FASTA searches a protein or DNA sequence data bank 36.3.4 Apr, 2011 Please cite: W.R. Pearson & D.J. Lipman PNAS (1988) 85:2444-2448 Query: pF1KE6181, 125 aa 1>>>pF1KE6181 125 - 125 aa - 125 aa Library: /omim/omim.rfq.tfa 60827320 residues in 85289 sequences Statistics: Expectation_n fit: rho(ln(x))= 4.7155+/-0.000253; mu= 14.1903+/- 0.016 mean_var=61.8708+/-12.530, 0's: 0 Z-trim(121.3): 8 B-trim: 117 in 1/50 Lambda= 0.163054 statistics sampled from 37776 (37784) to 37776 sequences Algorithm: FASTA (3.7 Nov 2010) [optimized] Parameters: BL50 matrix (15:-5), open/ext: -10/-2 ktup: 2, E-join: 1 (0.816), E-opt: 0.2 (0.443), width: 16 Scan time: 3.520 The best scores are: opt bits E(85289) NP_001013003 (OMIM: 614772,616501) cytochrome c ox ( 125) 895 217.8 3.7e-57 NP_001193570 (OMIM: 614772,616501) cytochrome c ox ( 155) 600 148.5 3.4e-36 NP_001288662 (OMIM: 614772,616501) cytochrome c ox ( 79) 562 139.3 9.8e-34 >>NP_001013003 (OMIM: 614772,616501) cytochrome c oxidas (125 aa) initn: 895 init1: 895 opt: 895 Z-score: 1147.2 bits: 217.8 E(85289): 3.7e-57 Smith-Waterman score: 895; 100.0% identity (100.0% similar) in 125 aa overlap (1-125:1-125) 10 20 30 40 50 60 pF1KE6 MGPGGPLLSPSRGFLLCKTGWHSNRLLGDCGPHTPVSTALSFIAVGMAAPSMKERQVCWG :::::::::::::::::::::::::::::::::::::::::::::::::::::::::::: NP_001 MGPGGPLLSPSRGFLLCKTGWHSNRLLGDCGPHTPVSTALSFIAVGMAAPSMKERQVCWG 10 20 30 40 50 60 70 80 90 100 110 120 pF1KE6 ARDEYWKCLDENLEDASQCKKLRSSFESSCPQQWIKYFDKRRDYLKFKEKFEAGQFEPSE :::::::::::::::::::::::::::::::::::::::::::::::::::::::::::: NP_001 ARDEYWKCLDENLEDASQCKKLRSSFESSCPQQWIKYFDKRRDYLKFKEKFEAGQFEPSE 70 80 90 100 110 120 pF1KE6 TTAKS ::::: NP_001 TTAKS >>NP_001193570 (OMIM: 614772,616501) cytochrome c oxidas (155 aa) initn: 600 init1: 600 opt: 600 Z-score: 770.9 bits: 148.5 E(85289): 3.4e-36 Smith-Waterman score: 600; 98.9% identity (98.9% similar) in 87 aa overlap (39-125:69-155) 10 20 30 40 50 60 pF1KE6 SPSRGFLLCKTGWHSNRLLGDCGPHTPVSTALSFIAVGMAAPSMKERQVCWGARDEYWKC : :::::::::::::::::::::::::::: NP_001 RTRHRALHRRLVACVTVSSRRHRKEAGRGRAESFIAVGMAAPSMKERQVCWGARDEYWKC 40 50 60 70 80 90 70 80 90 100 110 120 pF1KE6 LDENLEDASQCKKLRSSFESSCPQQWIKYFDKRRDYLKFKEKFEAGQFEPSETTAKS ::::::::::::::::::::::::::::::::::::::::::::::::::::::::: NP_001 LDENLEDASQCKKLRSSFESSCPQQWIKYFDKRRDYLKFKEKFEAGQFEPSETTAKS 100 110 120 130 140 150 >>NP_001288662 (OMIM: 614772,616501) cytochrome c oxidas (79 aa) initn: 562 init1: 562 opt: 562 Z-score: 726.6 bits: 139.3 E(85289): 9.8e-34 Smith-Waterman score: 562; 100.0% identity (100.0% similar) in 79 aa overlap (47-125:1-79) 20 30 40 50 60 70 pF1KE6 CKTGWHSNRLLGDCGPHTPVSTALSFIAVGMAAPSMKERQVCWGARDEYWKCLDENLEDA :::::::::::::::::::::::::::::: NP_001 MAAPSMKERQVCWGARDEYWKCLDENLEDA 10 20 30 80 90 100 110 120 pF1KE6 SQCKKLRSSFESSCPQQWIKYFDKRRDYLKFKEKFEAGQFEPSETTAKS ::::::::::::::::::::::::::::::::::::::::::::::::: NP_001 SQCKKLRSSFESSCPQQWIKYFDKRRDYLKFKEKFEAGQFEPSETTAKS 40 50 60 70 125 residues in 1 query sequences 60827320 residues in 85289 library sequences Tcomplib [36.3.4 Apr, 2011] (8 proc) start: Tue Nov 8 10:08:51 2016 done: Tue Nov 8 10:08:51 2016 Total Scan time: 3.520 Total Display time: -0.020 Function used was FASTA [36.3.4 Apr, 2011]