Result of FASTA (omim) for pFN21AB5875
FASTA searches a protein or DNA sequence data bank 36.3.4 Apr, 2011
Please cite:
W.R. Pearson & D.J. Lipman PNAS (1988) 85:2444-2448

Query: pF1KB5875, 465 aa
  1>>>pF1KB5875 465 - 465 aa - 465 aa
Library: /omim/omim.rfq.tfa
  60827320 residues in 85289 sequences

Statistics:  Expectation_n fit: rho(ln(x))= 8.8566+/-0.000349; mu= 3.2427+/- 0.022
 mean_var=220.4303+/-43.847, 0's: 0 Z-trim(121.1): 33  B-trim: 0 in 0/59
 Lambda= 0.086385
 statistics sampled from 37308 (37341) to 37308 sequences
Algorithm: FASTA (3.7 Nov 2010) [optimized]
Parameters: BL50 matrix (15:-5), open/ext: -10/-2
 ktup: 2, E-join: 1 (0.767), E-opt: 0.2 (0.438), width:  16
 Scan time: 10.310

The best scores are:                                      opt bits E(85289)
NP_001940 (OMIM: 600427) transcription factor E2F3 ( 465) 3015 388.3 2.4e-107
XP_011512626 (OMIM: 600427) PREDICTED: transcripti ( 459) 2947 379.8 8.3e-105
XP_016865819 (OMIM: 600427) PREDICTED: transcripti ( 379) 2188 285.2 2.1e-76
XP_005248923 (OMIM: 600427) PREDICTED: transcripti ( 335) 2176 283.6 5.5e-76
XP_011512630 (OMIM: 600427) PREDICTED: transcripti ( 338) 2176 283.6 5.5e-76
XP_005248922 (OMIM: 600427) PREDICTED: transcripti ( 340) 2176 283.6 5.5e-76
NP_001230005 (OMIM: 600427) transcription factor E ( 334) 2108 275.2 1.9e-73
NP_004082 (OMIM: 600426) transcription factor E2F2 ( 437)  961 132.3 2.6e-30
XP_011539170 (OMIM: 600426) PREDICTED: transcripti ( 435)  931 128.6 3.4e-29
XP_011539172 (OMIM: 600426) PREDICTED: transcripti ( 350)  928 128.1 3.8e-29
NP_005216 (OMIM: 189971) transcription factor E2F1 ( 437)  797 111.9 3.7e-24
NP_001265204 (OMIM: 602944) transcription factor E ( 249)  612 88.6 2.1e-17
NP_937987 (OMIM: 602944) transcription factor E2F6 ( 281)  612 88.7 2.3e-17
NP_001265206 (OMIM: 602944) transcription factor E ( 206)  558 81.8 1.9e-15
NP_001265207 (OMIM: 602944) transcription factor E ( 206)  558 81.8 1.9e-15
NP_001265205 (OMIM: 602944) transcription factor E ( 206)  558 81.8 1.9e-15
XP_016859037 (OMIM: 602944) PREDICTED: transcripti ( 287)  537 79.3 1.5e-14
XP_016859036 (OMIM: 602944) PREDICTED: transcripti ( 319)  537 79.4 1.6e-14
NP_001941 (OMIM: 600659) transcription factor E2F4 ( 413)  514 76.6 1.4e-13
XP_005245805 (OMIM: 600426) PREDICTED: transcripti ( 249)  492 73.7 6.6e-13
XP_011539173 (OMIM: 600426) PREDICTED: transcripti ( 241)  488 73.2 9.1e-13
XP_005245806 (OMIM: 600426) PREDICTED: transcripti ( 241)  488 73.2 9.1e-13
XP_016859038 (OMIM: 602944) PREDICTED: transcripti ( 244)  483 72.5 1.4e-12
NP_001077057 (OMIM: 600967) transcription factor E ( 345)  484 72.8 1.7e-12
NP_001942 (OMIM: 600967) transcription factor E2F5 ( 346)  481 72.4 2.2e-12
NP_997705 (OMIM: 602944) transcription factor E2F6 ( 129)  306 50.3 3.8e-06


>>NP_001940 (OMIM: 600427) transcription factor E2F3 iso  (465 aa)
 initn: 3015 init1: 3015 opt: 3015  Z-score: 2048.3  bits: 388.3 E(85289): 2.4e-107
Smith-Waterman score: 3015; 100.0% identity (100.0% similar) in 465 aa overlap (1-465:1-465)

               10        20        30        40        50        60
pF1KB5 MRKGIQPALEQYLVTAGGGEGAAVVAAAAAASMDKRALLASPGFAAAAAAAAAPGAYIQI
       ::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
NP_001 MRKGIQPALEQYLVTAGGGEGAAVVAAAAAASMDKRALLASPGFAAAAAAAAAPGAYIQI
               10        20        30        40        50        60

