FASTA searches a protein or DNA sequence data bank 36.3.4 Apr, 2011 Please cite: W.R. Pearson & D.J. Lipman PNAS (1988) 85:2444-2448 Query: pF1KE6579, 144 aa 1>>>pF1KE6579 144 - 144 aa - 144 aa Library: human.CCDS.faa 18511270 residues in 32554 sequences Statistics: Expectation_n fit: rho(ln(x))= 7.5564+/-0.00064; mu= 3.5463+/- 0.039 mean_var=150.4980+/-30.345, 0's: 0 Z-trim(117.2): 7 B-trim: 136 in 1/52 Lambda= 0.104546 statistics sampled from 17937 (17944) to 17937 sequences Algorithm: FASTA (3.7 Nov 2010) [optimized] Parameters: BL50 matrix (15:-5), open/ext: -10/-2 ktup: 2, E-join: 1 (0.86), E-opt: 0.2 (0.551), width: 16 Scan time: 1.560 The best scores are: opt bits E(32554) CCDS41779.1 TROAP gene_id:10024|Hs108|chr12 ( 144) 1012 162.5 8.3e-41 CCDS61117.1 TROAP gene_id:10024|Hs108|chr12 ( 126) 778 127.1 3.2e-30 CCDS8784.1 TROAP gene_id:10024|Hs108|chr12 ( 778) 786 128.9 5.8e-30 >>CCDS41779.1 TROAP gene_id:10024|Hs108|chr12 (144 aa) initn: 1012 init1: 1012 opt: 1012 Z-score: 846.1 bits: 162.5 E(32554): 8.3e-41 Smith-Waterman score: 1012; 100.0% identity (100.0% similar) in 144 aa overlap (1-144:1-144) 10 20 30 40 50 60 pF1KE6 MTTRQATKDPLLRGVSPTPSKIPVRSQKRTPFPTVTSCAVDQENQDPRRWVQKPPLNIQR :::::::::::::::::::::::::::::::::::::::::::::::::::::::::::: CCDS41 MTTRQATKDPLLRGVSPTPSKIPVRSQKRTPFPTVTSCAVDQENQDPRRWVQKPPLNIQR 10 20 30 40 50 60 70 80 90 100 110 120 pF1KE6 PLVDSAGPRPKARHQAETSQRLVGISQPRNPLEELRPSPRGQNVGPGPPAQTVLVPAPGK :::::::::::::::::::::::::::::::::::::::::::::::::::::::::::: CCDS41 PLVDSAGPRPKARHQAETSQRLVGISQPRNPLEELRPSPRGQNVGPGPPAQTVLVPAPGK 70 80 90 100 110 120 130 140 pF1KE6 LFALRRSPFPPAKCHLARCHGLYL :::::::::::::::::::::::: CCDS41 LFALRRSPFPPAKCHLARCHGLYL 130 140 >>CCDS61117.1 TROAP gene_id:10024|Hs108|chr12 (126 aa) initn: 778 init1: 778 opt: 778 Z-score: 656.1 bits: 127.1 E(32554): 3.2e-30 Smith-Waterman score: 778; 100.0% identity (100.0% similar) in 112 aa overlap (1-112:1-112) 10 20 30 40 50 60 pF1KE6 MTTRQATKDPLLRGVSPTPSKIPVRSQKRTPFPTVTSCAVDQENQDPRRWVQKPPLNIQR :::::::::::::::::::::::::::::::::::::::::::::::::::::::::::: CCDS61 MTTRQATKDPLLRGVSPTPSKIPVRSQKRTPFPTVTSCAVDQENQDPRRWVQKPPLNIQR 10 20 30 40 50 60 70 80 90 100 110 120 pF1KE6 PLVDSAGPRPKARHQAETSQRLVGISQPRNPLEELRPSPRGQNVGPGPPAQTVLVPAPGK :::::::::::::::::::::::::::::::::::::::::::::::::::: CCDS61 PLVDSAGPRPKARHQAETSQRLVGISQPRNPLEELRPSPRGQNVGPGPPAQTGAMACTCN 70 80 90 100 110 120 130 140 pF1KE6 LFALRRSPFPPAKCHLARCHGLYL CCDS61 HSYSGG >>CCDS8784.1 TROAP gene_id:10024|Hs108|chr12 (778 aa) initn: 831 init1: 778 opt: 786 Z-score: 651.5 bits: 128.9 E(32554): 5.8e-30 Smith-Waterman score: 786; 82.9% identity (85.6% similar) in 146 aa overlap (1-138:1-143) 10 20 30 40 50 60 pF1KE6 MTTRQATKDPLLRGVSPTPSKIPVRSQKRTPFPTVTSCAVDQENQDPRRWVQKPPLNIQR :::::::::::::::::::::::::::::::::::::::::::::::::::::::::::: CCDS87 MTTRQATKDPLLRGVSPTPSKIPVRSQKRTPFPTVTSCAVDQENQDPRRWVQKPPLNIQR 10 20 30 40 50 60 70 80 90 100 110 120 pF1KE6 PLVDSAGPRPKARHQAETSQRLVGISQPRNPLEELRPSPRGQNVGPGPPAQTVLVPAPGK :::::::::::::::::::::::::::::::::::::::::::::::::::: ::: CCDS87 PLVDSAGPRPKARHQAETSQRLVGISQPRNPLEELRPSPRGQNVGPGPPAQT---EAPGT 70 80 90 100 110 130 140 pF1KE6 L--------FALRRSPFPPAKCHLARCHGLYL . .: : .:::.: CCDS87 IEFVADPAALATILSGEGVKSCHLGRQPSLAKRVLVRGSQGGTTQRVQGVRASAYLAPRT 120 130 140 150 160 170 144 residues in 1 query sequences 18511270 residues in 32554 library sequences Tcomplib [36.3.4 Apr, 2011] (8 proc) start: Tue Nov 8 14:33:44 2016 done: Tue Nov 8 14:33:44 2016 Total Scan time: 1.560 Total Display time: -0.050 Function used was FASTA [36.3.4 Apr, 2011]