FASTA searches a protein or DNA sequence data bank 36.3.4 Apr, 2011 Please cite: W.R. Pearson & D.J. Lipman PNAS (1988) 85:2444-2448 Query: pF1KE6181, 125 aa 1>>>pF1KE6181 125 - 125 aa - 125 aa Library: human.CCDS.faa 18511270 residues in 32554 sequences Statistics: Expectation_n fit: rho(ln(x))= 4.9197+/-0.000505; mu= 12.9853+/- 0.031 mean_var=63.6766+/-12.707, 0's: 0 Z-trim(114.6): 9 B-trim: 0 in 0/51 Lambda= 0.160725 statistics sampled from 15184 (15192) to 15184 sequences Algorithm: FASTA (3.7 Nov 2010) [optimized] Parameters: BL50 matrix (15:-5), open/ext: -10/-2 ktup: 2, E-join: 1 (0.831), E-opt: 0.2 (0.467), width: 16 Scan time: 1.350 The best scores are: opt bits E(32554) CCDS31059.1 COA6 gene_id:388753|Hs108|chr1 ( 125) 895 214.9 1.1e-56 CCDS76275.1 COA6 gene_id:388753|Hs108|chr1 ( 155) 600 146.5 4.9e-36 CCDS55690.1 COA6 gene_id:388753|Hs108|chr1 ( 79) 562 137.5 1.3e-33 >>CCDS31059.1 COA6 gene_id:388753|Hs108|chr1 (125 aa) initn: 895 init1: 895 opt: 895 Z-score: 1131.5 bits: 214.9 E(32554): 1.1e-56 Smith-Waterman score: 895; 100.0% identity (100.0% similar) in 125 aa overlap (1-125:1-125) 10 20 30 40 50 60 pF1KE6 MGPGGPLLSPSRGFLLCKTGWHSNRLLGDCGPHTPVSTALSFIAVGMAAPSMKERQVCWG :::::::::::::::::::::::::::::::::::::::::::::::::::::::::::: CCDS31 MGPGGPLLSPSRGFLLCKTGWHSNRLLGDCGPHTPVSTALSFIAVGMAAPSMKERQVCWG 10 20 30 40 50 60 70 80 90 100 110 120 pF1KE6 ARDEYWKCLDENLEDASQCKKLRSSFESSCPQQWIKYFDKRRDYLKFKEKFEAGQFEPSE :::::::::::::::::::::::::::::::::::::::::::::::::::::::::::: CCDS31 ARDEYWKCLDENLEDASQCKKLRSSFESSCPQQWIKYFDKRRDYLKFKEKFEAGQFEPSE 70 80 90 100 110 120 pF1KE6 TTAKS ::::: CCDS31 TTAKS >>CCDS76275.1 COA6 gene_id:388753|Hs108|chr1 (155 aa) initn: 600 init1: 600 opt: 600 Z-score: 760.5 bits: 146.5 E(32554): 4.9e-36 Smith-Waterman score: 600; 98.9% identity (98.9% similar) in 87 aa overlap (39-125:69-155) 10 20 30 40 50 60 pF1KE6 SPSRGFLLCKTGWHSNRLLGDCGPHTPVSTALSFIAVGMAAPSMKERQVCWGARDEYWKC : :::::::::::::::::::::::::::: CCDS76 RTRHRALHRRLVACVTVSSRRHRKEAGRGRAESFIAVGMAAPSMKERQVCWGARDEYWKC 40 50 60 70 80 90 70 80 90 100 110 120 pF1KE6 LDENLEDASQCKKLRSSFESSCPQQWIKYFDKRRDYLKFKEKFEAGQFEPSETTAKS ::::::::::::::::::::::::::::::::::::::::::::::::::::::::: CCDS76 LDENLEDASQCKKLRSSFESSCPQQWIKYFDKRRDYLKFKEKFEAGQFEPSETTAKS 100 110 120 130 140 150 >>CCDS55690.1 COA6 gene_id:388753|Hs108|chr1 (79 aa) initn: 562 init1: 562 opt: 562 Z-score: 717.0 bits: 137.5 E(32554): 1.3e-33 Smith-Waterman score: 562; 100.0% identity (100.0% similar) in 79 aa overlap (47-125:1-79) 20 30 40 50 60 70 pF1KE6 CKTGWHSNRLLGDCGPHTPVSTALSFIAVGMAAPSMKERQVCWGARDEYWKCLDENLEDA :::::::::::::::::::::::::::::: CCDS55 MAAPSMKERQVCWGARDEYWKCLDENLEDA 10 20 30 80 90 100 110 120 pF1KE6 SQCKKLRSSFESSCPQQWIKYFDKRRDYLKFKEKFEAGQFEPSETTAKS ::::::::::::::::::::::::::::::::::::::::::::::::: CCDS55 SQCKKLRSSFESSCPQQWIKYFDKRRDYLKFKEKFEAGQFEPSETTAKS 40 50 60 70 125 residues in 1 query sequences 18511270 residues in 32554 library sequences Tcomplib [36.3.4 Apr, 2011] (8 proc) start: Tue Nov 8 10:08:50 2016 done: Tue Nov 8 10:08:50 2016 Total Scan time: 1.350 Total Display time: -0.020 Function used was FASTA [36.3.4 Apr, 2011]