 210 220 230 240
250 260 270 280 290 300
pF1KE5 QALAMGMMTEYYHYIFTTLDLFALDVEPYRYSGVNMTGFRILNTENTQVSSIIEKWSMER
::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
CCDS50 QALAMGMMTEYYHYIFTTLDLFALDVEPYRYSGVNMTGFRILNTENTQVSSIIEKWSMER
250 260 270 280 290 300
310 320 330 340 350
pF1KE5 LQAPPKPDSGLLDGFMTMEFHSCCPGWSAMARSHLTATSASWVQAILLPQPPE
::::::::::::::::: .
CCDS50 LQAPPKPDSGLLDGFMTTDAALMYDAVHVVSVAVQQFPQMTVSSLQCNRHKPWRFGTRFM
310 320 330 340 350 360
>>CCDS55045.1 GRIK2 gene_id:2898|Hs109|chr6 (892 aa)
initn: 2090 init1: 2090 opt: 2090 Z-score: 2572.3 bits: 485.8 E(33420): 6e-137
Smith-Waterman score: 2090; 99.4% identity (99.7% similar) in 319 aa overlap (1-319:1-319)
10 20 30 40 50 60
pF1KE5 MKIIFPILSNPVFRRTVKLLLCLLWIGYSQGTTHVLRFGGIFEYVESGPMGAEELAFRFA
::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
CCDS55 MKIIFPILSNPVFRRTVKLLLCLLWIGYSQGTTHVLRFGGIFEYVESGPMGAEELAFRFA
10 20 30 40 50 60
70 80 90 100 110 120
pF1KE5 VNTINRNRTLLPNTTLTYDTQKINLYDSFEASKKACDQLSLGVAAIFGPSHSSSANAVQS
::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
CCDS55 VNTINRNRTLLPNTTLTYDTQKINLYDSFEASKKACDQLSLGVAAIFGPSHSSSANAVQS
70 80 90 100 110 120
130 140 150 160 170 180
pF1KE5 ICNALGVPHIQTRWKHQVSDNKDSFYVSLYPDFSSLSRAILDLVQFFKWKTVTVVYDDST
::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
CCDS55 ICNALGVPHIQTRWKHQVSDNKDSFYVSLYPDFSSLSRAILDLVQFFKWKTVTVVYDDST
130 140 150 160 170 180
190 200 210 220 230 240
pF1KE5 GLIRLQELIKAPSRYNLRLKIRQLPADTKDAKPLLKEMKRGKEFHVIFDCSHEMAAGILK
::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
CCDS55 GLIRLQELIKAPSRYNLRLKIRQLPADTKDAKPLLKEMKRGKEFHVIFDCSHEMAAGILK
190 200 210 220 230 240
250 260 270 280 290 300
pF1KE5 QALAMGMMTEYYHYIFTTLDLFALDVEPYRYSGVNMTGFRILNTENTQVSSIIEKWSMER
::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
CCDS55 QALAMGMMTEYYHYIFTTLDLFALDVEPYRYSGVNMTGFRILNTENTQVSSIIEKWSMER
250 260 270 280 290 300
310 320 330 340 350
pF1KE5 LQAPPKPDSGLLDGFMTMEFHSCCPGWSAMARSHLTATSASWVQAILLPQPPE
::::::::::::::::: .
