FASTA searches a protein or DNA sequence data bank 36.3.4 Apr, 2011 Please cite: W.R. Pearson & D.J. Lipman PNAS (1988) 85:2444-2448 Query: pF1KE6548, 108 aa 1>>>pF1KE6548 108 - 108 aa - 108 aa Library: human.CCDS.faa 18511270 residues in 32554 sequences Statistics: Expectation_n fit: rho(ln(x))= 6.0702+/-0.000556; mu= 8.8811+/- 0.034 mean_var=98.4476+/-19.605, 0's: 0 Z-trim(116.8): 6 B-trim: 816 in 2/53 Lambda= 0.129262 statistics sampled from 17435 (17441) to 17435 sequences Algorithm: FASTA (3.7 Nov 2010) [optimized] Parameters: BL50 matrix (15:-5), open/ext: -10/-2 ktup: 2, E-join: 1 (0.846), E-opt: 0.2 (0.536), width: 16 Scan time: 1.490 The best scores are: opt bits E(32554) CCDS33573.1 NDUFV3 gene_id:4731|Hs108|chr21 ( 108) 723 143.1 3.1e-35 CCDS33572.1 NDUFV3 gene_id:4731|Hs108|chr21 ( 473) 367 77.2 9.7e-15 >>CCDS33573.1 NDUFV3 gene_id:4731|Hs108|chr21 (108 aa) initn: 723 init1: 723 opt: 723 Z-score: 745.9 bits: 143.1 E(32554): 3.1e-35 Smith-Waterman score: 723; 100.0% identity (100.0% similar) in 108 aa overlap (1-108:1-108) 10 20 30 40 50 60 pF1KE6 MAAPCLLRQGRAGALKTMLQEAQVFRGLASTVSLSAESGKSEKGQPQNSKKQSPPKKPAP :::::::::::::::::::::::::::::::::::::::::::::::::::::::::::: CCDS33 MAAPCLLRQGRAGALKTMLQEAQVFRGLASTVSLSAESGKSEKGQPQNSKKQSPPKKPAP 10 20 30 40 50 60 70 80 90 100 pF1KE6 VPAEPFDNTTYKNLQHHDYSTYTFLDLNLELSKFRMPQPSSGRESPRH :::::::::::::::::::::::::::::::::::::::::::::::: CCDS33 VPAEPFDNTTYKNLQHHDYSTYTFLDLNLELSKFRMPQPSSGRESPRH 70 80 90 100 >>CCDS33572.1 NDUFV3 gene_id:4731|Hs108|chr21 (473 aa) initn: 389 init1: 361 opt: 367 Z-score: 378.1 bits: 77.2 E(32554): 9.7e-15 Smith-Waterman score: 367; 66.7% identity (83.3% similar) in 84 aa overlap (25-108:391-473) 10 20 30 40 50 pF1KE6 MAAPCLLRQGRAGALKTMLQEAQVFRGLASTVSLSAESGKSEKGQPQNSKKQSP :. .....: :: :.. . . .. CCDS33 EGHLKGGQAIVEDQIPPSNLETVPVENNHGFHEKTAALKLEAE-GEAMEDAAAPGDDRGG 370 380 390 400 410 60 70 80 90 100 pF1KE6 PKKPAPVPAEPFDNTTYKNLQHHDYSTYTFLDLNLELSKFRMPQPSSGRESPRH ..::::::::::::::::::::::::::::::::::::::::::::::::::: CCDS33 TQEPAPVPAEPFDNTTYKNLQHHDYSTYTFLDLNLELSKFRMPQPSSGRESPRH 420 430 440 450 460 470 >-- initn: 389 init1: 359 opt: 359 Z-score: 370.1 bits: 75.7 E(32554): 2.7e-14 Smith-Waterman score: 359; 100.0% identity (100.0% similar) in 56 aa overlap (1-56:1-56) 10 20 30 40 50 60 pF1KE6 MAAPCLLRQGRAGALKTMLQEAQVFRGLASTVSLSAESGKSEKGQPQNSKKQSPPKKPAP :::::::::::::::::::::::::::::::::::::::::::::::::::::::: CCDS33 MAAPCLLRQGRAGALKTMLQEAQVFRGLASTVSLSAESGKSEKGQPQNSKKQSPPKNVVE 10 20 30 40 50 60 70 80 90 100 pF1KE6 VPAEPFDNTTYKNLQHHDYSTYTFLDLNLELSKFRMPQPSSGRESPRH CCDS33 PKERGKLLATQTAAELSKNLSSPSSYPPAVNKGRKVASPSPSGSVLFTDEGVPKFLSRKT 70 80 90 100 110 120 108 residues in 1 query sequences 18511270 residues in 32554 library sequences Tcomplib [36.3.4 Apr, 2011] (8 proc) start: Tue Nov 8 14:18:34 2016 done: Tue Nov 8 14:18:35 2016 Total Scan time: 1.490 Total Display time: -0.040 Function used was FASTA [36.3.4 Apr, 2011]