FASTA searches a protein or DNA sequence data bank 36.3.4 Apr, 2011 Please cite: W.R. Pearson & D.J. Lipman PNAS (1988) 85:2444-2448 Query: pF1KE6577, 71 aa 1>>>pF1KE6577 71 - 71 aa - 71 aa Library: human.CCDS.faa 18511270 residues in 32554 sequences Statistics: Expectation_n fit: rho(ln(x))= 4.7653+/-0.000461; mu= 9.9350+/- 0.028 mean_var=50.5627+/- 9.925, 0's: 0 Z-trim(114.9): 5 B-trim: 0 in 0/51 Lambda= 0.180368 statistics sampled from 15479 (15484) to 15479 sequences Algorithm: FASTA (3.7 Nov 2010) [optimized] Parameters: BL50 matrix (15:-5), open/ext: -10/-2 ktup: 2, E-join: 1 (0.851), E-opt: 0.2 (0.476), width: 16 Scan time: 1.140 The best scores are: opt bits E(32554) CCDS55108.1 CCM2 gene_id:83605|Hs108|chr7 ( 353) 441 121.4 2.3e-28 CCDS5500.1 CCM2 gene_id:83605|Hs108|chr7 ( 444) 441 121.5 2.8e-28 CCDS34630.1 CCM2 gene_id:83605|Hs108|chr7 ( 465) 377 104.8 3e-23 >>CCDS55108.1 CCM2 gene_id:83605|Hs108|chr7 (353 aa) initn: 441 init1: 441 opt: 441 Z-score: 622.7 bits: 121.4 E(32554): 2.3e-28 Smith-Waterman score: 441; 100.0% identity (100.0% similar) in 68 aa overlap (1-68:1-68) 10 20 30 40 50 60 pF1KE6 MEEEGKKGKKPGIVSPFKRVFLKGEKSRDKKAHEKVTERRPLHTVVLSLPERVEPDRLLS :::::::::::::::::::::::::::::::::::::::::::::::::::::::::::: CCDS55 MEEEGKKGKKPGIVSPFKRVFLKGEKSRDKKAHEKVTERRPLHTVVLSLPERVEPDRLLS 10 20 30 40 50 60 70 pF1KE6 DYIEKEVKGSH :::::::: CCDS55 DYIEKEVKYLGQLTSIPGYLNPSSRTEILHFIDNAKRAHQLPGHLTQEHDAVLSLSAYNV 70 80 90 100 110 120 >>CCDS5500.1 CCM2 gene_id:83605|Hs108|chr7 (444 aa) initn: 441 init1: 441 opt: 441 Z-score: 621.2 bits: 121.5 E(32554): 2.8e-28 Smith-Waterman score: 441; 100.0% identity (100.0% similar) in 68 aa overlap (1-68:1-68) 10 20 30 40 50 60 pF1KE6 MEEEGKKGKKPGIVSPFKRVFLKGEKSRDKKAHEKVTERRPLHTVVLSLPERVEPDRLLS :::::::::::::::::::::::::::::::::::::::::::::::::::::::::::: CCDS55 MEEEGKKGKKPGIVSPFKRVFLKGEKSRDKKAHEKVTERRPLHTVVLSLPERVEPDRLLS 10 20 30 40 50 60 70 pF1KE6 DYIEKEVKGSH :::::::: CCDS55 DYIEKEVKYLGQLTSIPGYLNPSSRTEILHFIDNAKRAHQLPGHLTQEHDAVLSLSAYNV 70 80 90 100 110 120 >>CCDS34630.1 CCM2 gene_id:83605|Hs108|chr7 (465 aa) initn: 377 init1: 377 opt: 377 Z-score: 530.8 bits: 104.8 E(32554): 3e-23 Smith-Waterman score: 377; 98.3% identity (100.0% similar) in 59 aa overlap (10-68:31-89) 10 20 30 pF1KE6 MEEEGKKGKKPGIVSPFKRVFLKGEKSRDKKAHEKVTER .::::::::::::::::::::::::::::: CCDS34 MHSSCRQRRNQNLSKEIPQTEFHTGYSMENEPGIVSPFKRVFLKGEKSRDKKAHEKVTER 10 20 30 40 50 60 40 50 60 70 pF1KE6 RPLHTVVLSLPERVEPDRLLSDYIEKEVKGSH ::::::::::::::::::::::::::::: CCDS34 RPLHTVVLSLPERVEPDRLLSDYIEKEVKYLGQLTSIPGYLNPSSRTEILHFIDNAKRAH 70 80 90 100 110 120 71 residues in 1 query sequences 18511270 residues in 32554 library sequences Tcomplib [36.3.4 Apr, 2011] (8 proc) start: Tue Nov 8 14:32:45 2016 done: Tue Nov 8 14:32:45 2016 Total Scan time: 1.140 Total Display time: -0.010 Function used was FASTA [36.3.4 Apr, 2011]