CCDS55 LQAPPKPDSGLLDGFMTTDAALMYDAVHVVSVAVQQFPQMTVSSLQCNRHKPWRFGTRFM
310 320 330 340 350 360
>>CCDS5048.1 GRIK2 gene_id:2898|Hs109|chr6 (908 aa)
initn: 2090 init1: 2090 opt: 2090 Z-score: 2572.2 bits: 485.8 E(33420): 6.1e-137
Smith-Waterman score: 2090; 99.4% identity (99.7% similar) in 319 aa overlap (1-319:1-319)
10 20 30 40 50 60
pF1KE5 MKIIFPILSNPVFRRTVKLLLCLLWIGYSQGTTHVLRFGGIFEYVESGPMGAEELAFRFA
::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
CCDS50 MKIIFPILSNPVFRRTVKLLLCLLWIGYSQGTTHVLRFGGIFEYVESGPMGAEELAFRFA
10 20 30 40 50 60
70 80 90 100 110 120
pF1KE5 VNTINRNRTLLPNTTLTYDTQKINLYDSFEASKKACDQLSLGVAAIFGPSHSSSANAVQS
::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
CCDS50 VNTINRNRTLLPNTTLTYDTQKINLYDSFEASKKACDQLSLGVAAIFGPSHSSSANAVQS
70 80 90 100 110 120
130 140 150 160 170 180
pF1KE5 ICNALGVPHIQTRWKHQVSDNKDSFYVSLYPDFSSLSRAILDLVQFFKWKTVTVVYDDST
::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
CCDS50 ICNALGVPHIQTRWKHQVSDNKDSFYVSLYPDFSSLSRAILDLVQFFKWKTVTVVYDDST
130 140 150 160 170 180
190 200 210 220 230 240
pF1KE5 GLIRLQELIKAPSRYNLRLKIRQLPADTKDAKPLLKEMKRGKEFHVIFDCSHEMAAGILK
::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
CCDS50 GLIRLQELIKAPSRYNLRLKIRQLPADTKDAKPLLKEMKRGKEFHVIFDCSHEMAAGILK
190 200 210 220 230 240
250 260 270 280 290 300
pF1KE5 QALAMGMMTEYYHYIFTTLDLFALDVEPYRYSGVNMTGFRILNTENTQVSSIIEKWSMER
::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
CCDS50 QALAMGMMTEYYHYIFTTLDLFALDVEPYRYSGVNMTGFRILNTENTQVSSIIEKWSMER
250 260 270 280 290 300
310 320 330 340 350
pF1KE5 LQAPPKPDSGLLDGFMTMEFHSCCPGWSAMARSHLTATSASWVQAILLPQPPE
::::::::::::::::: .
CCDS50 LQAPPKPDSGLLDGFMTTDAALMYDAVHVVSVAVQQFPQMTVSSLQCNRHKPWRFGTRFM
310 320 330 340 350 360
>>CCDS33530.1 GRIK1 gene_id:2897|Hs109|chr21 (905 aa)
initn: 1534 init1: 1534 opt: 1538 Z-score: 1891.9 bits: 359.9 E(33420): 4.8e-99
Smith-Waterman score: 1538; 73.7% identity (89.5% similar) in 315 aa overlap (7-319:6-320)
10 20 30 40 50
pF1KE5 MKIIFPILSNPVF--RRTVKLLLCLLWIGYSQGTTHVLRFGGIFEYVESGPMGAEELAFR
.:..: . : : :: .: : . .:::.::::: ::. :...:::::.
CCDS33 MEHGTLLAQPGLWTRDTSWALLYFLCYILPQTAPQVLRIGGIFETVENEPVNVEELAFK
10 20 30 40 50
60 70 80 90 100 110
pF1KE5 FAVNTINRNRTLLPNTTLTYDTQKINLYDSFEASKKACDQLSLGVAAIFGPSHSSSANAV
:::..:::::::.:::::::: :.:::.::::::..:::::.:::::.::::::::..::
CCDS33 FAVTSINRNRTLMPNTTLTYDIQRINLFDSFEASRRACDQLALGVAALFGPSHSSSVSAV
60 70 80 90 100 110
120 130 140 150 160 170
pF1KE5 QSICNALGVPHIQTRWKHQVSDNKDSFYVSLYPDFSSLSRAILDLVQFFKWKTVTVVYDD
::::::: :::::::::: :::: ::..::::....:::::::: ...::::::::.:
CCDS33 QSICNALEVPHIQTRWKHPSVDNKDLFYINLYPDYAAISRAILDLVLYYNWKTVTVVYED
120 130 140 150 160 170
180 190 200 210 220 230