               70        80        90       100       110       120
pF1KB5 LTTNTSTTSCSSSLQSGAVAAGPLLPSAPGAEQTAGSLLYTTPHGPSSRAGLLQQPPALG
       ::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
NP_001 LTTNTSTTSCSSSLQSGAVAAGPLLPSAPGAEQTAGSLLYTTPHGPSSRAGLLQQPPALG
               70        80        90       100       110       120

              130       140       150       160       170       180
pF1KB5 RGGSGGGGGPPAKRRLELGESGHQYLSDGLKTPKGKGRAALRSPDSPKTPKSPSEKTRYD
       ::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
NP_001 RGGSGGGGGPPAKRRLELGESGHQYLSDGLKTPKGKGRAALRSPDSPKTPKSPSEKTRYD
              130       140       150       160       170       180

              190       200       210       220       230       240
pF1KB5 TSLGLLTKKFIQLLSQSPDGVLDLNKAAEVLKVQKRRIYDITNVLEGIHLIKKKSKNNVQ
       ::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
NP_001 TSLGLLTKKFIQLLSQSPDGVLDLNKAAEVLKVQKRRIYDITNVLEGIHLIKKKSKNNVQ
              190       200       210       220       230       240

              250       260       270       280       290       300
pF1KB5 WMGCSLSEDGGMLAQCQGLSKEVTELSQEEKKLDELIQSCTLDLKLLTEDSENQRLAYVT
       ::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
NP_001 WMGCSLSEDGGMLAQCQGLSKEVTELSQEEKKLDELIQSCTLDLKLLTEDSENQRLAYVT
              250       260       270       280       290       300

              310       320       330       340       350       360
pF1KB5 YQDIRKISGLKDQTVIVVKAPPETRLEVPDSIESLQIHLASTQGPIEVYLCPEETETHSP
       ::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
NP_001 YQDIRKISGLKDQTVIVVKAPPETRLEVPDSIESLQIHLASTQGPIEVYLCPEETETHSP
              310       320       330       340       350       360

              370       380       390       400       410       420
pF1KB5 MKTNNQDHNGNIPKPASKDLASTNSGHSDCSVSMGNLSPLASPANLLQQTEDQIPSNLEG
       ::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
NP_001 MKTNNQDHNGNIPKPASKDLASTNSGHSDCSVSMGNLSPLASPANLLQQTEDQIPSNLEG
              370       380       390       400       410       420

              430       440       450       460     
pF1KB5 PFVNLLPPLLQEDYLLSLGEEEGISDLFDAYDLEKLPLVEDFMCS
       :::::::::::::::::::::::::::::::::::::::::::::
NP_001 PFVNLLPPLLQEDYLLSLGEEEGISDLFDAYDLEKLPLVEDFMCS
              430       440       450       460     

>>XP_011512626 (OMIM: 600427) PREDICTED: transcription f  (459 aa)
 initn: 1913 init1: 1913 opt: 2947  Z-score: 2002.6  bits: 379.8 E(85289): 8.3e-105
Smith-Waterman score: 2947; 98.5% identity (98.7% similar) in 465 aa overlap (1-465:1-459)

               10        20        30        40        50        60
pF1KB5 MRKGIQPALEQYLVTAGGGEGAAVVAAAAAASMDKRALLASPGFAAAAAAAAAPGAYIQI
       ::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
XP_011 MRKGIQPALEQYLVTAGGGEGAAVVAAAAAASMDKRALLASPGFAAAAAAAAAPGAYIQI
               10        20        30        40        50        60

               70        80        90       100       110       120
pF1KB5 LTTNTSTTSCSSSLQSGAVAAGPLLPSAPGAEQTAGSLLYTTPHGPSSRAGLLQQPPALG
       ::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
XP_011 LTTNTSTTSCSSSLQSGAVAAGPLLPSAPGAEQTAGSLLYTTPHGPSSRAGLLQQPPALG
               70        80        90       100       110       120

              130       140       150       160       170       180
pF1KB5 RGGSGGGGGPPAKRRLELGESGHQYLSDGLKTPKGKGRAALRSPDSPKTPKSPSEKTRYD
       ::::::::::::::::::::::::::::::::::::::::::::::::      .:::::
XP_011 RGGSGGGGGPPAKRRLELGESGHQYLSDGLKTPKGKGRAALRSPDSPK------KKTRYD
              130       140       150       160             170    

              190       200       210       220       230       240
pF1KB5 TSLGLLTKKFIQLLSQSPDGVLDLNKAAEVLKVQKRRIYDITNVLEGIHLIKKKSKNNVQ
       ::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
XP_011 TSLGLLTKKFIQLLSQSPDGVLDLNKAAEVLKVQKRRIYDITNVLEGIHLIKKKSKNNVQ
          180       190       200       210       220       230    

