FASTA searches a protein or DNA sequence data bank 36.3.4 Apr, 2011 Please cite: W.R. Pearson & D.J. Lipman PNAS (1988) 85:2444-2448 Query: pF1KE3237, 552 aa 1>>>pF1KE3237 552 - 552 aa - 552 aa Library: human.CCDS.faa 18511270 residues in 32554 sequences Statistics: Expectation_n fit: rho(ln(x))= 6.5860+/-0.00116; mu= 12.8840+/- 0.070 mean_var=106.1680+/-21.544, 0's: 0 Z-trim(103.7): 16 B-trim: 0 in 0/50 Lambda= 0.124474 statistics sampled from 7550 (7554) to 7550 sequences Algorithm: FASTA (3.7 Nov 2010) [optimized] Parameters: BL50 matrix (15:-5), open/ext: -10/-2 ktup: 2, E-join: 1 (0.595), E-opt: 0.2 (0.232), width: 16 Scan time: 3.110 The best scores are: opt bits E(32554) CCDS4089.1 RIOK2 gene_id:55781|Hs108|chr5 ( 552) 3646 666.1 3e-191 CCDS54884.1 RIOK2 gene_id:55781|Hs108|chr5 ( 474) 3103 568.6 6e-162 >>CCDS4089.1 RIOK2 gene_id:55781|Hs108|chr5 (552 aa) initn: 3646 init1: 3646 opt: 3646 Z-score: 3547.0 bits: 666.1 E(32554): 3e-191 Smith-Waterman score: 3646; 100.0% identity (100.0% similar) in 552 aa overlap (1-552:1-552) 10 20 30 40 50 60 pF1KE3 MGKVNVAKLRYMSRDDFRVLTAVEMGMKNHEIVPGSLIASIASLKHGGCNKVLRELVKHK :::::::::::::::::::::::::::::::::::::::::::::::::::::::::::: CCDS40 MGKVNVAKLRYMSRDDFRVLTAVEMGMKNHEIVPGSLIASIASLKHGGCNKVLRELVKHK 10 20 30 40 50 60 70 80 90 100 110 120 pF1KE3 LIAWERTKTVQGYRLTNAGYDYLALKTLSSRQVVESVGNQMGVGKESDIYIVANEEGQQF :::::::::::::::::::::::::::::::::::::::::::::::::::::::::::: CCDS40 LIAWERTKTVQGYRLTNAGYDYLALKTLSSRQVVESVGNQMGVGKESDIYIVANEEGQQF 70 80 90 100 110 120 130 140 150 160 170 180 pF1KE3 ALKLHRLGRTSFRNLKNKRDYHKHRHNVSWLYLSRLSAMKEFAYMKALYERKFPVPKPID :::::::::::::::::::::::::::::::::::::::::::::::::::::::::::: CCDS40 ALKLHRLGRTSFRNLKNKRDYHKHRHNVSWLYLSRLSAMKEFAYMKALYERKFPVPKPID 130 140 150 160 170 180 190 200 210 220 230 240 pF1KE3 YNRHAVVMELINGYPLCQIHHVEDPASVYDEAMELIVKLANHGLIHGDFNEFNLILDESD :::::::::::::::::::::::::::::::::::::::::::::::::::::::::::: CCDS40 YNRHAVVMELINGYPLCQIHHVEDPASVYDEAMELIVKLANHGLIHGDFNEFNLILDESD 190 200 210 220 230 240 250 260 270 280 290 300 pF1KE3 HITMIDFPQMVSTSHPNAEWYFDRDVKCIKDFFMKRFSYESELFPTFKDIRREDTLDVEV :::::::::::::::::::::::::::::::::::::::::::::::::::::::::::: CCDS40 HITMIDFPQMVSTSHPNAEWYFDRDVKCIKDFFMKRFSYESELFPTFKDIRREDTLDVEV 250 260 270 280 290 300 310 320 330 340 350 360 pF1KE3 SASGYTKEMQADDELLHPLGPDDKNIETKEGSEFSFSDGEVAEKAEVYGSENESERNCLE :::::::::::::::::::::::::::::::::::::::::::::::::::::::::::: CCDS40 SASGYTKEMQADDELLHPLGPDDKNIETKEGSEFSFSDGEVAEKAEVYGSENESERNCLE 310 320 330 340 350 360 370 380 390 400 410 420 pF1KE3 ESEGCYCRSSGDPEQIKEDSLSEESADARSFEMTEFNQALEEIKGQVVENNSVTEFSEEK :::::::::::::::::::::::::::::::::::::::::::::::::::::::::::: CCDS40 ESEGCYCRSSGDPEQIKEDSLSEESADARSFEMTEFNQALEEIKGQVVENNSVTEFSEEK 370 380 390 400 410 420 430 440 450 460 470 480 pF1KE3 NRTENYNRQDGQRVQGGVPAGSDEYEDECPHLIALSSLNREFRPFRDEENVGAMNQYRTR :::::::::::::::::::::::::::::::::::::::::::::::::::::::::::: CCDS40 