pF1KE5 STGLIRLQELIKAPSRYNLRLKIRQLPADTKDAKPLLKEMKRGKEFHVIFDCSHEMAAGI
::::::::::::::::::...::::::. .:::::::::::.::::.:::::::: :: :
CCDS33 STGLIRLQELIKAPSRYNIKIKIRQLPSGNKDAKPLLKEMKKGKEFYVIFDCSHETAAEI
180 190 200 210 220 230
240 250 260 270 280 290
pF1KE5 LKQALAMGMMTEYYHYIFTTLDLFALDVEPYRYSGVNMTGFRILNTENTQVSSIIEKWSM
::: : ::::::::::.::::::::::.: ::::::::::::.:: .: .::::::::::
CCDS33 LKQILFMGMMTEYYHYFFTTLDLFALDLELYRYSGVNMTGFRLLNIDNPHVSSIIEKWSM
240 250 260 270 280 290
300 310 320 330 340 350
pF1KE5 ERLQAPPKPDSGLLDGFMTMEFHSCCPGWSAMARSHLTATSASWVQAILLPQPPE
:::::::.:..:::::.:: :
CCDS33 ERLQAPPRPETGLLDGMMTTEAALMYDAVYMVAIASHRASQLTVSSLQCHRHKPWRLGPR
300 310 320 330 340 350
>>CCDS42913.1 GRIK1 gene_id:2897|Hs109|chr21 (918 aa)
initn: 1534 init1: 1534 opt: 1538 Z-score: 1891.8 bits: 359.9 E(33420): 4.8e-99
Smith-Waterman score: 1538; 73.7% identity (89.5% similar) in 315 aa overlap (7-319:6-320)
10 20 30 40 50
pF1KE5 MKIIFPILSNPVF--RRTVKLLLCLLWIGYSQGTTHVLRFGGIFEYVESGPMGAEELAFR
.:..: . : : :: .: : . .:::.::::: ::. :...:::::.
CCDS42 MEHGTLLAQPGLWTRDTSWALLYFLCYILPQTAPQVLRIGGIFETVENEPVNVEELAFK
10 20 30 40 50
60 70 80 90 100 110
pF1KE5 FAVNTINRNRTLLPNTTLTYDTQKINLYDSFEASKKACDQLSLGVAAIFGPSHSSSANAV
:::..:::::::.:::::::: :.:::.::::::..:::::.:::::.::::::::..::
CCDS42 FAVTSINRNRTLMPNTTLTYDIQRINLFDSFEASRRACDQLALGVAALFGPSHSSSVSAV
60 70 80 90 100 110
120 130 140 150 160 170
pF1KE5 QSICNALGVPHIQTRWKHQVSDNKDSFYVSLYPDFSSLSRAILDLVQFFKWKTVTVVYDD
::::::: :::::::::: :::: ::..::::....:::::::: ...::::::::.:
CCDS42 QSICNALEVPHIQTRWKHPSVDNKDLFYINLYPDYAAISRAILDLVLYYNWKTVTVVYED
120 130 140 150 160 170
180 190 200 210 220 230
pF1KE5 STGLIRLQELIKAPSRYNLRLKIRQLPADTKDAKPLLKEMKRGKEFHVIFDCSHEMAAGI
::::::::::::::::::...::::::. .:::::::::::.::::.:::::::: :: :
CCDS42 STGLIRLQELIKAPSRYNIKIKIRQLPSGNKDAKPLLKEMKKGKEFYVIFDCSHETAAEI
180 190 200 210 220 230
240 250 260 270 280 290
pF1KE5 LKQALAMGMMTEYYHYIFTTLDLFALDVEPYRYSGVNMTGFRILNTENTQVSSIIEKWSM
::: : ::::::::::.::::::::::.: ::::::::::::.:: .: .::::::::::
CCDS42 LKQILFMGMMTEYYHYFFTTLDLFALDLELYRYSGVNMTGFRLLNIDNPHVSSIIEKWSM
240 250 260 270 280 290
300 310 320 330 340 350
pF1KE5 ERLQAPPKPDSGLLDGFMTMEFHSCCPGWSAMARSHLTATSASWVQAILLPQPPE
:::::::.:..:::::.:: :
CCDS42 ERLQAPPRPETGLLDGMMTTEAALMYDAVYMVAIASHRASQLTVSSLQCHRHKPWRLGPR
300 310 320 330 340 350
>>CCDS82658.1 GRIK1 gene_id:2897|Hs109|chr21 (920 aa)
initn: 1534 init1: 1534 opt: 1538 Z-score: 1891.8 bits: 359.9 E(33420): 4.9e-99
Smith-Waterman score: 1538; 73.7% identity (89.5% similar) in 315 aa overlap (7-319:6-320)
10 20 30 40 50
pF1KE5 MKIIFPILSNPVF--RRTVKLLLCLLWIGYSQGTTHVLRFGGIFEYVESGPMGAEELAFR
.:..: . : : :: .: : . .:::.::::: ::. :...:::::.