              250       260       270       280       290       300
pF1KB5 WMGCSLSEDGGMLAQCQGLSKEVTELSQEEKKLDELIQSCTLDLKLLTEDSENQRLAYVT
       ::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
XP_011 WMGCSLSEDGGMLAQCQGLSKEVTELSQEEKKLDELIQSCTLDLKLLTEDSENQRLAYVT
          240       250       260       270       280       290    

              310       320       330       340       350       360
pF1KB5 YQDIRKISGLKDQTVIVVKAPPETRLEVPDSIESLQIHLASTQGPIEVYLCPEETETHSP
       ::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
XP_011 YQDIRKISGLKDQTVIVVKAPPETRLEVPDSIESLQIHLASTQGPIEVYLCPEETETHSP
          300       310       320       330       340       350    

              370       380       390       400       410       420
pF1KB5 MKTNNQDHNGNIPKPASKDLASTNSGHSDCSVSMGNLSPLASPANLLQQTEDQIPSNLEG
       ::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
XP_011 MKTNNQDHNGNIPKPASKDLASTNSGHSDCSVSMGNLSPLASPANLLQQTEDQIPSNLEG
          360       370       380       390       400       410    

              430       440       450       460     
pF1KB5 PFVNLLPPLLQEDYLLSLGEEEGISDLFDAYDLEKLPLVEDFMCS
       :::::::::::::::::::::::::::::::::::::::::::::
XP_011 PFVNLLPPLLQEDYLLSLGEEEGISDLFDAYDLEKLPLVEDFMCS
          420       430       440       450         

>>XP_016865819 (OMIM: 600427) PREDICTED: transcription f  (379 aa)
 initn: 2185 init1: 2185 opt: 2188  Z-score: 1492.5  bits: 285.2 E(85289): 2.1e-76
Smith-Waterman score: 2188; 95.8% identity (97.2% similar) in 354 aa overlap (116-465:26-379)

          90       100       110       120       130           140 
pF1KB5 PSAPGAEQTAGSLLYTTPHGPSSRAGLLQQPPALGRGGSGGGGGPP----AKRRLELGES
                                     : .. ..:  :  .::    ::::::::::
XP_016      MHHKHSSSLSVNQRAVYQTLKNPAAPHTVPESGLRGRLSPPCIPQAKRRLELGES
                    10        20        30        40        50     

             150       160       170       180       190       200 
pF1KB5 GHQYLSDGLKTPKGKGRAALRSPDSPKTPKSPSEKTRYDTSLGLLTKKFIQLLSQSPDGV
       ::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
XP_016 GHQYLSDGLKTPKGKGRAALRSPDSPKTPKSPSEKTRYDTSLGLLTKKFIQLLSQSPDGV
          60        70        80        90       100       110     

             210       220       230       240       250       260 
pF1KB5 LDLNKAAEVLKVQKRRIYDITNVLEGIHLIKKKSKNNVQWMGCSLSEDGGMLAQCQGLSK
       ::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
XP_016 LDLNKAAEVLKVQKRRIYDITNVLEGIHLIKKKSKNNVQWMGCSLSEDGGMLAQCQGLSK
         120       130       140       150       160       170     

             270       280       290       300       310       320 
pF1KB5 EVTELSQEEKKLDELIQSCTLDLKLLTEDSENQRLAYVTYQDIRKISGLKDQTVIVVKAP
       ::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
XP_016 EVTELSQEEKKLDELIQSCTLDLKLLTEDSENQRLAYVTYQDIRKISGLKDQTVIVVKAP
         180       190       200       210       220       230     

             330       340       350       360       370       380 
pF1KB5 PETRLEVPDSIESLQIHLASTQGPIEVYLCPEETETHSPMKTNNQDHNGNIPKPASKDLA
       ::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
XP_016 PETRLEVPDSIESLQIHLASTQGPIEVYLCPEETETHSPMKTNNQDHNGNIPKPASKDLA
         240       250       260       270       280       290     

             390       400       410       420       430       440 
pF1KB5 STNSGHSDCSVSMGNLSPLASPANLLQQTEDQIPSNLEGPFVNLLPPLLQEDYLLSLGEE
       ::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
XP_016 STNSGHSDCSVSMGNLSPLASPANLLQQTEDQIPSNLEGPFVNLLPPLLQEDYLLSLGEE
         300       310       320       330       340       350     

             450       460     
pF1KB5 EGISDLFDAYDLEKLPLVEDFMCS
       ::::::::::::::::::::::::
XP_016 EGISDLFDAYDLEKLPLVEDFMCS
         360       370         

