FASTA searches a protein or DNA sequence data bank 36.3.4 Apr, 2011 Please cite: W.R. Pearson & D.J. Lipman PNAS (1988) 85:2444-2448 Query: pF1KE9621, 556 aa 1>>>pF1KE9621 556 - 556 aa - 556 aa Library: /omim/omim.rfq.tfa 60827320 residues in 85289 sequences Statistics: Expectation_n fit: rho(ln(x))= 6.7205+/-0.000472; mu= 10.6851+/- 0.029 mean_var=77.7632+/-15.625, 0's: 0 Z-trim(109.7): 25 B-trim: 340 in 1/49 Lambda= 0.145441 statistics sampled from 17862 (17876) to 17862 sequences Algorithm: FASTA (3.7 Nov 2010) [optimized] Parameters: BL50 matrix (15:-5), open/ext: -10/-2 ktup: 2, E-join: 1 (0.571), E-opt: 0.2 (0.21), width: 16 Scan time: 8.880 The best scores are: opt bits E(85289) NP_006256 (OMIM: 606462,614701) double-strand-brea ( 631) 818 181.8 5.6e-45 >>NP_006256 (OMIM: 606462,614701) double-strand-break re (631 aa) initn: 1379 init1: 676 opt: 818 Z-score: 928.5 bits: 181.8 E(85289): 5.6e-45 Smith-Waterman score: 1232; 40.5% identity (65.8% similar) in 590 aa overlap (1-513:1-588) 10 20 30 40 50 60 pF1KE9 MFYTHVLMSKRGPLAKIWLAAHWEKKLTKAHVFECNLEITIEKILSPKVKIALRTSGHLL :::.: ..:::::::::::::::.:::::::::::::: ..:.:.:::::.::::::::: NP_006 MFYAHFVLSKRGPLAKIWLAAHWDKKLTKAHVFECNLESSVESIISPKVKMALRTSGHLL 10 20 30 40 50 60 70 80 90 100 110 120 pF1KE9 LGVVRIYNRKAKYLLADCSEAFLKMKMTFCPGLVDLPKENFEASYNAITLPEEFHDFDTQ :::::::.::::::::::.:::.:.::.: ::.::::.:: ::.:::::::::::::: NP_006 LGVVRIYHRKAKYLLADCNEAFIKIKMAFRPGVVDLPEENREAAYNAITLPEEFHDFDQP 70 80 90 100 110 120 130 140 150 160 170 pF1KE9 --NMNAIDVSEHFTQNQSRPEEITLRENFDNDLIFQAESFGE----ESEILRRHSFF-DD ... :::...:. :::: ::::.::. : :.: ..::. . ::.:. : : :: NP_006 LPDLDDIDVAQQFSLNQSRVEEITMREEVGNISILQENDFGDFGMDDREIMREGSAFEDD 130 140 150 160 170 180 180 190 200 210 220 pF1KE9 NILLNS--SGPLIE-HSSGSLTGER--SLFYDS---GDGFGDEGAAGEMIDNLLQDDQNI ..:... :. :.: ..: : .:. : :.. :.::. . .: . :.:...... NP_006 DMLVSTTTSNLLLESEQSTSNLNEKINHLEYEDQYKDDNFGEGNDGGILDDKLISNNDGG 190 200 210 220 230 240 230 240 250 260 270 pF1KE9 LLEDMHLNRE--ISLPSEPPNSLAVE--------PDNSECI--CVPENEKMNETILLSTE ...: : . :: .: .. : ::. . . : ..: :. .: NP_006 IFDDPPALSEAGVMLPEQPAHDDMDEDDNVSMGGPDSPDSVDPVEPMPTMTDQTTLVPNE 250 260 270 280 290 300 280 290 300 310 320 330 pF1KE9 EEGFTLDPIDISDIAEKRKGKKRRLLIDPIKELSSKVIHKQLTSFADTLMVLELAPPTQR ::.:.:.::::. . : . .::.:..: .:::.::.:. ::....: . .:.:::::.. NP_006 EEAFALEPIDIT-VKETKAKRKRKLIVDSVKELDSKTIRAQLSDYSDIVTTLDLAPPTKK 310 320 330 340 350 340 350 360 370 pF1KE9 LMMWKKRGGVHTLLSTAAQDLIHAELKMLFTKCF---LSSGFKLGRK------------- :::::. :::. :.: :: : . .: :::.:. . .. :: NP_006 LMMWKETGGVEKLFSLPAQPLWNNRLLKLFTRCLTPLVPEDLRKRRKGGEADNLDEFLKE 360 370 380 390 400 410 380 390 400 410 420 pF1KE9 ----MIQKESVREEVGNQNIVETSMMQEPNYQQE--LSKPQTWKDVIG-------GSQHS . .:. ... ...... ...::. :: . .: : . : ... NP_006 FENPEVPREDQQQQHQQRDVIDEPIIEEPSRLQESVMEASRTNIDESAMPPPPPQGVKRK 420 430 440 450 460 470 430 440 450 460 470 pF1KE9 SHEDTNKNINSEQDIVEM----VSLAAEESSLMNDLFAQEIEYSPV-----ELESLSNEE . . . . :.. .: : : :: . .:. :.: : : :. ..:: NP_006 AGQIDPEPVMPPQQVEQMEIPPVELPPEEPPNICQLIP-ELELLPEKEKEKEKEKEDDEE 480 490 500 510 520 530 480 490 500 510 520 pF1KE9 -----------NIETERWNGRILQMLNRL-RESNKMGMQSFSLMKLCRNSDRKQAAAKFY . : .::: : :::. : : : : .:.::..::::. NP_006 EEDEDASGGDQDQEERRWNKRTQQMLHGLQRALAKTGAESISLLELCRNTNRKQAAAKFY 540 550 560 570 580 590 530 540 550 pF1KE9 SFLVLKKQLAIELSQSAPYADIIATMGPMFYNI NP_006 SFLVLKKQQAIELTQEEPYSDIIATPGPRFHII 600 610 620 630 >-- initn: 223 init1: 202 opt: 204 Z-score: 232.3 bits: 53.0 E(85289): 3.4e-06 Smith-Waterman score: 204; 76.7% identity (86.0% similar) in 43 aa overlap (514-556:589-631) 490 500 510 520 530 540 pF1KE9 GRILQMLNRLRESNKMGMQSFSLMKLCRNSDRKQAAAKFYSFLVLKKQLAIELSQSAPYA .::::::::::::::::: ::::.: ::. NP_006 RTQQMLHGLQRALAKTGAESISLLELCRNTNRKQAAAKFYSFLVLKKQQAIELTQEEPYS 560 570 580 590 600 610 550 pF1KE9 DIIATMGPMFYNI ::::: :: :. : NP_006 DIIATPGPRFHII 620 630 556 residues in 1 query sequences 60827320 residues in 85289 library sequences Tcomplib [36.3.4 Apr, 2011] (8 proc) start: Mon Nov 7 18:44:56 2016 done: Mon Nov 7 18:44:57 2016 Total Scan time: 8.880 Total Display time: -0.020 Function used was FASTA [36.3.4 Apr, 2011]