FASTA searches a protein or DNA sequence data bank 36.3.4 Apr, 2011 Please cite: W.R. Pearson & D.J. Lipman PNAS (1988) 85:2444-2448 Query: pF1KB7634, 375 aa 1>>>pF1KB7634 375 - 375 aa - 375 aa Library: /omim/omim.rfq.tfa 60827320 residues in 85289 sequences Statistics: Expectation_n fit: rho(ln(x))= 8.6660+/-0.000311; mu= 2.0448+/- 0.020 mean_var=176.7659+/-36.088, 0's: 0 Z-trim(121.7): 6 B-trim: 127 in 1/57 Lambda= 0.096466 statistics sampled from 38707 (38719) to 38707 sequences Algorithm: FASTA (3.7 Nov 2010) [optimized] Parameters: BL50 matrix (15:-5), open/ext: -10/-2 ktup: 2, E-join: 1 (0.775), E-opt: 0.2 (0.454), width: 16 Scan time: 9.600 The best scores are: opt bits E(85289) NP_950248 (OMIM: 608964) TATA box-binding protein- ( 375) 2476 356.2 7e-98 NP_003185 (OMIM: 168600,600075,607136) TATA-box-bi ( 339) 1234 183.4 6.9e-46 NP_001165556 (OMIM: 168600,600075,607136) TATA-box ( 319) 1217 181.0 3.4e-45 NP_001240605 (OMIM: 605521) TATA box-binding prote ( 186) 451 74.2 2.7e-13 NP_004856 (OMIM: 605521) TATA box-binding protein- ( 186) 451 74.2 2.7e-13 XP_016867002 (OMIM: 605521) PREDICTED: TATA box-bi ( 186) 451 74.2 2.7e-13 >>NP_950248 (OMIM: 608964) TATA box-binding protein-like (375 aa) initn: 2476 init1: 2476 opt: 2476 Z-score: 1878.3 bits: 356.2 E(85289): 7e-98 Smith-Waterman score: 2476; 99.7% identity (99.7% similar) in 375 aa overlap (1-375:1-375) 10 20 30 40 50 60 pF1KB7 MASAPWPERVPRLLAPRLPSYPPPPPTVGLPSMEQEETYLELYLDQCAAQDGLAPPRSPL :::::::::::::::::::::::::::::: ::::::::::::::::::::::::::::: NP_950 MASAPWPERVPRLLAPRLPSYPPPPPTVGLRSMEQEETYLELYLDQCAAQDGLAPPRSPL 10 20 30 40 50 60 70 80 90 100 110 120 pF1KB7 FSPVVPYDMYILNASNPDTAFNSNPEVKETSGDFSSVDLSFLPDEVTQENKDQPVISKHE :::::::::::::::::::::::::::::::::::::::::::::::::::::::::::: NP_950 FSPVVPYDMYILNASNPDTAFNSNPEVKETSGDFSSVDLSFLPDEVTQENKDQPVISKHE 70 80 90 100 110 120 130 140 150 160 170 180 pF1KB7 TEENSESQSPQSRLPSPSEQDVGLGLNSSSLSNSHSQLHPGDTDSVQPSPEKPNSDSLSL :::::::::::::::::::::::::::::::::::::::::::::::::::::::::::: NP_950 TEENSESQSPQSRLPSPSEQDVGLGLNSSSLSNSHSQLHPGDTDSVQPSPEKPNSDSLSL 130 140 150 160 170 180 190 200 210 220 230 240 pF1KB7 ASITPMTPMTPISECCGIVPQLQNIVSTVNLACKLDLKKIALHAKNAEYNPKRFAAVIMR :::::::::::::::::::::::::::::::::::::::::::::::::::::::::::: NP_950 ASITPMTPMTPISECCGIVPQLQNIVSTVNLACKLDLKKIALHAKNAEYNPKRFAAVIMR 190 200 210 