>>XP_005248923 (OMIM: 600427) PREDICTED: transcription f  (335 aa)
 initn: 2176 init1: 2176 opt: 2176  Z-score: 1485.2  bits: 283.6 E(85289): 5.5e-76
Smith-Waterman score: 2176; 100.0% identity (100.0% similar) in 334 aa overlap (132-465:2-335)

             110       120       130       140       150       160 
pF1KB5 TPHGPSSRAGLLQQPPALGRGGSGGGGGPPAKRRLELGESGHQYLSDGLKTPKGKGRAAL
                                     ::::::::::::::::::::::::::::::
XP_005                              MAKRRLELGESGHQYLSDGLKTPKGKGRAAL
                                            10        20        30 

             170       180       190       200       210       220 
pF1KB5 RSPDSPKTPKSPSEKTRYDTSLGLLTKKFIQLLSQSPDGVLDLNKAAEVLKVQKRRIYDI
       ::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
XP_005 RSPDSPKTPKSPSEKTRYDTSLGLLTKKFIQLLSQSPDGVLDLNKAAEVLKVQKRRIYDI
              40        50        60        70        80        90 

             230       240       250       260       270       280 
pF1KB5 TNVLEGIHLIKKKSKNNVQWMGCSLSEDGGMLAQCQGLSKEVTELSQEEKKLDELIQSCT
       ::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
XP_005 TNVLEGIHLIKKKSKNNVQWMGCSLSEDGGMLAQCQGLSKEVTELSQEEKKLDELIQSCT
             100       110       120       130       140       150 

             290       300       310       320       330       340 
pF1KB5 LDLKLLTEDSENQRLAYVTYQDIRKISGLKDQTVIVVKAPPETRLEVPDSIESLQIHLAS
       ::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
XP_005 LDLKLLTEDSENQRLAYVTYQDIRKISGLKDQTVIVVKAPPETRLEVPDSIESLQIHLAS
             160       170       180       190       200       210 

             350       360       370       380       390       400 
pF1KB5 TQGPIEVYLCPEETETHSPMKTNNQDHNGNIPKPASKDLASTNSGHSDCSVSMGNLSPLA
       ::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
XP_005 TQGPIEVYLCPEETETHSPMKTNNQDHNGNIPKPASKDLASTNSGHSDCSVSMGNLSPLA
             220       230       240       250       260       270 

             410       420       430       440       450       460 
pF1KB5 SPANLLQQTEDQIPSNLEGPFVNLLPPLLQEDYLLSLGEEEGISDLFDAYDLEKLPLVED
       ::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
XP_005 SPANLLQQTEDQIPSNLEGPFVNLLPPLLQEDYLLSLGEEEGISDLFDAYDLEKLPLVED
             280       290       300       310       320       330 

           
pF1KB5 FMCS
       ::::
XP_005 FMCS
           

>>XP_011512630 (OMIM: 600427) PREDICTED: transcription f  (338 aa)
 initn: 2176 init1: 2176 opt: 2176  Z-score: 1485.1  bits: 283.6 E(85289): 5.5e-76
Smith-Waterman score: 2176; 100.0% identity (100.0% similar) in 334 aa overlap (132-465:5-338)

             110       120       130       140       150       160 
pF1KB5 TPHGPSSRAGLLQQPPALGRGGSGGGGGPPAKRRLELGESGHQYLSDGLKTPKGKGRAAL
                                     ::::::::::::::::::::::::::::::
XP_011                           MTLEAKRRLELGESGHQYLSDGLKTPKGKGRAAL
                                         10        20        30    

             170       180       190       200       210       220 
pF1KB5 RSPDSPKTPKSPSEKTRYDTSLGLLTKKFIQLLSQSPDGVLDLNKAAEVLKVQKRRIYDI
       ::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
XP_011 RSPDSPKTPKSPSEKTRYDTSLGLLTKKFIQLLSQSPDGVLDLNKAAEVLKVQKRRIYDI
           40        50        60        70        80        90    

             230       240       250       260       270       280 
pF1KB5 TNVLEGIHLIKKKSKNNVQWMGCSLSEDGGMLAQCQGLSKEVTELSQEEKKLDELIQSCT
       ::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
XP_011 TNVLEGIHLIKKKSKNNVQWMGCSLSEDGGMLAQCQGLSKEVTELSQEEKKLDELIQSCT
          100       110       120       130       140       150    

             290       300       310       320       330       340 
pF1KB5 LDLKLLTEDSENQRLAYVTYQDIRKISGLKDQTVIVVKAPPETRLEVPDSIESLQIHLAS
       ::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
XP_011 LDLKLLTEDSENQRLAYVTYQDIRKISGLKDQTVIVVKAPPETRLEVPDSIESLQIHLAS
          160       170       180       190       200       210    

