FASTA searches a protein or DNA sequence data bank 36.3.4 Apr, 2011 Please cite: W.R. Pearson & D.J. Lipman PNAS (1988) 85:2444-2448 Query: pF1KE5272, 177 aa 1>>>pF1KE5272 177 - 177 aa - 177 aa Library: human.CCDS.faa 18511270 residues in 32554 sequences Statistics: Expectation_n fit: rho(ln(x))= 5.0121+/-0.000754; mu= 14.3564+/- 0.045 mean_var=61.1366+/-12.160, 0's: 0 Z-trim(107.6): 10 B-trim: 0 in 0/50 Lambda= 0.164030 statistics sampled from 9673 (9677) to 9673 sequences Algorithm: FASTA (3.7 Nov 2010) [optimized] Parameters: BL50 matrix (15:-5), open/ext: -10/-2 ktup: 2, E-join: 1 (0.686), E-opt: 0.2 (0.297), width: 16 Scan time: 1.590 The best scores are: opt bits E(32554) CCDS1305.2 TNFSF18 gene_id:8995|Hs108|chr1 ( 199) 1217 296.0 8.9e-81 >>CCDS1305.2 TNFSF18 gene_id:8995|Hs108|chr1 (199 aa) initn: 1217 init1: 1217 opt: 1217 Z-score: 1563.6 bits: 296.0 E(32554): 8.9e-81 Smith-Waterman score: 1217; 100.0% identity (100.0% similar) in 177 aa overlap (1-177:23-199) 10 20 30 pF1KE5 MCLSHLENMPLSHSRTQGAQRSSWKLWLFCSIVMLLFL :::::::::::::::::::::::::::::::::::::: CCDS13 MTLHPSPITCEFLFSTALISPKMCLSHLENMPLSHSRTQGAQRSSWKLWLFCSIVMLLFL 10 20 30 40 50 60 40 50 60 70 80 90 pF1KE5 CSFSWLIFIFLQLETAKEPCMAKFGPLPSKWQMASSEPPCVNKVSDWKLEILQNGLYLIY :::::::::::::::::::::::::::::::::::::::::::::::::::::::::::: CCDS13 CSFSWLIFIFLQLETAKEPCMAKFGPLPSKWQMASSEPPCVNKVSDWKLEILQNGLYLIY 70 80 90 100 110 120 100 110 120 130 140 150 pF1KE5 GQVAPNANYNDVAPFEVRLYKNKDMIQTLTNKSKIQNVGGTYELHVGDTIDLIFNSEHQV :::::::::::::::::::::::::::::::::::::::::::::::::::::::::::: CCDS13 GQVAPNANYNDVAPFEVRLYKNKDMIQTLTNKSKIQNVGGTYELHVGDTIDLIFNSEHQV 130 140 150 160 170 180 160 170 pF1KE5 LKNNTYWGIILLANPQFIS ::::::::::::::::::: CCDS13 LKNNTYWGIILLANPQFIS 190 177 residues in 1 query sequences 18511270 residues in 32554 library sequences Tcomplib [36.3.4 Apr, 2011] (8 proc) start: Mon Nov 7 23:19:06 2016 done: Mon Nov 7 23:19:06 2016 Total Scan time: 1.590 Total Display time: -0.020 Function used was FASTA [36.3.4 Apr, 2011]