220 230 240 250 260 270 280 290 300 pF1KB7 IREPRTTALIFSSGKMVCTGAKSEEQSRLAARKYARVVQKLGFPARFLDFKIQNMVGSCD :::::::::::::::::::::::::::::::::::::::::::::::::::::::::::: NP_950 IREPRTTALIFSSGKMVCTGAKSEEQSRLAARKYARVVQKLGFPARFLDFKIQNMVGSCD 250 260 270 280 290 300 310 320 330 340 350 360 pF1KB7 VRFPIRLEGLVLTHQQFSSYEPELFPGLIYRMVKPRIVLLIFVSGKVVLTGAKERSEIYE :::::::::::::::::::::::::::::::::::::::::::::::::::::::::::: NP_950 VRFPIRLEGLVLTHQQFSSYEPELFPGLIYRMVKPRIVLLIFVSGKVVLTGAKERSEIYE 310 320 330 340 350 360 370 pF1KB7 AFENIYPILKGFKKA ::::::::::::::: NP_950 AFENIYPILKGFKKA 370 >>NP_003185 (OMIM: 168600,600075,607136) TATA-box-bindin (339 aa) initn: 1429 init1: 1150 opt: 1234 Z-score: 944.8 bits: 183.4 E(85289): 6.9e-46 Smith-Waterman score: 1234; 59.4% identity (77.5% similar) in 342 aa overlap (33-374:1-337) 10 20 30 40 50 60 pF1KB7 SAPWPERVPRLLAPRLPSYPPPPPTVGLPSMEQEETYLELYLDQCAAQDGLAPPRSPLFS :.:... : : . :. .: : :.:: NP_003 MDQNNS-LPPYAQGLASPQGAMTPGIPIFS 10 20 70 80 90 100 110 120 pF1KB7 PVVPYDMYILNASNPDTAFNSNPEVKETSGDFSSVDLSFLPDEVTQENKDQPVISKHETE :..:: . .:. :.: . .. . . .. :....: .... . NP_003 PMMPYGTGL----TPQPIQNTNSLSILEEQQRQQQQQQQQQQQQQQQQQQQQQQQQQQQQ 30 40 50 60 70 80 130 140 150 160 170 180 pF1KB7 ENSESQSPQSRLPSPSEQDVGLGLNSSSLSNSHSQLHPGDTDSVQPSPEKPNSDSLSLAS .....:. :. . . . :. ... :.. :: ..: .. : : .. NP_003 QQQQQQQQQQAVAAAAVQQSTSQQATQGTSGQAPQLFHSQTLTTAPLPGTTPLYPSPMTP 90 100 110 120 130 140 190 200 210 220 230 240 pF1KB7 ITPMTPMTPISECCGIVPQLQNIVSTVNLACKLDLKKIALHAKNAEYNPKRFAAVIMRIR .::.:: :: :: :::::::::::::::.:::::: :::.:.::::::::::::::::: NP_003 MTPITPATPASESSGIVPQLQNIVSTVNLGCKLDLKTIALRARNAEYNPKRFAAVIMRIR 150 160 170 180 190 200 250 260 270 280 290 300 pF1KB7 EPRTTALIFSSGKMVCTGAKSEEQSRLAARKYARVVQKLGFPARFLDFKIQNMVGSCDVR :::::::::::::::::::::::::::::::::::::::::::.:::::::::::::::. NP_003 EPRTTALIFSSGKMVCTGAKSEEQSRLAARKYARVVQKLGFPAKFLDFKIQNMVGSCDVK 210 220 230 240 250 260 310 320 330 340 350 360 pF1KB7 FPIRLEGLVLTHQQFSSYEPELFPGLIYRMVKPRIVLLIFVSGKVVLTGAKERSEIYEAF ::::::::::::::::::::::::::::::.:::::::::::::::::::: :.:::::: NP_003 FPIRLEGLVLTHQQFSSYEPELFPGLIYRMIKPRIVLLIFVSGKVVLTGAKVRAEIYEAF 270 280 290 300 310 320 370 pF1KB7 ENIYPILKGFKKA ::::::::::.: NP_003 ENIYPILKGFRKTT 330 >>NP_001165556 (OMIM: 168600,600075,607136) TATA-box-bin (319 aa) initn: 1429 init1: 1150 opt: 1217 Z-score: 932.4 bits: 181.0 