             350       360       370       380       390       400 
pF1KB5 TQGPIEVYLCPEETETHSPMKTNNQDHNGNIPKPASKDLASTNSGHSDCSVSMGNLSPLA
       ::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
XP_011 TQGPIEVYLCPEETETHSPMKTNNQDHNGNIPKPASKDLASTNSGHSDCSVSMGNLSPLA
          220       230       240       250       260       270    

             410       420       430       440       450       460 
pF1KB5 SPANLLQQTEDQIPSNLEGPFVNLLPPLLQEDYLLSLGEEEGISDLFDAYDLEKLPLVED
       ::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
XP_011 SPANLLQQTEDQIPSNLEGPFVNLLPPLLQEDYLLSLGEEEGISDLFDAYDLEKLPLVED
          280       290       300       310       320       330    

           
pF1KB5 FMCS
       ::::
XP_011 FMCS
           

>>XP_005248922 (OMIM: 600427) PREDICTED: transcription f  (340 aa)
 initn: 2176 init1: 2176 opt: 2176  Z-score: 1485.1  bits: 283.6 E(85289): 5.5e-76
Smith-Waterman score: 2176; 100.0% identity (100.0% similar) in 334 aa overlap (132-465:7-340)

             110       120       130       140       150       160 
pF1KB5 TPHGPSSRAGLLQQPPALGRGGSGGGGGPPAKRRLELGESGHQYLSDGLKTPKGKGRAAL
                                     ::::::::::::::::::::::::::::::
XP_005                         MPLQQQAKRRLELGESGHQYLSDGLKTPKGKGRAAL
                                       10        20        30      

             170       180       190       200       210       220 
pF1KB5 RSPDSPKTPKSPSEKTRYDTSLGLLTKKFIQLLSQSPDGVLDLNKAAEVLKVQKRRIYDI
       ::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
XP_005 RSPDSPKTPKSPSEKTRYDTSLGLLTKKFIQLLSQSPDGVLDLNKAAEVLKVQKRRIYDI
         40        50        60        70        80        90      

             230       240       250       260       270       280 
pF1KB5 TNVLEGIHLIKKKSKNNVQWMGCSLSEDGGMLAQCQGLSKEVTELSQEEKKLDELIQSCT
       ::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
XP_005 TNVLEGIHLIKKKSKNNVQWMGCSLSEDGGMLAQCQGLSKEVTELSQEEKKLDELIQSCT
        100       110       120       130       140       150      

             290       300       310       320       330       340 
pF1KB5 LDLKLLTEDSENQRLAYVTYQDIRKISGLKDQTVIVVKAPPETRLEVPDSIESLQIHLAS
       ::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
XP_005 LDLKLLTEDSENQRLAYVTYQDIRKISGLKDQTVIVVKAPPETRLEVPDSIESLQIHLAS
        160       170       180       190       200       210      

             350       360       370       380       390       400 
pF1KB5 TQGPIEVYLCPEETETHSPMKTNNQDHNGNIPKPASKDLASTNSGHSDCSVSMGNLSPLA
       ::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
XP_005 TQGPIEVYLCPEETETHSPMKTNNQDHNGNIPKPASKDLASTNSGHSDCSVSMGNLSPLA
        220       230       240       250       260       270      

             410       420       430       440       450       460 
pF1KB5 SPANLLQQTEDQIPSNLEGPFVNLLPPLLQEDYLLSLGEEEGISDLFDAYDLEKLPLVED
       ::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
XP_005 SPANLLQQTEDQIPSNLEGPFVNLLPPLLQEDYLLSLGEEEGISDLFDAYDLEKLPLVED
        280       290       300       310       320       330      

           
pF1KB5 FMCS
       ::::
XP_005 FMCS
        340

>>NP_001230005 (OMIM: 600427) transcription factor E2F3   (334 aa)
 initn: 1913 init1: 1913 opt: 2108  Z-score: 1439.4  bits: 275.2 E(85289): 1.9e-73
Smith-Waterman score: 2108; 97.9% identity (98.2% similar) in 334 aa overlap (132-465:7-334)

             110       120       130       140       150       160 
pF1KB5 TPHGPSSRAGLLQQPPALGRGGSGGGGGPPAKRRLELGESGHQYLSDGLKTPKGKGRAAL
                                     ::::::::::::::::::::::::::::::
NP_001                         MPLQQQAKRRLELGESGHQYLSDGLKTPKGKGRAAL
                                       10        20        30      

             170       180       190       200       210       220 
pF1KB5 RSPDSPKTPKSPSEKTRYDTSLGLLTKKFIQLLSQSPDGVLDLNKAAEVLKVQKRRIYDI
       :::::::      .::::::::::::::::::::::::::::::::::::::::::::::
NP_001 RSPDSPK------KKTRYDTSLGLLTKKFIQLLSQSPDGVLDLNKAAEVLKVQKRRIYDI
         40              50        60        70        80        90

