FASTA searches a protein or DNA sequence data bank 36.3.4 Apr, 2011 Please cite: W.R. Pearson & D.J. Lipman PNAS (1988) 85:2444-2448 Query: pF1KE6577, 71 aa 1>>>pF1KE6577 71 - 71 aa - 71 aa Library: /omim/omim.rfq.tfa 60827320 residues in 85289 sequences Statistics: Expectation_n fit: rho(ln(x))= 4.5197+/-0.000241; mu= 11.4294+/- 0.015 mean_var=51.6292+/-10.318, 0's: 0 Z-trim(122.0): 10 B-trim: 446 in 1/52 Lambda= 0.178495 statistics sampled from 39338 (39348) to 39338 sequences Algorithm: FASTA (3.7 Nov 2010) [optimized] Parameters: BL50 matrix (15:-5), open/ext: -10/-2 ktup: 2, E-join: 1 (0.842), E-opt: 0.2 (0.461), width: 16 Scan time: 2.320 The best scores are: opt bits E(85289) NP_001161407 (OMIM: 603284,607929) cerebral cavern ( 353) 441 120.4 1.3e-27 NP_113631 (OMIM: 603284,607929) cerebral cavernous ( 444) 441 120.4 1.5e-27 XP_011513864 (OMIM: 603284,607929) PREDICTED: cere ( 485) 441 120.4 1.6e-27 XP_016868160 (OMIM: 603284,607929) PREDICTED: cere ( 318) 377 103.8 1.1e-22 XP_006715849 (OMIM: 603284,607929) PREDICTED: cere ( 374) 377 103.9 1.2e-22 NP_001025006 (OMIM: 603284,607929) cerebral cavern ( 465) 377 104.0 1.4e-22 XP_011513863 (OMIM: 603284,607929) PREDICTED: cere ( 506) 377 104.0 1.5e-22 >>NP_001161407 (OMIM: 603284,607929) cerebral cavernous (353 aa) initn: 441 init1: 441 opt: 441 Z-score: 617.0 bits: 120.4 E(85289): 1.3e-27 Smith-Waterman score: 441; 100.0% identity (100.0% similar) in 68 aa overlap (1-68:1-68) 10 20 30 40 50 60 pF1KE6 MEEEGKKGKKPGIVSPFKRVFLKGEKSRDKKAHEKVTERRPLHTVVLSLPERVEPDRLLS :::::::::::::::::::::::::::::::::::::::::::::::::::::::::::: NP_001 MEEEGKKGKKPGIVSPFKRVFLKGEKSRDKKAHEKVTERRPLHTVVLSLPERVEPDRLLS 10 20 30 40 50 60 70 pF1KE6 DYIEKEVKGSH :::::::: NP_001 DYIEKEVKYLGQLTSIPGYLNPSSRTEILHFIDNAKRAHQLPGHLTQEHDAVLSLSAYNV 70 80 90 100 110 120 >>NP_113631 (OMIM: 603284,607929) cerebral cavernous mal (444 aa) initn: 441 init1: 441 opt: 441 Z-score: 615.5 bits: 120.4 E(85289): 1.5e-27 Smith-Waterman score: 441; 100.0% identity (100.0% similar) in 68 aa overlap (1-68:1-68) 10 20 30 40 50 60 pF1KE6 MEEEGKKGKKPGIVSPFKRVFLKGEKSRDKKAHEKVTERRPLHTVVLSLPERVEPDRLLS :::::::::::::::::::::::::::::::::::::::::::::::::::::::::::: NP_113 MEEEGKKGKKPGIVSPFKRVFLKGEKSRDKKAHEKVTERRPLHTVVLSLPERVEPDRLLS 10 20 30 40 50 60 70 pF1KE6 DYIEKEVKGSH :::::::: NP_113 DYIEKEVKYLGQLTSIPGYLNPSSRTEILHFIDNAKRAHQLPGHLTQEHDAVLSLSAYNV 70 80 90 100 110 120 >>XP_011513864 (OMIM: 603284,607929) PREDICTED: cerebral (485 aa) initn: 441 init1: 441 opt: 441 Z-score: 615.0 bits: 120.4 E(85289): 1.6e-27 Smith-Waterman score: 441; 100.0% identity (100.0% similar) in 68 aa overlap (1-68:1-68) 10 20 30 40 50 60 pF1KE6 MEEEGKKGKKPGIVSPFKRVFLKGEKSRDKKAHEKVTERRPLHTVVLSLPERVEPDRLLS :::::::::::::::::::::::::::::::::::::::::::::::::::::::::::: XP_011 