E(85289): 3.4e-45 Smith-Waterman score: 1217; 61.8% identity (79.0% similar) in 319 aa overlap (56-374:3-317) 30 40 50 60 70 80 pF1KB7 PTVGLPSMEQEETYLELYLDQCAAQDGLAPPRSPLFSPVVPYDMYILNASNPDTAFNSNP : :.:::..:: . .:. :.: NP_001 MTPGIPIFSPMMPYGTGL----TPQPIQNTNS 10 20 90 100 110 120 130 140 pF1KB7 EVKETSGDFSSVDLSFLPDEVTQENKDQPVISKHETEENSESQSPQSRLPSPSEQDVGLG . .. . . .. :....: .... ......:. :. . . . :. NP_001 LSILEEQQRQQQQQQQQQQQQQQQQQQQQQQQQQQQQQQQQQQQQQQAVAAAAVQQSTSQ 30 40 50 60 70 80 150 160 170 180 190 200 pF1KB7 LNSSSLSNSHSQLHPGDTDSVQPSPEKPNSDSLSLASITPMTPMTPISECCGIVPQLQNI ... :.. :: ..: .. : : .. .::.:: :: :: ::::::::: NP_001 QATQGTSGQAPQLFHSQTLTTAPLPGTTPLYPSPMTPMTPITPATPASESSGIVPQLQNI 90 100 110 120 130 140 210 220 230 240 250 260 pF1KB7 VSTVNLACKLDLKKIALHAKNAEYNPKRFAAVIMRIREPRTTALIFSSGKMVCTGAKSEE ::::::.:::::: :::.:.:::::::::::::::::::::::::::::::::::::::: NP_001 VSTVNLGCKLDLKTIALRARNAEYNPKRFAAVIMRIREPRTTALIFSSGKMVCTGAKSEE 150 160 170 180 190 200 270 280 290 300 310 320 pF1KB7 QSRLAARKYARVVQKLGFPARFLDFKIQNMVGSCDVRFPIRLEGLVLTHQQFSSYEPELF ::::::::::::::::::::.:::::::::::::::.::::::::::::::::::::::: NP_001 QSRLAARKYARVVQKLGFPAKFLDFKIQNMVGSCDVKFPIRLEGLVLTHQQFSSYEPELF 210 220 230 240 250 260 330 340 350 360 370 pF1KB7 PGLIYRMVKPRIVLLIFVSGKVVLTGAKERSEIYEAFENIYPILKGFKKA :::::::.:::::::::::::::::::: :.::::::::::::::::.: NP_001 PGLIYRMIKPRIVLLIFVSGKVVLTGAKVRAEIYEAFENIYPILKGFRKTT 270 280 290 300 310 >>NP_001240605 (OMIM: 605521) TATA box-binding protein-l (186 aa) initn: 371 init1: 371 opt: 451 Z-score: 359.8 bits: 74.2 E(85289): 2.7e-13 Smith-Waterman score: 451; 41.7% identity (75.0% similar) in 168 aa overlap (202-369:13-178) 180 190 200 210 220 230 pF1KB7 KPNSDSLSLASITPMTPMTPISECCGIVPQLQNIVSTVNLACKLDLKKIALHAKNAEYNP . :.: . :.:.:.::::.. :. :. NP_001 MDADSDVALDILITNVVCVFRTRCHLNLRKIALEGANVIYK- 10 20 30 40 240 250 260 270 280 290 pF1KB7 KRFAAVIMRIREPRTTALIFSSGKMVCTGAKSEEQSRLAARKYARVVQKLGFPARFLDFK . . :.:..:.:: :: :.::::..:::: :::.....::. :: .::::: . : ::: NP_001 RDVGKVLMKLRKPRITATIWSSGKIICTGATSEEEAKFGARRLARSLQKLGFQVIFTDFK 50 60 70 80 90 100 300 310 320 330 340 350 pF1KB7 IQNMVGSCDVRFPIRLEGLVLTHQQFSSYEPELFPGLIYRMVKPRIVLLIFVSGKVVLTG . :... :.. : ::: .. ... .:::::: :.. ::. . : .: :: .:....:: NP_001 VVNVLAVCNMPFEIRLPEFTKNNRPHASYEPELHPAVCYRIKSLRATLQIFSTGSITVTG 110 120 130 140 150 160 360 370 pF1KB7 