FASTA searches a protein or DNA sequence data bank 36.3.4 Apr, 2011 Please cite: W.R. Pearson & D.J. Lipman PNAS (1988) 85:2444-2448 Query: pF1KE5350, 306 aa 1>>>pF1KE5350 306 - 306 aa - 306 aa Library: human.CCDS.faa 18511270 residues in 32554 sequences Statistics: Expectation_n fit: rho(ln(x))= 5.3614+/-0.000743; mu= 15.7031+/- 0.045 mean_var=71.5467+/-14.033, 0's: 0 Z-trim(109.3): 11 B-trim: 0 in 0/52 Lambda= 0.151628 statistics sampled from 10775 (10777) to 10775 sequences Algorithm: FASTA (3.7 Nov 2010) [optimized] Parameters: BL50 matrix (15:-5), open/ext: -10/-2 ktup: 2, E-join: 1 (0.715), E-opt: 0.2 (0.331), width: 16 Scan time: 2.540 The best scores are: opt bits E(32554) CCDS61999.1 PKD1L2 gene_id:114780|Hs108|chr16 ( 306) 2007 447.8 4.7e-126 >>CCDS61999.1 PKD1L2 gene_id:114780|Hs108|chr16 (306 aa) initn: 2007 init1: 2007 opt: 2007 Z-score: 2376.5 bits: 447.8 E(32554): 4.7e-126 Smith-Waterman score: 2007; 99.7% identity (99.7% similar) in 306 aa overlap (1-306:1-306) 10 20 30 40 50 60 pF1KE5 MGEDSPVAMFSWYLDNTPTEQAEPLPDACRLRGFWPRSLTLLQSNTSTLLLNSSFLQSRG ::::::::::::::::::::::::: :::::::::::::::::::::::::::::::::: CCDS61 MGEDSPVAMFSWYLDNTPTEQAEPLLDACRLRGFWPRSLTLLQSNTSTLLLNSSFLQSRG 10 20 30 40 50 60 70 80 90 100 110 120 pF1KE5 EVIRIRATALTRHAYGEDTYVISTVPPREVPACTIAPEEGTVLTSFAIFCNASTALGPLE :::::::::::::::::::::::::::::::::::::::::::::::::::::::::::: CCDS61 EVIRIRATALTRHAYGEDTYVISTVPPREVPACTIAPEEGTVLTSFAIFCNASTALGPLE 70 80 90 100 110 120 130 140 150 160 170 180 pF1KE5 FCFCLESGSCLHCGPEPALPSVYLPLGEENNDFVLTVVISATNRAGDTQQTQAMAKVALG :::::::::::::::::::::::::::::::::::::::::::::::::::::::::::: CCDS61 FCFCLESGSCLHCGPEPALPSVYLPLGEENNDFVLTVVISATNRAGDTQQTQAMAKVALG 130 140 150 160 170 180 190 200 210 220 230 240 pF1KE5 DTCVEDVAFQAAVSEKIPTALQGEGGPEQLLQLAKAVSSMLNQEHESQGSGQSLSIDVRQ :::::::::::::::::::::::::::::::::::::::::::::::::::::::::::: CCDS61 DTCVEDVAFQAAVSEKIPTALQGEGGPEQLLQLAKAVSSMLNQEHESQGSGQSLSIDVRQ 190 200 210 220 230 240 250 260 270 280 290 300 pF1KE5 KVREHVLGSLSAVTTGLEDVQRVQELAEVLREVTCRSKELTPSAQGSCMGDSWEGAPPAA :::::::::::::::::::::::::::::::::::::::::::::::::::::::::::: CCDS61 KVREHVLGSLSAVTTGLEDVQRVQELAEVLREVTCRSKELTPSAQGSCMGDSWEGAPPAA 250 260 270 280 290 300 pF1KE5 HVSHAR :::::: CCDS61 HVSHAR 306 residues in 1 query sequences 18511270 residues in 32554 library sequences Tcomplib [36.3.4 Apr, 2011] (8 proc) start: Tue Nov 8 00:01:25 2016 done: Tue Nov 8 00:01:25 2016 Total Scan time: 2.540 Total Display time: -0.020 Function used was FASTA [36.3.4 Apr, 2011]