FASTA searches a protein or DNA sequence data bank 36.3.4 Apr, 2011 Please cite: W.R. Pearson & D.J. Lipman PNAS (1988) 85:2444-2448 Query: pF1KE6548, 108 aa 1>>>pF1KE6548 108 - 108 aa - 108 aa Library: /omim/omim.rfq.tfa 60827320 residues in 85289 sequences Statistics: Expectation_n fit: rho(ln(x))= 6.3350+/-0.000232; mu= 7.2252+/- 0.015 mean_var=100.4622+/-20.229, 0's: 0 Z-trim(124.7): 10 B-trim: 2467 in 1/58 Lambda= 0.127960 statistics sampled from 46756 (46774) to 46756 sequences Algorithm: FASTA (3.7 Nov 2010) [optimized] Parameters: BL50 matrix (15:-5), open/ext: -10/-2 ktup: 2, E-join: 1 (0.85), E-opt: 0.2 (0.548), width: 16 Scan time: 4.930 The best scores are: opt bits E(85289) NP_001001503 (OMIM: 602184) NADH dehydrogenase [ub ( 108) 723 141.9 2e-34 XP_016883848 (OMIM: 602184) PREDICTED: NADH dehydr ( 129) 370 76.8 9.3e-15 XP_011527888 (OMIM: 602184) PREDICTED: NADH dehydr ( 494) 370 77.1 2.8e-14 NP_066553 (OMIM: 602184) NADH dehydrogenase [ubiqu ( 473) 367 76.6 3.9e-14 >>NP_001001503 (OMIM: 602184) NADH dehydrogenase [ubiqui (108 aa) initn: 723 init1: 723 opt: 723 Z-score: 739.2 bits: 141.9 E(85289): 2e-34 Smith-Waterman score: 723; 100.0% identity (100.0% similar) in 108 aa overlap (1-108:1-108) 10 20 30 40 50 60 pF1KE6 MAAPCLLRQGRAGALKTMLQEAQVFRGLASTVSLSAESGKSEKGQPQNSKKQSPPKKPAP :::::::::::::::::::::::::::::::::::::::::::::::::::::::::::: NP_001 MAAPCLLRQGRAGALKTMLQEAQVFRGLASTVSLSAESGKSEKGQPQNSKKQSPPKKPAP 10 20 30 40 50 60 70 80 90 100 pF1KE6 VPAEPFDNTTYKNLQHHDYSTYTFLDLNLELSKFRMPQPSSGRESPRH :::::::::::::::::::::::::::::::::::::::::::::::: NP_001 VPAEPFDNTTYKNLQHHDYSTYTFLDLNLELSKFRMPQPSSGRESPRH 70 80 90 100 >>XP_016883848 (OMIM: 602184) PREDICTED: NADH dehydrogen (129 aa) initn: 709 init1: 364 opt: 370 Z-score: 385.9 bits: 76.8 E(85289): 9.3e-15 Smith-Waterman score: 671; 83.7% identity (83.7% similar) in 129 aa overlap (1-108:1-129) 10 20 30 40 50 pF1KE6 MAAPCLLRQGRAGALKTMLQEAQVFRGLASTVSLSAESGKSEKGQPQNSKKQSPPK---- :::::::::::::::::::::::::::::::::::::::::::::::::::::::: XP_016 MAAPCLLRQGRAGALKTMLQEAQVFRGLASTVSLSAESGKSEKGQPQNSKKQSPPKSVPT 10 20 30 40 50 60 60 70 80 90 pF1KE6 -----------------KPAPVPAEPFDNTTYKNLQHHDYSTYTFLDLNLELSKFRMPQP ::::::::::::::::::::::::::::::::::::::::::: XP_016 PHRRYSPCGDWKDASSLKPAPVPAEPFDNTTYKNLQHHDYSTYTFLDLNLELSKFRMPQP 70 80 90 100 110 120 100 pF1KE6 SSGRESPRH ::::::::: XP_016 SSGRESPRH >>XP_011527888 (OMIM: 602184) PREDICTED: NADH dehydrogen (494 aa) initn: 709 init1: 364 opt: 370 Z-score: 377.4 bits: 