CCDS82 MEHGTLLAQPGLWTRDTSWALLYFLCYILPQTAPQVLRIGGIFETVENEPVNVEELAFK
10 20 30 40 50
60 70 80 90 100 110
pF1KE5 FAVNTINRNRTLLPNTTLTYDTQKINLYDSFEASKKACDQLSLGVAAIFGPSHSSSANAV
:::..:::::::.:::::::: :.:::.::::::..:::::.:::::.::::::::..::
CCDS82 FAVTSINRNRTLMPNTTLTYDIQRINLFDSFEASRRACDQLALGVAALFGPSHSSSVSAV
60 70 80 90 100 110
120 130 140 150 160 170
pF1KE5 QSICNALGVPHIQTRWKHQVSDNKDSFYVSLYPDFSSLSRAILDLVQFFKWKTVTVVYDD
::::::: :::::::::: :::: ::..::::....:::::::: ...::::::::.:
CCDS82 QSICNALEVPHIQTRWKHPSVDNKDLFYINLYPDYAAISRAILDLVLYYNWKTVTVVYED
120 130 140 150 160 170
180 190 200 210 220 230
pF1KE5 STGLIRLQELIKAPSRYNLRLKIRQLPADTKDAKPLLKEMKRGKEFHVIFDCSHEMAAGI
::::::::::::::::::...::::::. .:::::::::::.::::.:::::::: :: :
CCDS82 STGLIRLQELIKAPSRYNIKIKIRQLPSGNKDAKPLLKEMKKGKEFYVIFDCSHETAAEI
180 190 200 210 220 230
240 250 260 270 280 290
pF1KE5 LKQALAMGMMTEYYHYIFTTLDLFALDVEPYRYSGVNMTGFRILNTENTQVSSIIEKWSM
::: : ::::::::::.::::::::::.: ::::::::::::.:: .: .::::::::::
CCDS82 LKQILFMGMMTEYYHYFFTTLDLFALDLELYRYSGVNMTGFRLLNIDNPHVSSIIEKWSM
240 250 260 270 280 290
300 310 320 330 340 350
pF1KE5 ERLQAPPKPDSGLLDGFMTMEFHSCCPGWSAMARSHLTATSASWVQAILLPQPPE
:::::::.:..:::::.:: :
CCDS82 ERLQAPPRPETGLLDGMMTTEAALMYDAVYMVAIASHRASQLTVSSLQCHRHKPWRLGPR
300 310 320 330 340 350
>>CCDS82656.1 GRIK1 gene_id:2897|Hs109|chr21 (934 aa)
initn: 1534 init1: 1534 opt: 1538 Z-score: 1891.7 bits: 359.9 E(33420): 4.9e-99
Smith-Waterman score: 1538; 73.7% identity (89.5% similar) in 315 aa overlap (7-319:6-320)
10 20 30 40 50
pF1KE5 MKIIFPILSNPVF--RRTVKLLLCLLWIGYSQGTTHVLRFGGIFEYVESGPMGAEELAFR
.:..: . : : :: .: : . .:::.::::: ::. :...:::::.
