FASTA searches a protein or DNA sequence data bank 36.3.4 Apr, 2011
Please cite:
W.R. Pearson & D.J. Lipman PNAS (1988) 85:2444-2448

Query: pF1KE6176, 110 aa
  1>>>pF1KE6176 110 - 110 aa - 110 aa
Library: human.CCDS.faa
  18511270 residues in 32554 sequences

Statistics:  Expectation_n fit: rho(ln(x))= 4.6937+/-0.000582; mu= 12.6382+/- 0.035
 mean_var=51.1185+/-10.142, 0's: 0 Z-trim(111.1): 3  B-trim: 135 in 1/48
 Lambda= 0.179385
 statistics sampled from 12123 (12125) to 12123 sequences
Algorithm: FASTA (3.7 Nov 2010) [optimized]
Parameters: BL50 matrix (15:-5), open/ext: -10/-2
 ktup: 2, E-join: 1 (0.773), E-opt: 0.2 (0.372), width:  16
 Scan time:  1.120

The best scores are:                                      opt bits E(32554)
CCDS5753.1 IMMP2L gene_id:83943|Hs108|chr7         ( 175)  682 183.4 3.8e-47


>>CCDS5753.1 IMMP2L gene_id:83943|Hs108|chr7              (175 aa)
 initn: 679 init1: 679 opt: 682  Z-score: 960.0  bits: 183.4 E(32554): 3.8e-47
Smith-Waterman score: 682; 93.7% identity (96.4% similar) in 111 aa overlap (1-110:1-111)

               10        20        30        40        50        60
pF1KE6 MAQSQGWVKRYIKAFCKGFFVAVPVAVTFLDRVACVARVEGASMQPSLNPGGSQSSDVVL
       ::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
CCDS57 MAQSQGWVKRYIKAFCKGFFVAVPVAVTFLDRVACVARVEGASMQPSLNPGGSQSSDVVL
               10        20        30        40        50        60

               70        80        90       100        110         
pF1KE6 LNHWKVRNFEVHRGDIVSLVSPKNPEQKIIKRVIALEGDIVRD-GRKLKRI         
       ::::::::::::::::::::::::::::::::::::::::::  :.: . .         
CCDS57 LNHWKVRNFEVHRGDIVSLVSPKNPEQKIIKRVIALEGDIVRTIGHKNRYVKVPRGHIWV
               70        80        90       100       110       120

CCDS57 EGDHHGHSFDSNSFGPVSLGLLHAHATHILWPPERWQKLESVLPPERLPVQREEE
              130       140       150       160       170     




110 residues in 1 query   sequences
18511270 residues in 32554 library sequences
 Tcomplib [36.3.4 Apr, 2011] (8 proc)
 start: Tue Nov  8 10:05:57 2016 done: Tue Nov  8 10:05:57 2016
 Total Scan time:  1.120 Total Display time: -0.030

Function used was FASTA [36.3.4 Apr, 2011]