FASTA searches a protein or DNA sequence data bank 36.3.4 Apr, 2011 Please cite: W.R. Pearson & D.J. Lipman PNAS (1988) 85:2444-2448 Query: pF1KE5169, 157 aa 1>>>pF1KE5169 157 - 157 aa - 157 aa Library: human.CCDS.faa 18511270 residues in 32554 sequences Statistics: Expectation_n fit: rho(ln(x))= 5.2764+/-0.000676; mu= 12.4884+/- 0.041 mean_var=64.4230+/-12.828, 0's: 0 Z-trim(109.4): 9 B-trim: 0 in 0/51 Lambda= 0.159792 statistics sampled from 10879 (10883) to 10879 sequences Algorithm: FASTA (3.7 Nov 2010) [optimized] Parameters: BL50 matrix (15:-5), open/ext: -10/-2 ktup: 2, E-join: 1 (0.73), E-opt: 0.2 (0.334), width: 16 Scan time: 1.610 The best scores are: opt bits E(32554) CCDS41619.1 USP47 gene_id:55031|Hs108|chr11 (1287) 1044 249.1 6.7e-66 CCDS60725.1 USP47 gene_id:55031|Hs108|chr11 (1355) 1044 249.1 7e-66 CCDS81554.1 USP47 gene_id:55031|Hs108|chr11 (1375) 1044 249.1 7.1e-66 >>CCDS41619.1 USP47 gene_id:55031|Hs108|chr11 (1287 aa) initn: 1044 init1: 1044 opt: 1044 Z-score: 1296.6 bits: 249.1 E(32554): 6.7e-66 Smith-Waterman score: 1044; 100.0% identity (100.0% similar) in 157 aa overlap (1-157:1131-1287) 10 20 30 pF1KE5 MKSMSQLAVLSRRWKPSEMKLDPFQEVVLE :::::::::::::::::::::::::::::: CCDS41 VFLDYHIYEEDINISSNWEVFLEVLDGVEKMKSMSQLAVLSRRWKPSEMKLDPFQEVVLE 1110 1120 1130 1140 1150 1160 40 50 60 70 80 90 pF1KE5 SSSVDELREKLSEISGIPLDDIEFAKGRGTFPCDISVLDIHQDLDWNPKVSTLNVWPLYI :::::::::::::::::::::::::::::::::::::::::::::::::::::::::::: CCDS41 SSSVDELREKLSEISGIPLDDIEFAKGRGTFPCDISVLDIHQDLDWNPKVSTLNVWPLYI 1170 1180 1190 1200 1210 1220 100 110 120 130 140 150 pF1KE5 CDDGAVIFYRDKTEELMELTDEQRNELMKKESSRLQKTGHRVTYSPRKEKALKIYLDGAP :::::::::::::::::::::::::::::::::::::::::::::::::::::::::::: CCDS41 CDDGAVIFYRDKTEELMELTDEQRNELMKKESSRLQKTGHRVTYSPRKEKALKIYLDGAP 1230 1240 1250 1260 1270 1280 pF1KE5 NKDLTQD ::::::: CCDS41 NKDLTQD >>CCDS60725.1 USP47 gene_id:55031|Hs108|chr11 (1355 aa) initn: 1044 init1: 1044 opt: 1044 Z-score: 1296.3 bits: 249.1 E(32554): 7e-66 Smith-Waterman score: 1044; 100.0% identity (100.0% similar) in 157 aa overlap (1-157:1199-1355) 10 20 30 pF1KE5 MKSMSQLAVLSRRWKPSEMKLDPFQEVVLE :::::::::::::::::::::::::::::: CCDS60 VFLDYHIYEEDINISSNWEVFLEVLDGVEKMKSMSQLAVLSRRWKPSEMKLDPFQEVVLE 1170 1180 1190 1200 1210 1220 40 50 60 70 80 90 pF1KE5 SSSVDELREKLSEISGIPLDDIEFAKGRGTFPCDISVLDIHQDLDWNPKVSTLNVWPLYI :::::::::::::::::::::::::::::::::::::::::::::::::::::::::::: CCDS60 SSSVDELREKLSEISGIPLDDIEFAKGRGTFPCDISVLDIHQDLDWNPKVSTLNVWPLYI 1230 1240 1250 1260 1270 1280 100 110 120 130 140 150 pF1KE5 CDDGAVIFYRDKTEELMELTDEQRNELMKKESSRLQKTGHRVTYSPRKEKALKIYLDGAP :::::::::::::::::::::::::::::::::::::::::::::::::::::::::::: CCDS60 CDDGAVIFYRDKTEELMELTDEQRNELMKKESSRLQKTGHRVTYSPRKEKALKIYLDGAP 1290 1300 1310 1320 1330 1340 pF1KE5 NKDLTQD ::::::: CCDS60 NKDLTQD 1350 >>CCDS81554.1 USP47 gene_id:55031|Hs108|chr11 (1375 aa) initn: 1044 init1: 1044 opt: 1044 Z-score: 1296.2 bits: 249.1 E(32554): 7.1e-66 Smith-Waterman score: 1044; 100.0% identity (100.0% similar) in 157 aa overlap (1-157:1219-1375) 10 20 30 pF1KE5 MKSMSQLAVLSRRWKPSEMKLDPFQEVVLE :::::::::::::::::::::::::::::: CCDS81 VFLDYHIYEEDINISSNWEVFLEVLDGVEKMKSMSQLAVLSRRWKPSEMKLDPFQEVVLE 1190 1200 1210 1220 1230 1240 40 50 60 70 80 90 pF1KE5 SSSVDELREKLSEISGIPLDDIEFAKGRGTFPCDISVLDIHQDLDWNPKVSTLNVWPLYI :::::::::::::::::::::::::::::::::::::::::::::::::::::::::::: CCDS81 SSSVDELREKLSEISGIPLDDIEFAKGRGTFPCDISVLDIHQDLDWNPKVSTLNVWPLYI 1250 1260 1270 1280 1290 1300 100 110 120 130 140 150 pF1KE5 CDDGAVIFYRDKTEELMELTDEQRNELMKKESSRLQKTGHRVTYSPRKEKALKIYLDGAP :::::::::::::::::::::::::::::::::::::::::::::::::::::::::::: CCDS81 CDDGAVIFYRDKTEELMELTDEQRNELMKKESSRLQKTGHRVTYSPRKEKALKIYLDGAP 1310 1320 1330 1340 1350 1360 pF1KE5 NKDLTQD ::::::: CCDS81 NKDLTQD 1370 157 residues in 1 query sequences 18511270 residues in 32554 library sequences Tcomplib [36.3.4 Apr, 2011] (8 proc) start: Mon Nov 7 22:14:53 2016 done: Mon Nov 7 22:14:53 2016 Total Scan time: 1.610 Total Display time: -0.020 Function used was FASTA [36.3.4 Apr, 2011]