CCDS82 MEHGTLLAQPGLWTRDTSWALLYFLCYILPQTAPQVLRIGGIFETVENEPVNVEELAFK
10 20 30 40 50
60 70 80 90 100 110
pF1KE5 FAVNTINRNRTLLPNTTLTYDTQKINLYDSFEASKKACDQLSLGVAAIFGPSHSSSANAV
:::..:::::::.:::::::: :.:::.::::::..:::::.:::::.::::::::..::
CCDS82 FAVTSINRNRTLMPNTTLTYDIQRINLFDSFEASRRACDQLALGVAALFGPSHSSSVSAV
60 70 80 90 100 110
120 130 140 150 160 170
pF1KE5 QSICNALGVPHIQTRWKHQVSDNKDSFYVSLYPDFSSLSRAILDLVQFFKWKTVTVVYDD
::::::: :::::::::: :::: ::..::::....:::::::: ...::::::::.:
CCDS82 QSICNALEVPHIQTRWKHPSVDNKDLFYINLYPDYAAISRAILDLVLYYNWKTVTVVYED
120 130 140 150 160 170
180 190 200 210 220 230
pF1KE5 STGLIRLQELIKAPSRYNLRLKIRQLPADTKDAKPLLKEMKRGKEFHVIFDCSHEMAAGI
::::::::::::::::::...::::::. .:::::::::::.::::.:::::::: :: :
CCDS82 STGLIRLQELIKAPSRYNIKIKIRQLPSGNKDAKPLLKEMKKGKEFYVIFDCSHETAAEI
180 190 200 210 220 230
240 250 260 270 280 290
pF1KE5 LKQALAMGMMTEYYHYIFTTLDLFALDVEPYRYSGVNMTGFRILNTENTQVSSIIEKWSM
::: : ::::::::::.::::::::::.: ::::::::::::.:: .: .::::::::::
CCDS82 LKQILFMGMMTEYYHYFFTTLDLFALDLELYRYSGVNMTGFRLLNIDNPHVSSIIEKWSM
240 250 260 270 280 290
300 310 320 330 340 350
pF1KE5 ERLQAPPKPDSGLLDGFMTMEFHSCCPGWSAMARSHLTATSASWVQAILLPQPPE
:::::::.:..:::::.:: :
CCDS82 ERLQAPPRPETGLLDGMMTTEAALMYDAVYMVAIASHRASQLTVSSLQCHRHKPWRLGPR
300 310 320 330 340 350
>>CCDS82659.1 GRIK1 gene_id:2897|Hs109|chr21 (949 aa)
initn: 1534 init1: 1534 opt: 1538 Z-score: 1891.6 bits: 359.9 E(33420): 5e-99
Smith-Waterman score: 1538; 73.7% identity (89.5% similar) in 315 aa overlap (7-319:6-320)
10 20 30 40 50
pF1KE5 MKIIFPILSNPVF--RRTVKLLLCLLWIGYSQGTTHVLRFGGIFEYVESGPMGAEELAFR
.:..: . : : :: .: : . .:::.::::: ::. :...:::::.