             230       240       250       260       270       280 
pF1KB5 TNVLEGIHLIKKKSKNNVQWMGCSLSEDGGMLAQCQGLSKEVTELSQEEKKLDELIQSCT
       ::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
NP_001 TNVLEGIHLIKKKSKNNVQWMGCSLSEDGGMLAQCQGLSKEVTELSQEEKKLDELIQSCT
              100       110       120       130       140       150

             290       300       310       320       330       340 
pF1KB5 LDLKLLTEDSENQRLAYVTYQDIRKISGLKDQTVIVVKAPPETRLEVPDSIESLQIHLAS
       ::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
NP_001 LDLKLLTEDSENQRLAYVTYQDIRKISGLKDQTVIVVKAPPETRLEVPDSIESLQIHLAS
              160       170       180       190       200       210

             350       360       370       380       390       400 
pF1KB5 TQGPIEVYLCPEETETHSPMKTNNQDHNGNIPKPASKDLASTNSGHSDCSVSMGNLSPLA
       ::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
NP_001 TQGPIEVYLCPEETETHSPMKTNNQDHNGNIPKPASKDLASTNSGHSDCSVSMGNLSPLA
              220       230       240       250       260       270

             410       420       430       440       450       460 
pF1KB5 SPANLLQQTEDQIPSNLEGPFVNLLPPLLQEDYLLSLGEEEGISDLFDAYDLEKLPLVED
       ::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
NP_001 SPANLLQQTEDQIPSNLEGPFVNLLPPLLQEDYLLSLGEEEGISDLFDAYDLEKLPLVED
              280       290       300       310       320       330

           
pF1KB5 FMCS
       ::::
NP_001 FMCS
           

>>NP_004082 (OMIM: 600426) transcription factor E2F2 [Ho  (437 aa)
 initn: 994 init1: 746 opt: 961  Z-score: 665.3  bits: 132.3 E(85289): 2.6e-30
Smith-Waterman score: 1084; 48.8% identity (67.3% similar) in 449 aa overlap (38-456:1-434)

        10        20        30        40        50        60       
pF1KB5 ALEQYLVTAGGGEGAAVVAAAAAASMDKRALLASPGFAAAAAAAAAPGAYIQILTTNTST
                                     .: .:  : :.::. .: .   .  :.   
NP_004                               MLQGPR-ALASAAGQTPKVVPAMSPTELWP
                                              10        20         

        70        80           90       100       110       120    
pF1KB5 TSCSSSLQSGAVAA--GPLLP-SAPGAEQTAGSLLYTTPHGPSSRAGLLQQPPALGRGGS
       .. ::     :.:.   :: : .:: :  . :. : .::::: ..  ...  ::      
NP_004 SGLSSPQLCPATATYYTPLYPQTAPPAA-APGTCLDATPHGPEGQ--VVRCLPA------
      30        40        50         60        70          80      

          130       140       150       160       170       180    
pF1KB5 GGGGGPPAKRRLELGESGHQYLSDGLKTPKGKGRAALRSPDSPKTPKSPSEKTRYDTSLG
          :  ::::.:.:   :.  . . . :::::   .   : ::::::::.::::::::::
NP_004 ---GRLPAKRKLDLEGIGRPVVPE-FPTPKGKCIRVDGLP-SPKTPKSPGEKTRYDTSLG
                  90       100        110        120       130     

          190       200       210       220       230       240    
pF1KB5 LLTKKFIQLLSQSPDGVLDLNKAAEVLKVQKRRIYDITNVLEGIHLIKKKSKNNVQWMGC
       ::::::: :::.: ::::::: ::::: ::::::::::::::::.::.::.:::.::.: 
NP_004 LLTKKFIYLLSESEDGVLDLNWAAEVLDVQKRRIYDITNVLEGIQLIRKKAKNNIQWVGR
         140       150       160       170       180       190     

          250       260       270       280       290       300    
pF1KB5 SLSEDGGMLAQCQGLSKEVTELSQEEKKLDELIQSCTLDLKLLTEDSENQRLAYVTYQDI
       .. ::    .. : :..:. :: . :. ::.:::::.:..: ::::. :.::::::::::
NP_004 GMFEDPTRPGKQQQLGQELKELMNTEQALDQLIQSCSLSFKHLTEDKANKRLAYVTYQDI
         200       210       220       230       240       250     