77.1 E(85289): 2.8e-14 Smith-Waterman score: 370; 85.7% identity (92.1% similar) in 63 aa overlap (46-108:432-494) 20 30 40 50 60 70 pF1KE6 KTMLQEAQVFRGLASTVSLSAESGKSEKGQPQNSKKQSPPKKPAPVPAEPFDNTTYKNLQ : .. :.. ::::::::::::::::::: XP_011 AEGEAMEDAAAPGDDRGGTQGVPTPHRRYSPCGDWKDASSLKPAPVPAEPFDNTTYKNLQ 410 420 430 440 450 460 80 90 100 pF1KE6 HHDYSTYTFLDLNLELSKFRMPQPSSGRESPRH ::::::::::::::::::::::::::::::::: XP_011 HHDYSTYTFLDLNLELSKFRMPQPSSGRESPRH 470 480 490 >-- initn: 389 init1: 359 opt: 359 Z-score: 366.4 bits: 75.1 E(85289): 1.1e-13 Smith-Waterman score: 359; 100.0% identity (100.0% similar) in 56 aa overlap (1-56:1-56) 10 20 30 40 50 60 pF1KE6 MAAPCLLRQGRAGALKTMLQEAQVFRGLASTVSLSAESGKSEKGQPQNSKKQSPPKKPAP :::::::::::::::::::::::::::::::::::::::::::::::::::::::: XP_011 MAAPCLLRQGRAGALKTMLQEAQVFRGLASTVSLSAESGKSEKGQPQNSKKQSPPKNVVE 10 20 30 40 50 60 70 80 90 100 pF1KE6 VPAEPFDNTTYKNLQHHDYSTYTFLDLNLELSKFRMPQPSSGRESPRH XP_011 PKERGKLLATQTAAELSKNLSSPSSYPPAVNKGRKVASPSPSGSVLFTDEGVPKFLSRKT 70 80 90 100 110 120 >>NP_066553 (OMIM: 602184) NADH dehydrogenase [ubiquinon (473 aa) initn: 389 init1: 361 opt: 367 Z-score: 374.7 bits: 76.6 E(85289): 3.9e-14 Smith-Waterman score: 367; 66.7% identity (83.3% similar) in 84 aa overlap (25-108:391-473) 10 20 30 40 50 pF1KE6 MAAPCLLRQGRAGALKTMLQEAQVFRGLASTVSLSAESGKSEKGQPQNSKKQSP :. .....: :: :.. . . .. NP_066 EGHLKGGQAIVEDQIPPSNLETVPVENNHGFHEKTAALKLEAE-GEAMEDAAAPGDDRGG 370 380 390 400 410 60 70 80 90 100 pF1KE6 PKKPAPVPAEPFDNTTYKNLQHHDYSTYTFLDLNLELSKFRMPQPSSGRESPRH ..::::::::::::::::::::::::::::::::::::::::::::::::::: NP_066 TQEPAPVPAEPFDNTTYKNLQHHDYSTYTFLDLNLELSKFRMPQPSSGRESPRH 420 430 440 450 460 470 >-- initn: 389 init1: 359 opt: 359 Z-score: 366.7 bits: 75.1 E(85289): 1.1e-13 Smith-Waterman score: 359; 100.0% identity (100.0% similar) in 56 aa overlap (1-56:1-56) 10 20 30 40 50 60 pF1KE6 MAAPCLLRQGRAGALKTMLQEAQVFRGLASTVSLSAESGKSEKGQPQNSKKQSPPKKPAP :::::::::::::::::::::::::::::::::::::::::::::::::::::::: NP_066 MAAPCLLRQGRAGALKTMLQEAQVFRGLASTVSLSAESGKSEKGQPQNSKKQSPPKNVVE 10 20 30 40 50 60 70 80 90 100 pF1KE6 VPAEPFDNTTYKNLQHHDYSTYTFLDLNLELSKFRMPQPSSGRESPRH NP_066 PKERGKLLATQTAAELSKNLSSPSSYPPAVNKGRKVASPSPSGSVLFTDEGVPKFLSRKT 70 80 90 100 110 120 108 residues in 1 query sequences 60827320 residues in 85289 library sequences Tcomplib [36.3.4 Apr, 2011] (8 proc) start: Tue Nov 8 14:18:35 2016 done: Tue Nov 8 14:18:36 2016 Total Scan time: 4.930 Total Display time: -0.030 Function used was FASTA [36.3.4 Apr, 2011]