CCDS82 MEHGTLLAQPGLWTRDTSWALLYFLCYILPQTAPQVLRIGGIFETVENEPVNVEELAFK
10 20 30 40 50
60 70 80 90 100 110
pF1KE5 FAVNTINRNRTLLPNTTLTYDTQKINLYDSFEASKKACDQLSLGVAAIFGPSHSSSANAV
:::..:::::::.:::::::: :.:::.::::::..:::::.:::::.::::::::..::
CCDS82 FAVTSINRNRTLMPNTTLTYDIQRINLFDSFEASRRACDQLALGVAALFGPSHSSSVSAV
60 70 80 90 100 110
120 130 140 150 160 170
pF1KE5 QSICNALGVPHIQTRWKHQVSDNKDSFYVSLYPDFSSLSRAILDLVQFFKWKTVTVVYDD
::::::: :::::::::: :::: ::..::::....:::::::: ...::::::::.:
CCDS82 QSICNALEVPHIQTRWKHPSVDNKDLFYINLYPDYAAISRAILDLVLYYNWKTVTVVYED
120 130 140 150 160 170
180 190 200 210 220 230
pF1KE5 STGLIRLQELIKAPSRYNLRLKIRQLPADTKDAKPLLKEMKRGKEFHVIFDCSHEMAAGI
::::::::::::::::::...::::::. .:::::::::::.::::.:::::::: :: :
CCDS82 STGLIRLQELIKAPSRYNIKIKIRQLPSGNKDAKPLLKEMKKGKEFYVIFDCSHETAAEI
180 190 200 210 220 230
240 250 260 270 280 290
pF1KE5 LKQALAMGMMTEYYHYIFTTLDLFALDVEPYRYSGVNMTGFRILNTENTQVSSIIEKWSM
::: : ::::::::::.::::::::::.: ::::::::::::.:: .: .::::::::::
CCDS82 LKQILFMGMMTEYYHYFFTTLDLFALDLELYRYSGVNMTGFRLLNIDNPHVSSIIEKWSM
240 250 260 270 280 290
300 310 320 330 340 350
pF1KE5 ERLQAPPKPDSGLLDGFMTMEFHSCCPGWSAMARSHLTATSASWVQAILLPQPPE
:::::::.:..:::::.:: :
CCDS82 ERLQAPPRPETGLLDGMMTTEAALMYDAVYMVAIASHRASQLTVSSLQCHRHKPWRLGPR
300 310 320 330 340 350
>>CCDS416.1 GRIK3 gene_id:2899|Hs109|chr1 (919 aa)
initn: 1525 init1: 1420 opt: 1535 Z-score: 1888.1 bits: 359.2 E(33420): 7.8e-99
Smith-Waterman score: 1535; 72.5% identity (89.8% similar) in 313 aa overlap (8-316:8-319)
10 20 30 40 50
pF1KE5 MKIIFPILSNPVFRRTVKLLLCLLWIGYSQGTTHVLRFGGIFEYVESGP----MGAEELA
: . :.. . ::.: .:: :.: ::.:.::::::.. :: :.::: :
CCDS41 MTAPWRRLRSLVWEYWAGLLVCAFWIPDSRGMPHVIRIGGIFEYAD-GPNAQVMNAEEHA
10 20 30 40 50
60 70 80 90 100 110
pF1KE5 FRFAVNTINRNRTLLPNTTLTYDTQKINLYDSFEASKKACDQLSLGVAAIFGPSHSSSAN
:::..: :::::::::::::::: :.:...:::::.:::::::.:::.::::::..: .:
CCDS41 FRFSANIINRNRTLLPNTTLTYDIQRIHFHDSFEATKKACDQLALGVVAIFGPSQGSCTN
60 70 80 90 100 110
120 130 140 150 160 170
pF1KE5 AVQSICNALGVPHIQTRWKHQVSDNKDSFYVSLYPDFSSLSRAILDLVQFFKWKTVTVVY
::::::::: ::::: ::::. ::::.:::.::::..:::.:::::::..::...::::
CCDS41 AVQSICNALEVPHIQLRWKHHPLDNKDTFYVNLYPDYASLSHAILDLVQYLKWRSATVVY
120 130 140 150 160 170
180 190 200 210 220 230
pF1KE5 DDSTGLIRLQELIKAPSRYNLRLKIRQLPADTKDAKPLLKEMKRGKEFHVIFDCSHEMAA
::::::::::::: ::::::.:::::::: :. :..:::::::::.::..:::::: :::