          310       320       330        340       350        360  
pF1KB5 RKISGLKDQTVIVVKAPPETRLEVPDSIE-SLQIHLASTQGPIEVYLCPEET-ETHSPMK
       : ....:.::::.:::::.:::::::  : .:::.: ::::::::::::::. :  :: .
NP_004 RAVGNFKEQTVIAVKAPPQTRLEVPDRTEDNLQIYLKSTQGPIEVYLCPEEVQEPDSPSE
         260       270       280       290       300       310     

            370        380       390                     400       
pF1KB5 TNNQDHNGNIPKPAS-KDLASTNSGHSDCSVSM--------------GNLSPLAS-----
           . .   :.: : .  .::. .  . ..:                .: :: .     
NP_004 EPLPSTSTLCPSPDSAQPSSSTDPSIMEPTASSVPAPAPTPQQAPPPPSLVPLEATDSLL
         320       330       340       350       360       370     

              410          420       430       440       450       
pF1KB5 --PANLLQQTEDQI--PS-NLEGPFVNLLPPLLQEDYLLSLGEEEGISDLFDAYDLEKLP
         :  ::::::::.  :.    .:.... : : :.::: .:   ::::::::.:::  : 
NP_004 ELPHPLLQQTEDQFLSPTLACSSPLISFSPSLDQDDYLWGLEAGEGISDLFDSYDLGDLL
         380       390       400       410       420       430     

       460     
pF1KB5 LVEDFMCS
               
NP_004 IN      
               

>>XP_011539170 (OMIM: 600426) PREDICTED: transcription f  (435 aa)
 initn: 656 init1: 408 opt: 931  Z-score: 645.1  bits: 128.6 E(85289): 3.4e-29
Smith-Waterman score: 1054; 48.6% identity (66.8% similar) in 449 aa overlap (38-456:1-432)

        10        20        30        40        50        60       
pF1KB5 ALEQYLVTAGGGEGAAVVAAAAAASMDKRALLASPGFAAAAAAAAAPGAYIQILTTNTST
                                     .: .:  : :.::. .: .   .  :.   
XP_011                               MLQGPR-ALASAAGQTPKVVPAMSPTELWP
                                              10        20         

        70        80           90       100       110       120    
pF1KB5 TSCSSSLQSGAVAA--GPLLP-SAPGAEQTAGSLLYTTPHGPSSRAGLLQQPPALGRGGS
       .. ::     :.:.   :: : .:: :  . :. : .::::: ..  ...  ::      
XP_011 SGLSSPQLCPATATYYTPLYPQTAPPAA-APGTCLDATPHGPEGQ--VVRCLPA------
      30        40        50         60        70          80      

          130       140       150       160       170       180    
pF1KB5 GGGGGPPAKRRLELGESGHQYLSDGLKTPKGKGRAALRSPDSPKTPKSPSEKTRYDTSLG
          :  ::::.:.:   :.  . . . :::::   .   : ::::::::.::::::::::
XP_011 ---GRLPAKRKLDLEGIGRPVVPE-FPTPKGKCIRVDGLP-SPKTPKSPGEKTRYDTSLG
                  90       100        110        120       130     

          190       200       210       220       230       240    
pF1KB5 LLTKKFIQLLSQSPDGVLDLNKAAEVLKVQKRRIYDITNVLEGIHLIKKKSKNNVQWMGC
       ::::::: :::.: ::::::: ::::: ::::::::::::::::.::.::.:::.:  : 
XP_011 LLTKKFIYLLSESEDGVLDLNWAAEVLDVQKRRIYDITNVLEGIQLIRKKAKNNIQ--GR
         140       150       160       170       180       190     

          250       260       270       280       290       300    
pF1KB5 SLSEDGGMLAQCQGLSKEVTELSQEEKKLDELIQSCTLDLKLLTEDSENQRLAYVTYQDI
       .. ::    .. : :..:. :: . :. ::.:::::.:..: ::::. :.::::::::::
XP_011 GMFEDPTRPGKQQQLGQELKELMNTEQALDQLIQSCSLSFKHLTEDKANKRLAYVTYQDI
           200       210       220       230       240       250   

          310       320       330        340       350        360  
pF1KB5 RKISGLKDQTVIVVKAPPETRLEVPDSIE-SLQIHLASTQGPIEVYLCPEET-ETHSPMK
       : ....:.::::.:::::.:::::::  : .:::.: ::::::::::::::. :  :: .
XP_011 RAVGNFKEQTVIAVKAPPQTRLEVPDRTEDNLQIYLKSTQGPIEVYLCPEEVQEPDSPSE
           260       270       280       290       300       310   

            370        380       390                     400       
pF1KB5 TNNQDHNGNIPKPAS-KDLASTNSGHSDCSVSM--------------GNLSPLAS-----
           . .   :.: : .  .::. .  . ..:                .: :: .     
XP_011 EPLPSTSTLCPSPDSAQPSSSTDPSIMEPTASSVPAPAPTPQQAPPPPSLVPLEATDSLL
           320       330       340       350       360       370   