NRTENYNRQDGQRVQGGVPAGSDEYEDECPHLIALSSLNREFRPFRDEENVGAMNQYRTR 430 440 450 460 470 480 490 500 510 520 530 540 pF1KE3 TLSITSSGSAVSCSTIPPELVKQKVKRQLTKQQKSAVRRRLQKGEANIFTKQRRENMQNI :::::::::::::::::::::::::::::::::::::::::::::::::::::::::::: CCDS40 TLSITSSGSAVSCSTIPPELVKQKVKRQLTKQQKSAVRRRLQKGEANIFTKQRRENMQNI 490 500 510 520 530 540 550 pF1KE3 KSSLEAASFWGE :::::::::::: CCDS40 KSSLEAASFWGE 550 >>CCDS54884.1 RIOK2 gene_id:55781|Hs108|chr5 (474 aa) initn: 3103 init1: 3103 opt: 3103 Z-score: 3021.0 bits: 568.6 E(32554): 6e-162 Smith-Waterman score: 3103; 100.0% identity (100.0% similar) in 466 aa overlap (1-466:1-466) 10 20 30 40 50 60 pF1KE3 MGKVNVAKLRYMSRDDFRVLTAVEMGMKNHEIVPGSLIASIASLKHGGCNKVLRELVKHK :::::::::::::::::::::::::::::::::::::::::::::::::::::::::::: CCDS54 MGKVNVAKLRYMSRDDFRVLTAVEMGMKNHEIVPGSLIASIASLKHGGCNKVLRELVKHK 10 20 30 40 50 60 70 80 90 100 110 120 pF1KE3 LIAWERTKTVQGYRLTNAGYDYLALKTLSSRQVVESVGNQMGVGKESDIYIVANEEGQQF :::::::::::::::::::::::::::::::::::::::::::::::::::::::::::: CCDS54 LIAWERTKTVQGYRLTNAGYDYLALKTLSSRQVVESVGNQMGVGKESDIYIVANEEGQQF 70 80 90 100 110 120 130 140 150 160 170 180 pF1KE3 ALKLHRLGRTSFRNLKNKRDYHKHRHNVSWLYLSRLSAMKEFAYMKALYERKFPVPKPID :::::::::::::::::::::::::::::::::::::::::::::::::::::::::::: CCDS54 ALKLHRLGRTSFRNLKNKRDYHKHRHNVSWLYLSRLSAMKEFAYMKALYERKFPVPKPID 130 140 150 160 170 180 190 200 210 220 230 240 pF1KE3 YNRHAVVMELINGYPLCQIHHVEDPASVYDEAMELIVKLANHGLIHGDFNEFNLILDESD :::::::::::::::::::::::::::::::::::::::::::::::::::::::::::: CCDS54 YNRHAVVMELINGYPLCQIHHVEDPASVYDEAMELIVKLANHGLIHGDFNEFNLILDESD 190 200 210 220 230 240 250 260 270 280 290 300 pF1KE3 HITMIDFPQMVSTSHPNAEWYFDRDVKCIKDFFMKRFSYESELFPTFKDIRREDTLDVEV :::::::::::::::::::::::::::::::::::::::::::::::::::::::::::: CCDS54 HITMIDFPQMVSTSHPNAEWYFDRDVKCIKDFFMKRFSYESELFPTFKDIRREDTLDVEV 250 260 270 280 290 300 310 320 330 340 350 360 pF1KE3 SASGYTKEMQADDELLHPLGPDDKNIETKEGSEFSFSDGEVAEKAEVYGSENESERNCLE :::::::::::::::::::::::::::::::::::::::::::::::::::::::::::: CCDS54 SASGYTKEMQADDELLHPLGPDDKNIETKEGSEFSFSDGEVAEKAEVYGSENESERNCLE 310 320 330 340 350 360 370 380 390 400 410 420 pF1KE3 ESEGCYCRSSGDPEQIKEDSLSEESADARSFEMTEFNQALEEIKGQVVENNSVTEFSEEK :::::::::::::::::::::::::::::::::::::::::::::::::::::::::::: CCDS54 ESEGCYCRSSGDPEQIKEDSLSEESADARSFEMTEFNQALEEIKGQVVENNSVTEFSEEK 370 380 390 400 410 420 430 440 450 460 470 480 pF1KE3 NRTENYNRQDGQRVQGGVPAGSDEYEDECPHLIALSSLNREFRPFRDEENVGAMNQYRTR :::::::::::::::::::::::::::::::::::::::::::::: CCDS54 NRTENYNRQDGQRVQGGVPAGSDEYEDECPHLIALSSLNREFRPFRYRLLSIAF 430 440 450 460 470 490 500 510 520 530 540 pF1KE3 TLSITSSGSAVSCSTIPPELVKQKVKRQLTKQQKSAVRRRLQKGEANIFTKQRRENMQNI 552 residues in 1 query sequences 18511270 residues in 32554 library sequences Tcomplib [36.3.4 Apr, 2011] (8 proc) start: Mon Nov 7 17:11:28 2016 done: Mon Nov 7 17:11:28 2016 Total Scan time: 3.110 Total Display time: 0.000 Function used was FASTA [36.3.4 Apr, 2011]