AKERSEIYEAFENIYPILKGFKKA . .. . : :.:::.. NP_001 PNVKA-VATAVEQIYPFVFESRKEIL 170 180 >>NP_004856 (OMIM: 605521) TATA box-binding protein-like (186 aa) initn: 371 init1: 371 opt: 451 Z-score: 359.8 bits: 74.2 E(85289): 2.7e-13 Smith-Waterman score: 451; 41.7% identity (75.0% similar) in 168 aa overlap (202-369:13-178) 180 190 200 210 220 230 pF1KB7 KPNSDSLSLASITPMTPMTPISECCGIVPQLQNIVSTVNLACKLDLKKIALHAKNAEYNP . :.: . :.:.:.::::.. :. :. NP_004 MDADSDVALDILITNVVCVFRTRCHLNLRKIALEGANVIYK- 10 20 30 40 240 250 260 270 280 290 pF1KB7 KRFAAVIMRIREPRTTALIFSSGKMVCTGAKSEEQSRLAARKYARVVQKLGFPARFLDFK . . :.:..:.:: :: :.::::..:::: :::.....::. :: .::::: . : ::: NP_004 RDVGKVLMKLRKPRITATIWSSGKIICTGATSEEEAKFGARRLARSLQKLGFQVIFTDFK 50 60 70 80 90 100 300 310 320 330 340 350 pF1KB7 IQNMVGSCDVRFPIRLEGLVLTHQQFSSYEPELFPGLIYRMVKPRIVLLIFVSGKVVLTG . :... :.. : ::: .. ... .:::::: :.. ::. . : .: :: .:....:: NP_004 VVNVLAVCNMPFEIRLPEFTKNNRPHASYEPELHPAVCYRIKSLRATLQIFSTGSITVTG 110 120 130 140 150 160 360 370 pF1KB7 AKERSEIYEAFENIYPILKGFKKA . .. . : :.:::.. NP_004 PNVKA-VATAVEQIYPFVFESRKEIL 170 180 >>XP_016867002 (OMIM: 605521) PREDICTED: TATA box-bindin (186 aa) initn: 371 init1: 371 opt: 451 Z-score: 359.8 bits: 74.2 E(85289): 2.7e-13 Smith-Waterman score: 451; 41.7% identity (75.0% similar) in 168 aa overlap (202-369:13-178) 180 190 200 210 220 230 pF1KB7 KPNSDSLSLASITPMTPMTPISECCGIVPQLQNIVSTVNLACKLDLKKIALHAKNAEYNP . :.: . :.:.:.::::.. :. :. XP_016 MDADSDVALDILITNVVCVFRTRCHLNLRKIALEGANVIYK- 10 20 30 40 240 250 260 270 280 290 pF1KB7 KRFAAVIMRIREPRTTALIFSSGKMVCTGAKSEEQSRLAARKYARVVQKLGFPARFLDFK . . :.:..:.:: :: :.::::..:::: :::.....::. :: .::::: . : ::: XP_016 RDVGKVLMKLRKPRITATIWSSGKIICTGATSEEEAKFGARRLARSLQKLGFQVIFTDFK 50 60 70 80 90 100 300 310 320 330 340 350 pF1KB7 IQNMVGSCDVRFPIRLEGLVLTHQQFSSYEPELFPGLIYRMVKPRIVLLIFVSGKVVLTG . :... :.. : ::: .. ... .:::::: :.. ::. . : .: :: .:....:: XP_016 VVNVLAVCNMPFEIRLPEFTKNNRPHASYEPELHPAVCYRIKSLRATLQIFSTGSITVTG 110 120 130 140 150 160 360 370 pF1KB7 AKERSEIYEAFENIYPILKGFKKA . .. . : :.:::.. XP_016 PNVKA-VATAVEQIYPFVFESRKEIL 170 180 375 residues in 1 query sequences 60827320 residues in 85289 library sequences Tcomplib [36.3.4 Apr, 2011] (8 proc) start: Mon Nov 7 16:42:14 2016 done: Mon Nov 7 16:42:15 2016 Total Scan time: 9.600 Total Display time: -0.020 Function used was FASTA [36.3.4 Apr, 2011]