FASTA searches a protein or DNA sequence data bank 36.3.4 Apr, 2011
Please cite:
W.R. Pearson & D.J. Lipman PNAS (1988) 85:2444-2448

Query: pF1KE5251, 180 aa
  1>>>pF1KE5251 180 - 180 aa - 180 aa
Library: human.CCDS.faa
  18511270 residues in 32554 sequences

Statistics:  Expectation_n fit: rho(ln(x))= 5.0054+/-0.000862; mu= 13.4747+/- 0.052
 mean_var=50.1141+/-10.039, 0's: 0 Z-trim(104.2): 18  B-trim: 103 in 1/50
 Lambda= 0.181173
 statistics sampled from 7782 (7783) to 7782 sequences
Algorithm: FASTA (3.7 Nov 2010) [optimized]
Parameters: BL50 matrix (15:-5), open/ext: -10/-2
 ktup: 2, E-join: 1 (0.618), E-opt: 0.2 (0.239), width:  16
 Scan time:  1.680

The best scores are:                                      opt bits E(32554)
CCDS54823.1 SPCS3 gene_id:60559|Hs108|chr4         ( 180) 1178 315.5 1.1e-86


>>CCDS54823.1 SPCS3 gene_id:60559|Hs108|chr4              (180 aa)
 initn: 1178 init1: 1178 opt: 1178  Z-score: 1669.5  bits: 315.5 E(32554): 1.1e-86
Smith-Waterman score: 1178; 100.0% identity (100.0% similar) in 180 aa overlap (1-180:1-180)

               10        20        30        40        50        60
pF1KE5 MNTVLSRANSLFAFSLSVMAALTFGCFITTAFKDRSVPVRLHVSRIMLKNVEDFTGPRER
       ::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
CCDS54 MNTVLSRANSLFAFSLSVMAALTFGCFITTAFKDRSVPVRLHVSRIMLKNVEDFTGPRER
               10        20        30        40        50        60

               70        80        90       100       110       120
pF1KE5 SDLGFITFDITADLENIFDWNVKQLFLYLSAEYSTKNNALNQVVLWDKIVLRGDNPKLLL
       ::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
CCDS54 SDLGFITFDITADLENIFDWNVKQLFLYLSAEYSTKNNALNQVVLWDKIVLRGDNPKLLL
               70        80        90       100       110       120

              130       140       150       160       170       180
pF1KE5 KDMKTKYFFFDDGNGLKGNRNVTLTLSWNVVPNAGILPLVTGSGHVSVPFPDTYEITKSY
       ::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
CCDS54 KDMKTKYFFFDDGNGLKGNRNVTLTLSWNVVPNAGILPLVTGSGHVSVPFPDTYEITKSY
              130       140       150       160       170       180




180 residues in 1 query   sequences
18511270 residues in 32554 library sequences
 Tcomplib [36.3.4 Apr, 2011] (8 proc)
 start: Mon Nov  7 22:53:04 2016 done: Mon Nov  7 22:53:04 2016
 Total Scan time:  1.680 Total Display time: -0.030

Function used was FASTA [36.3.4 Apr, 2011]