FASTA searches a protein or DNA sequence data bank 36.3.4 Apr, 2011 Please cite: W.R. Pearson & D.J. Lipman PNAS (1988) 85:2444-2448 Query: pF1KE4052, 232 aa 1>>>pF1KE4052 232 - 232 aa - 232 aa Library: human.CCDS.faa 18511270 residues in 32554 sequences Statistics: Expectation_n fit: rho(ln(x))= 6.6430+/-0.000739; mu= 9.9534+/- 0.045 mean_var=123.7656+/-24.669, 0's: 0 Z-trim(113.1): 9 B-trim: 0 in 0/52 Lambda= 0.115285 statistics sampled from 13801 (13805) to 13801 sequences Algorithm: FASTA (3.7 Nov 2010) [optimized] Parameters: BL50 matrix (15:-5), open/ext: -10/-2 ktup: 2, E-join: 1 (0.786), E-opt: 0.2 (0.424), width: 16 Scan time: 2.260 The best scores are: opt bits E(32554) CCDS3345.1 RNF212 gene_id:285498|Hs108|chr4 ( 232) 1605 277.1 6.9e-75 CCDS46996.1 RNF212 gene_id:285498|Hs108|chr4 ( 297) 1318 229.4 2e-60 CCDS54704.1 RNF212 gene_id:285498|Hs108|chr4 ( 273) 612 112.0 4.1e-25 >>CCDS3345.1 RNF212 gene_id:285498|Hs108|chr4 (232 aa) initn: 1605 init1: 1605 opt: 1605 Z-score: 1457.9 bits: 277.1 E(32554): 6.9e-75 Smith-Waterman score: 1605; 100.0% identity (100.0% similar) in 232 aa overlap (1-232:1-232) 10 20 30 40 50 60 pF1KE4 MANWVFCNRCFQPPHRTSCFSLTNCGHVYCDACLGKGKKNECLICKAPCRTVLLSKHTDA :::::::::::::::::::::::::::::::::::::::::::::::::::::::::::: CCDS33 MANWVFCNRCFQPPHRTSCFSLTNCGHVYCDACLGKGKKNECLICKAPCRTVLLSKHTDA 10 20 30 40 50 60 70 80 90 100 110 120 pF1KE4 DIQAFFMSIDSLCKKYSRETSQILEFQEKHRKRLLAFYREKISRLEESLRKSVLQIEQLQ :::::::::::::::::::::::::::::::::::::::::::::::::::::::::::: CCDS33 DIQAFFMSIDSLCKKYSRETSQILEFQEKHRKRLLAFYREKISRLEESLRKSVLQIEQLQ 70 80 90 100 110 120 130 140 150 160 170 180 pF1KE4 SMRSSQQTAFSTIKSSVSTKPHGCLLPPHSSAPDRLESMEVDLSPSPIRKSEIAAGPARI :::::::::::::::::::::::::::::::::::::::::::::::::::::::::::: CCDS33 SMRSSQQTAFSTIKSSVSTKPHGCLLPPHSSAPDRLESMEVDLSPSPIRKSEIAAGPARI 130 140 150 160 170 180 190 200 210 220 230 pF1KE4 SMISPPQDGRMAPCARRVCHFQRFTMFLHRRLSSLAAPPSVQFWKARGTHQL :::::::::::::::::::::::::::::::::::::::::::::::::::: CCDS33 SMISPPQDGRMAPCARRVCHFQRFTMFLHRRLSSLAAPPSVQFWKARGTHQL 190 200 210 220 230 >>CCDS46996.1 RNF212 gene_id:285498|Hs108|chr4 (297 aa) initn: 1336 init1: 1318 opt: 1318 Z-score: 1198.5 bits: 229.4 E(32554): 2e-60 Smith-Waterman score: 1318; 99.5% identity (100.0% similar) in 193 aa overlap (1-193:1-193) 10 20 30 40 50 60 pF1KE4 MANWVFCNRCFQPPHRTSCFSLTNCGHVYCDACLGKGKKNECLICKAPCRTVLLSKHTDA :::::::::::::::::::::::::::::::::::::::::::::::::::::::::::: CCDS46 MANWVFCNRCFQPPHRTSCFSLTNCGHVYCDACLGKGKKNECLICKAPCRTVLLSKHTDA 10 20 30 40 50 60 70 80 90 100 110 120 pF1KE4 DIQAFFMSIDSLCKKYSRETSQILEFQEKHRKRLLAFYREKISRLEESLRKSVLQIEQLQ :::::::::::::::::::::::::::::::::::::::::::::::::::::::::::: CCDS46 DIQAFFMSIDSLCKKYSRETSQILEFQEKHRKRLLAFYREKISRLEESLRKSVLQIEQLQ 70 80 90 100 110 120 130 140 150 160 170 180 pF1KE4 SMRSSQQTAFSTIKSSVSTKPHGCLLPPHSSAPDRLESMEVDLSPSPIRKSEIAAGPARI :::::::::::::::::::::::::::::::::::::::::::::::::::::::::::: CCDS46 SMRSSQQTAFSTIKSSVSTKPHGCLLPPHSSAPDRLESMEVDLSPSPIRKSEIAAGPARI 130 140 150 160 170 180 190 200 210 220 230 pF1KE4 SMISPPQDGRMAPCARRVCHFQRFTMFLHRRLSSLAAPPSVQFWKARGTHQL :::::::::::.: CCDS46 SMISPPQDGRMGPHLTASFCFIPWLTLSKPPVPGECVISRGSPCFCIDVCPHWLLLLAFS 190 200 210 220 230 240 >>CCDS54704.1 RNF212 gene_id:285498|Hs108|chr4 (273 aa) initn: 612 init1: 612 opt: 612 Z-score: 564.4 bits: 112.0 E(32554): 4.1e-25 Smith-Waterman score: 612; 96.5% identity (98.8% similar) in 86 aa overlap (1-86:1-86) 10 20 30 40 50 60 pF1KE4 MANWVFCNRCFQPPHRTSCFSLTNCGHVYCDACLGKGKKNECLICKAPCRTVLLSKHTDA :::::::::::::::::::::::::::::::::::::::::::::::::::::::::::: CCDS54 MANWVFCNRCFQPPHRTSCFSLTNCGHVYCDACLGKGKKNECLICKAPCRTVLLSKHTDA 10 20 30 40 50 60 70 80 90 100 110 120 pF1KE4 DIQAFFMSIDSLCKKYSRETSQILEFQEKHRKRLLAFYREKISRLEESLRKSVLQIEQLQ :::::::::::::::::::::: :.. CCDS54 DIQAFFMSIDSLCKKYSRETSQYLRLSRGCCRLKLCPATSSKEVPRGSTHGSQAAARDPQ 70 80 90 100 110 120 232 residues in 1 query sequences 18511270 residues in 32554 library sequences Tcomplib [36.3.4 Apr, 2011] (8 proc) start: Mon Nov 7 17:44:01 2016 done: Mon Nov 7 17:44:01 2016 Total Scan time: 2.260 Total Display time: -0.020 Function used was FASTA [36.3.4 Apr, 2011]