FASTA searches a protein or DNA sequence data bank 36.3.4 Apr, 2011 Please cite: W.R. Pearson & D.J. Lipman PNAS (1988) 85:2444-2448 Query: pF1KE5169, 157 aa 1>>>pF1KE5169 157 - 157 aa - 157 aa Library: /omim/omim.rfq.tfa 60827320 residues in 85289 sequences Statistics: Expectation_n fit: rho(ln(x))= 4.9438+/-0.000299; mu= 14.2287+/- 0.019 mean_var=62.6200+/-12.353, 0's: 0 Z-trim(116.7): 8 B-trim: 1581 in 1/53 Lambda= 0.162076 statistics sampled from 28113 (28121) to 28113 sequences Algorithm: FASTA (3.7 Nov 2010) [optimized] Parameters: BL50 matrix (15:-5), open/ext: -10/-2 ktup: 2, E-join: 1 (0.725), E-opt: 0.2 (0.33), width: 16 Scan time: 4.920 The best scores are: opt bits E(85289) XP_016873443 (OMIM: 614460) PREDICTED: ubiquitin c ( 976) 1044 252.5 1.3e-66 XP_011518498 (OMIM: 614460) PREDICTED: ubiquitin c ( 976) 1044 252.5 1.3e-66 XP_016873442 (OMIM: 614460) PREDICTED: ubiquitin c (1275) 1044 252.6 1.6e-66 NP_060414 (OMIM: 614460) ubiquitin carboxyl-termin (1287) 1044 252.6 1.6e-66 NP_001269588 (OMIM: 614460) ubiquitin carboxyl-ter (1355) 1044 252.6 1.7e-66 NP_001317137 (OMIM: 614460) ubiquitin carboxyl-ter (1375) 1044 252.6 1.7e-66 >>XP_016873443 (OMIM: 614460) PREDICTED: ubiquitin carbo (976 aa) initn: 1044 init1: 1044 opt: 1044 Z-score: 1317.0 bits: 252.5 E(85289): 1.3e-66 Smith-Waterman score: 1044; 100.0% identity (100.0% similar) in 157 aa overlap (1-157:820-976) 10 20 30 pF1KE5 MKSMSQLAVLSRRWKPSEMKLDPFQEVVLE :::::::::::::::::::::::::::::: XP_016 VFLDYHIYEEDINISSNWEVFLEVLDGVEKMKSMSQLAVLSRRWKPSEMKLDPFQEVVLE 790 800 810 820 830 840 40 50 60 70 80 90 pF1KE5 SSSVDELREKLSEISGIPLDDIEFAKGRGTFPCDISVLDIHQDLDWNPKVSTLNVWPLYI :::::::::::::::::::::::::::::::::::::::::::::::::::::::::::: XP_016 SSSVDELREKLSEISGIPLDDIEFAKGRGTFPCDISVLDIHQDLDWNPKVSTLNVWPLYI 850 860 870 880 890 900 100 110 120 130 140 150 pF1KE5 CDDGAVIFYRDKTEELMELTDEQRNELMKKESSRLQKTGHRVTYSPRKEKALKIYLDGAP :::::::::::::::::::::::::::::::::::::::::::::::::::::::::::: XP_016 CDDGAVIFYRDKTEELMELTDEQRNELMKKESSRLQKTGHRVTYSPRKEKALKIYLDGAP 910 920 930 940 950 960 pF1KE5 NKDLTQD ::::::: XP_016 NKDLTQD 970 >>XP_011518498 (OMIM: 614460) PREDICTED: ubiquitin carbo (976 aa) initn: 1044 init1: 1044 opt: 1044 Z-score: 1317.0 bits: 252.5 E(85289): 1.3e-66 Smith-Waterman score: 1044; 100.0% identity (100.0% similar) in 157 aa overlap (1-157:820-976) 10 20 30 pF1KE5 MKSMSQLAVLSRRWKPSEMKLDPFQEVVLE :::::::::::::::::::::::::::::: XP_011 VFLDYHIYEEDINISSNWEVFLEVLDGVEKMKSMSQLAVLSRRWKPSEMKLDPFQEVVLE 790 800 810 820 830 840 40 50 60 70 80 90 pF1KE5 SSSVDELREKLSEISGIPLDDIEFAKGRGTFPCDISVLDIHQDLDWNPKVSTLNVWPLYI :::::::::::::::::::::::::::::::::::::::::::::::::::::::::::: XP_011 SSSVDELREKLSEISGIPLDDIEFAKGRGTFPCDISVLDIHQDLDWNPKVSTLNVWPLYI 850 860 870 880 890 900 100 110 120 130 140 150 pF1KE5 CDDGAVIFYRDKTEELMELTDEQRNELMKKESSRLQKTGHRVTYSPRKEKALKIYLDGAP :::::::::::::::::::::::::::::::::::::::::::::::::::::::::::: XP_011 CDDGAVIFYRDKTEELMELTDEQRNELMKKESSRLQKTGHRVTYSPRKEKALKIYLDGAP 910 920 930 940 950 960 pF1KE5 NKDLTQD ::::::: XP_011 NKDLTQD 970 >>XP_016873442 (OMIM: 614460) PREDICTED: ubiquitin carbo (1275 aa) initn: 1044 init1: 1044 opt: 1044 Z-score: 1315.3 bits: 252.6 E(85289): 1.6e-66 Smith-Waterman score: 1044; 100.0% identity (100.0% similar) in 157 aa overlap (1-157:1119-1275) 10 20 30 pF1KE5 MKSMSQLAVLSRRWKPSEMKLDPFQEVVLE :::::::::::::::::::::::::::::: XP_016 VFLDYHIYEEDINISSNWEVFLEVLDGVEKMKSMSQLAVLSRRWKPSEMKLDPFQEVVLE 1090 1100 1110 1120 1130 1140 40 50 60 70 80 90 pF1KE5 SSSVDELREKLSEISGIPLDDIEFAKGRGTFPCDISVLDIHQDLDWNPKVSTLNVWPLYI :::::::::::::::::::::::::::::::::::::::::::::::::::::::::::: XP_016 SSSVDELREKLSEISGIPLDDIEFAKGRGTFPCDISVLDIHQDLDWNPKVSTLNVWPLYI 1150 1160 1170 1180 1190 1200 100 110 120 130 140 150 pF1KE5 CDDGAVIFYRDKTEELMELTDEQRNELMKKESSRLQKTGHRVTYSPRKEKALKIYLDGAP :::::::::::::::::::::::::::::::::::::::::::::::::::::::::::: XP_016 CDDGAVIFYRDKTEELMELTDEQRNELMKKESSRLQKTGHRVTYSPRKEKALKIYLDGAP 1210 1220 1230 1240 1250 1260 pF1KE5 NKDLTQD ::::::: XP_016 NKDLTQD 1270 >>NP_060414 (OMIM: 614460) ubiquitin carboxyl-terminal h (1287 aa) initn: 1044 init1: 1044 opt: 1044 Z-score: 1315.2 bits: 252.6 E(85289): 1.6e-66 Smith-Waterman score: 1044; 100.0% identity (100.0% similar) in 157 aa overlap (1-157:1131-1287) 10 20 30 pF1KE5 MKSMSQLAVLSRRWKPSEMKLDPFQEVVLE :::::::::::::::::::::::::::::: NP_060 VFLDYHIYEEDINISSNWEVFLEVLDGVEKMKSMSQLAVLSRRWKPSEMKLDPFQEVVLE 1110 1120 1130 1140 1150 1160 40 50 60 70 80 90 pF1KE5 SSSVDELREKLSEISGIPLDDIEFAKGRGTFPCDISVLDIHQDLDWNPKVSTLNVWPLYI :::::::::::::::::::::::::::::::::::::::::::::::::::::::::::: NP_060 SSSVDELREKLSEISGIPLDDIEFAKGRGTFPCDISVLDIHQDLDWNPKVSTLNVWPLYI 1170 1180 1190 1200 1210 1220 100 110 120 130 140 150 pF1KE5 CDDGAVIFYRDKTEELMELTDEQRNELMKKESSRLQKTGHRVTYSPRKEKALKIYLDGAP :::::::::::::::::::::::::::::::::::::::::::::::::::::::::::: NP_060 CDDGAVIFYRDKTEELMELTDEQRNELMKKESSRLQKTGHRVTYSPRKEKALKIYLDGAP 1230 1240 1250 1260 1270 1280 pF1KE5 NKDLTQD ::::::: NP_060 NKDLTQD >>NP_001269588 (OMIM: 614460) ubiquitin carboxyl-termina (1355 aa) initn: 1044 init1: 1044 opt: 1044 Z-score: 1314.9 bits: 252.6 E(85289): 1.7e-66 Smith-Waterman score: 1044; 100.0% identity (100.0% similar) in 157 aa overlap (1-157:1199-1355) 10 20 30 pF1KE5 MKSMSQLAVLSRRWKPSEMKLDPFQEVVLE :::::::::::::::::::::::::::::: NP_001 VFLDYHIYEEDINISSNWEVFLEVLDGVEKMKSMSQLAVLSRRWKPSEMKLDPFQEVVLE 1170 1180 1190 1200 1210 1220 40 50 60 70 80 90 pF1KE5 SSSVDELREKLSEISGIPLDDIEFAKGRGTFPCDISVLDIHQDLDWNPKVSTLNVWPLYI :::::::::::::::::::::::::::::::::::::::::::::::::::::::::::: NP_001 SSSVDELREKLSEISGIPLDDIEFAKGRGTFPCDISVLDIHQDLDWNPKVSTLNVWPLYI 1230 1240 1250 1260 1270 1280 100 110 120 130 140 150 pF1KE5 CDDGAVIFYRDKTEELMELTDEQRNELMKKESSRLQKTGHRVTYSPRKEKALKIYLDGAP :::::::::::::::::::::::::::::::::::::::::::::::::::::::::::: NP_001 CDDGAVIFYRDKTEELMELTDEQRNELMKKESSRLQKTGHRVTYSPRKEKALKIYLDGAP 1290 1300 1310 1320 1330 1340 pF1KE5 NKDLTQD ::::::: NP_001 NKDLTQD 1350 >>NP_001317137 (OMIM: 614460) ubiquitin carboxyl-termina (1375 aa) initn: 1044 init1: 1044 opt: 1044 Z-score: 1314.8 bits: 252.6 E(85289): 1.7e-66 Smith-Waterman score: 1044; 100.0% identity (100.0% similar) in 157 aa overlap (1-157:1219-1375) 10 20 30 pF1KE5 MKSMSQLAVLSRRWKPSEMKLDPFQEVVLE :::::::::::::::::::::::::::::: NP_001 VFLDYHIYEEDINISSNWEVFLEVLDGVEKMKSMSQLAVLSRRWKPSEMKLDPFQEVVLE 1190 1200 1210 1220 1230 1240 40 50 60 70 80 90 pF1KE5 SSSVDELREKLSEISGIPLDDIEFAKGRGTFPCDISVLDIHQDLDWNPKVSTLNVWPLYI :::::::::::::::::::::::::::::::::::::::::::::::::::::::::::: NP_001 SSSVDELREKLSEISGIPLDDIEFAKGRGTFPCDISVLDIHQDLDWNPKVSTLNVWPLYI 1250 1260 1270 1280 1290 1300 100 110 120 130 140 150 pF1KE5 CDDGAVIFYRDKTEELMELTDEQRNELMKKESSRLQKTGHRVTYSPRKEKALKIYLDGAP :::::::::::::::::::::::::::::::::::::::::::::::::::::::::::: NP_001 CDDGAVIFYRDKTEELMELTDEQRNELMKKESSRLQKTGHRVTYSPRKEKALKIYLDGAP 1310 1320 1330 1340 1350 1360 pF1KE5 NKDLTQD ::::::: NP_001 NKDLTQD 1370 157 residues in 1 query sequences 60827320 residues in 85289 library sequences Tcomplib [36.3.4 Apr, 2011] (8 proc) start: Mon Nov 7 22:14:54 2016 done: Mon Nov 7 22:14:54 2016 Total Scan time: 4.920 Total Display time: -0.040 Function used was FASTA [36.3.4 Apr, 2011]