MEEEGKKGKKPGIVSPFKRVFLKGEKSRDKKAHEKVTERRPLHTVVLSLPERVEPDRLLS 10 20 30 40 50 60 70 pF1KE6 DYIEKEVKGSH :::::::: XP_011 DYIEKEVKYLGQLTSIPGYLNPSSRTEILHFIDNAKRAHQLPGHLTQEHDAVLSLSAYNV 70 80 90 100 110 120 >>XP_016868160 (OMIM: 603284,607929) PREDICTED: cerebral (318 aa) initn: 377 init1: 377 opt: 377 Z-score: 528.6 bits: 103.8 E(85289): 1.1e-22 Smith-Waterman score: 377; 98.3% identity (100.0% similar) in 59 aa overlap (10-68:31-89) 10 20 30 pF1KE6 MEEEGKKGKKPGIVSPFKRVFLKGEKSRDKKAHEKVTER .::::::::::::::::::::::::::::: XP_016 MHSSCRQRRNQNLSKEIPQTEFHTGYSMENEPGIVSPFKRVFLKGEKSRDKKAHEKVTER 10 20 30 40 50 60 40 50 60 70 pF1KE6 RPLHTVVLSLPERVEPDRLLSDYIEKEVKGSH ::::::::::::::::::::::::::::: XP_016 RPLHTVVLSLPERVEPDRLLSDYIEKEVKYLGQLTSIPGYLNPSSRTEILHFIDNAKRAH 70 80 90 100 110 120 >>XP_006715849 (OMIM: 603284,607929) PREDICTED: cerebral (374 aa) initn: 377 init1: 377 opt: 377 Z-score: 527.5 bits: 103.9 E(85289): 1.2e-22 Smith-Waterman score: 377; 98.3% identity (100.0% similar) in 59 aa overlap (10-68:31-89) 10 20 30 pF1KE6 MEEEGKKGKKPGIVSPFKRVFLKGEKSRDKKAHEKVTER .::::::::::::::::::::::::::::: XP_006 MHSSCRQRRNQNLSKEIPQTEFHTGYSMENEPGIVSPFKRVFLKGEKSRDKKAHEKVTER 10 20 30 40 50 60 40 50 60 70 pF1KE6 RPLHTVVLSLPERVEPDRLLSDYIEKEVKGSH ::::::::::::::::::::::::::::: XP_006 RPLHTVVLSLPERVEPDRLLSDYIEKEVKYLGQLTSIPGYLNPSSRTEILHFIDNAKRAH 70 80 90 100 110 120 >>NP_001025006 (OMIM: 603284,607929) cerebral cavernous (465 aa) initn: 377 init1: 377 opt: 377 Z-score: 526.2 bits: 104.0 E(85289): 1.4e-22 Smith-Waterman score: 377; 98.3% identity (100.0% similar) in 59 aa overlap (10-68:31-89) 10 20 30 pF1KE6 MEEEGKKGKKPGIVSPFKRVFLKGEKSRDKKAHEKVTER .::::::::::::::::::::::::::::: NP_001 MHSSCRQRRNQNLSKEIPQTEFHTGYSMENEPGIVSPFKRVFLKGEKSRDKKAHEKVTER 10 20 30 40 50 60 40 50 60 70 pF1KE6 RPLHTVVLSLPERVEPDRLLSDYIEKEVKGSH ::::::::::::::::::::::::::::: NP_001 RPLHTVVLSLPERVEPDRLLSDYIEKEVKYLGQLTSIPGYLNPSSRTEILHFIDNAKRAH 70 80 90 100 110 120 >>XP_011513863 (OMIM: 603284,607929) PREDICTED: cerebral (506 aa) initn: 377 init1: 377 opt: 377 Z-score: 525.6 bits: 104.0 E(85289): 1.5e-22 Smith-Waterman score: 377; 98.3% identity (100.0% similar) in 59 aa overlap (10-68:31-89) 10 20 30 pF1KE6 MEEEGKKGKKPGIVSPFKRVFLKGEKSRDKKAHEKVTER .::::::::::::::::::::::::::::: XP_011 MHSSCRQRRNQNLSKEIPQTEFHTGYSMENEPGIVSPFKRVFLKGEKSRDKKAHEKVTER 10 20 30 40 50 60 40 50 60 70 pF1KE6 RPLHTVVLSLPERVEPDRLLSDYIEKEVKGSH ::::::::::::::::::::::::::::: XP_011 RPLHTVVLSLPERVEPDRLLSDYIEKEVKYLGQLTSIPGYLNPSSRTEILHFIDNAKRAH 70 80 90 100 110 120 71 residues in 1 query sequences 60827320 residues in 85289 library sequences Tcomplib [36.3.4 Apr, 2011] (8 proc) start: Tue Nov 8 14:32:46 2016 done: Tue Nov 8 14:32:46 2016 Total Scan time: 2.320 Total Display time: -0.020 Function used was FASTA [36.3.4 Apr, 2011]