CCDS41 DDSTGLIRLQELIMAPSRYNIRLKIRQLPIDSDDSRPLLKEMKRGREFRIIFDCSHTMAA
180 190 200 210 220 230
240 250 260 270 280 290
pF1KE5 GILKQALAMGMMTEYYHYIFTTLDLFALDVEPYRYSGVNMTGFRILNTENTQVSSIIEKW
:::::.::::::::::.:::::::.:::.:::::::::.:::::::..: .::.:.:::
CCDS41 QILKQAMAMGMMTEYYHFIFTTLDLYALDLEPYRYSGVNLTGFRILNVDNPHVSAIVEKW
240 250 260 270 280 290
300 310 320 330 340 350
pF1KE5 SMERLQAPPKPDSGLLDGFMTMEFHSCCPGWSAMARSHLTATSASWVQAILLPQPPE
::::::: :. .:::::: :
CCDS41 SMERLQAAPRSESGLLDGVMMTDAALLYDAVHIVSVCYQRAPQMTVNSLQCHRHKAWRFG
300 310 320 330 340 350
>>CCDS14605.1 GRIA3 gene_id:2892|Hs109|chrX (894 aa)
initn: 384 init1: 187 opt: 436 Z-score: 533.8 bits: 108.6 E(33420): 2.1e-23
Smith-Waterman score: 436; 28.8% identity (62.1% similar) in 309 aa overlap (8-311:7-303)
10 20 30 40 50
pF1KE5 MKIIFPILSNPVFRRTVKLLLCLLWIGYSQGT-THVLRFGGIFEYVESGPMGAEELAFRF
... :.: . :.: :: :.:.: ... .::.: :. ::::
CCDS14 MARQKKMGQSVLRAVFFLVLGLL--GHSHGGFPNTISIGGLFMRNTV----QEHSAFRF
10 20 30 40 50
60 70 80 90 100 110
pF1KE5 AVNTINRNRTLLPNTT-LTYDTQKINLYDSFEASKKACDQLSLGVAAIFGPSHSSSANAV
::. : :.. . :.: ..... .:: ... :.:.: :: :::: . : :..
CCDS14 AVQLYNTNQNTTEKPFHLNYHVDHLDSSNSFSVTNAFCSQFSRGVYAIFGFYDQMSMNTL
60 70 80 90 100 110
120 130 140 150 160 170
pF1KE5 QSICNALGVPHIQTRWKHQVSDNKDSFYVSLYPDFSSLSRAILDLVQFFKWKTVTVVYDD
:.:.:: . . . .: .: ... : .:. :::.:. .::. . .::
CCDS14 TSFCGALHTSFVTPSFP---TDADVQFVIQMRP---ALKGAILSLLGHYKWEKFVYLYDT
120 130 140 150 160
180 190 200 210 220 230
pF1KE5 STGLIRLQELIKAPSRYNLRLKIRQLPA--DTKDAKPLLKEMKRGKEFHVIFDCSHEMAA
:. :: ...: . : .. :.. :... . ...:: : .: . ..:: :
CCDS14 ERGFSILQAIMEAAVQNNWQVTARSVGNIKDVQEFRRIIEEMDRRQEKRYLIDCEVERIN
170 180 190 200 210 220
240 250 260 270 280 290
pF1KE5 GILKQALAMGMMTEYYHYIFTTLDLFALDVEPYRYSGVNMTGFRILNTENTQVSSIIEKW
::.:.. .: .. :::....: . . .: ..:.:.:::.:.:.:: .:...:..:
CCDS14 TILEQVVILGKHSRGYHYMLANLGFTDILLERVMHGGANITGFQIVNNENPMVQQFIQRW
230 240 250 260 270 280
300 310 320 330 340 350
pF1KE5 -SMERLQAPPKPDSGLLDGFMTMEFHSCCPGWSAMARSHLTATSASWVQAILLPQPPE
... . : .. :
CCDS14 VRLDEREFPEAKNAPLKYTSALTHDAILVIAEAFRYLRRQRVDVSRRGSAGDCLANPAVP
290 300 310 320 330 340
353 residues in 1 query sequences
18921897 residues in 33420 library sequences
Tcomplib [36.3.4 Apr, 2011] (8 proc)
start: Tue Jul 16 16:01:36 2019 done: Tue Jul 16 16:01:37 2019
Total Scan time: 1.340 Total Display time: 0.060
Function used was FASTA [36.3.4 Apr, 2011]