              410          420       430       440       450       
pF1KB5 --PANLLQQTEDQI--PS-NLEGPFVNLLPPLLQEDYLLSLGEEEGISDLFDAYDLEKLP
         :  ::::::::.  :.    .:.... : : :.::: .:   ::::::::.:::  : 
XP_011 ELPHPLLQQTEDQFLSPTLACSSPLISFSPSLDQDDYLWGLEAGEGISDLFDSYDLGDLL
           380       390       400       410       420       430   

       460     
pF1KB5 LVEDFMCS
               
XP_011 IN      
               

>>XP_011539172 (OMIM: 600426) PREDICTED: transcription f  (350 aa)
 initn: 936 init1: 746 opt: 928  Z-score: 644.4  bits: 128.1 E(85289): 3.8e-29
Smith-Waterman score: 981; 51.1% identity (70.6% similar) in 374 aa overlap (38-405:1-350)

        10        20        30        40        50        60       
pF1KB5 ALEQYLVTAGGGEGAAVVAAAAAASMDKRALLASPGFAAAAAAAAAPGAYIQILTTNTST
                                     .: .:  : :.::. .: .   .  :.   
XP_011                               MLQGPR-ALASAAGQTPKVVPAMSPTELWP
                                              10        20         

        70        80           90       100       110       120    
pF1KB5 TSCSSSLQSGAVAA--GPLLP-SAPGAEQTAGSLLYTTPHGPSSRAGLLQQPPALGRGGS
       .. ::     :.:.   :: : .:: :  . :. : .::::: ..  ...  :: ::   
XP_011 SGLSSPQLCPATATYYTPLYPQTAPPAA-APGTCLDATPHGPEGQ--VVRCLPA-GR---
      30        40        50         60        70          80      

          130       140       150       160       170       180    
pF1KB5 GGGGGPPAKRRLELGESGHQYLSDGLKTPKGKGRAALRSPDSPKTPKSPSEKTRYDTSLG
             ::::.:.:   :.  . . . :::::   .   : ::::::::.::::::::::
XP_011 -----LPAKRKLDLEGIGRPVVPE-FPTPKGKCIRVDGLP-SPKTPKSPGEKTRYDTSLG
                  90       100        110        120       130     

          190       200       210       220       230       240    
pF1KB5 LLTKKFIQLLSQSPDGVLDLNKAAEVLKVQKRRIYDITNVLEGIHLIKKKSKNNVQWMGC
       ::::::: :::.: ::::::: ::::: ::::::::::::::::.::.::.:::.::.: 
XP_011 LLTKKFIYLLSESEDGVLDLNWAAEVLDVQKRRIYDITNVLEGIQLIRKKAKNNIQWVGR
         140       150       160       170       180       190     

          250       260       270       280       290       300    
pF1KB5 SLSEDGGMLAQCQGLSKEVTELSQEEKKLDELIQSCTLDLKLLTEDSENQRLAYVTYQDI
       .. ::    .. : :..:. :: . :. ::.:::::.:..: ::::. :.::::::::::
XP_011 GMFEDPTRPGKQQQLGQELKELMNTEQALDQLIQSCSLSFKHLTEDKANKRLAYVTYQDI
         200       210       220       230       240       250     

          310       320       330        340       350        360  
pF1KB5 RKISGLKDQTVIVVKAPPETRLEVPDSIE-SLQIHLASTQGPIEVYLCPEET-ETHSPMK
       : ....:.::::.:::::.:::::::  : .:::.: ::::::::::::::. :  :: .
XP_011 RAVGNFKEQTVIAVKAPPQTRLEVPDRTEDNLQIYLKSTQGPIEVYLCPEEVQEPDSPSE
         260       270       280       290       300       310     

            370       380        390       400       410       420 
pF1KB5 TNNQDHNGNIPKPASKDLA-STNSGHSDCSVSMGNLSPLASPANLLQQTEDQIPSNLEGP
                 : :... :  : .:.. . :.. . . : :: :.                
XP_011 E---------PLPSTSTLCPSPDSAQPSSSTDPSIMEPTASSAS                
                  320       330       340       350                

             430       440       450       460     
pF1KB5 FVNLLPPLLQEDYLLSLGEEEGISDLFDAYDLEKLPLVEDFMCS




465 residues in 1 query   sequences
60827320 residues in 85289 library sequences
 Tcomplib [36.3.4 Apr, 2011] (8 proc)
 start: Mon Nov  7 17:12:07 2016 done: Mon Nov  7 17:12:09 2016
 Total Scan time: 10.310 Total Display time:  0.040

Function used was FASTA [36.3.4 Apr, 2011]
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