FASTA searches a protein or DNA sequence data bank 36.3.4 Apr, 2011 Please cite: W.R. Pearson & D.J. Lipman PNAS (1988) 85:2444-2448 Query: pF1KE3138, 350 aa 1>>>pF1KE3138 350 - 350 aa - 350 aa Library: /omim/omim.rfq.tfa 60827320 residues in 85289 sequences Statistics: Expectation_n fit: rho(ln(x))= 5.4837+/-0.000403; mu= 16.0263+/- 0.025 mean_var=77.8312+/-15.941, 0's: 0 Z-trim(112.5): 18 B-trim: 653 in 2/50 Lambda= 0.145378 statistics sampled from 21472 (21474) to 21472 sequences Algorithm: FASTA (3.7 Nov 2010) [optimized] Parameters: BL50 matrix (15:-5), open/ext: -10/-2 ktup: 2, E-join: 1 (0.617), E-opt: 0.2 (0.252), width: 16 Scan time: 7.280 The best scores are: opt bits E(85289) NP_008846 (OMIM: 300757,312600) protein XRP2 [Homo ( 350) 2393 511.5 1.1e-144 NP_003183 (OMIM: 602971) tubulin-specific chaperon ( 346) 352 83.4 7.8e-16 >>NP_008846 (OMIM: 300757,312600) protein XRP2 [Homo sap (350 aa) initn: 2393 init1: 2393 opt: 2393 Z-score: 2718.7 bits: 511.5 E(85289): 1.1e-144 Smith-Waterman score: 2393; 100.0% identity (100.0% similar) in 350 aa overlap (1-350:1-350) 10 20 30 40 50 60 pF1KE3 MGCFFSKRRKADKESRPENEEERPKQYSWDQREKVDPKDYMFSGLKDETVGRLPGTVAGQ :::::::::::::::::::::::::::::::::::::::::::::::::::::::::::: NP_008 MGCFFSKRRKADKESRPENEEERPKQYSWDQREKVDPKDYMFSGLKDETVGRLPGTVAGQ 10 20 30 40 50 60 70 80 90 100 110 120 pF1KE3 QFLIQDCENCNIYIFDHSATVTIDDCTNCIIFLGPVKGSVFFRNCRDCKCTLACQQFRVR :::::::::::::::::::::::::::::::::::::::::::::::::::::::::::: NP_008 QFLIQDCENCNIYIFDHSATVTIDDCTNCIIFLGPVKGSVFFRNCRDCKCTLACQQFRVR 70 80 90 100 110 120 130 140 150 160 170 180 pF1KE3 DCRKLEVFLCCATQPIIESSSNIKFGCFQWYYPELAFQFKDAGLSIFNNTWSNIHDFTPV :::::::::::::::::::::::::::::::::::::::::::::::::::::::::::: NP_008 DCRKLEVFLCCATQPIIESSSNIKFGCFQWYYPELAFQFKDAGLSIFNNTWSNIHDFTPV 130 140 150 160 170 180 190 200 210 220 230 240 pF1KE3 SGELNWSLLPEDAVVQDYVPIPTTEELKAVRVSTEANRSIVPISRGQRQKSSDESCLVVL :::::::::::::::::::::::::::::::::::::::::::::::::::::::::::: NP_008 SGELNWSLLPEDAVVQDYVPIPTTEELKAVRVSTEANRSIVPISRGQRQKSSDESCLVVL 190 200 210 220 230 240 250 260 270 280 290 300 pF1KE3 FAGDYTIANARKLIDEMVGKGFFLVQTKEVSMKAEDAQRVFREKAPDFLPLLNKGPVIAL :::::::::::::::::::::::::::::::::::::::::::::::::::::::::::: NP_008 FAGDYTIANARKLIDEMVGKGFFLVQTKEVSMKAEDAQRVFREKAPDFLPLLNKGPVIAL 250 260 270 280 290 300 310 320 330 340 350 pF1KE3 EFNGDGAVEVCQLIVNEIFNGTKMFVSESKETASGDVDSFYNFADIQMGI :::::::::::::::::::::::::::::::::::::::::::::::::: NP_008 EFNGDGAVEVCQLIVNEIFNGTKMFVSESKETASGDVDSFYNFADIQMGI 310 320 330 340 350 >>NP_003183 (OMIM: 602971) tubulin-specific chaperone C (346 aa) initn: 354 init1: 316 opt: 352 Z-score: 405.2 bits: 83.4 E(85289): 7.8e-16 Smith-Waterman score: 352; 29.9% identity (70.8% similar) in 154 aa overlap (42-192:186-339) 20 30 40 50 60 70 pF1KE3 DKESRPENEEERPKQYSWDQREKVDPKDYMFSGLKDETVGRLPGTVAGQQFLIQDCENCN ::.:..... . . . .. :. . ::. NP_003 PGIPPAVESIQDSPLPKKAEGDLGPSWVCGFSNLESQVLEKRASELHQRDVLLTELSNCT 160 170 180 190 200 210 80 90 100 110 120 130 pF1KE3 IYIFDHSATVTIDDCTNCIIFLGPVKGSVFFRNCRDCKCTLACQQFRVRDCRKLEVFLCC . .. . :. . .: .. :::. :::...: :: ..::::.:... . ..:: NP_003 VRLYGNPNTLRLTKAHSCKLLCGPVSTSVFLEDCSDCVLAVACQQLRIHSTKDTRIFLQV 220 230 240 250 260 270 140 150 160 170 180 pF1KE3 ATQPIIESSSNIKFGCFQWYYPELAFQFKDAGLSIFNNTWSNIHDFTPVSGEL---NWSL ... :.:. :.:.:. . : :::. .:...::. .:.:... ::. .. .. :::. NP_003 TSRAIVEDCSGIQFAPYTWSYPEIDKDFESSGLDRSKNNWNDVDDFNWLARDMASPNWSI 280 290 300 310 320 330 190 200 210 220 230 240 pF1KE3 LPEDAVVQDYVPIPTTEELKAVRVSTEANRSIVPISRGQRQKSSDESCLVVLFAGDYTIA :::. NP_003 LPEEERNIQWD 340 350 residues in 1 query sequences 60827320 residues in 85289 library sequences Tcomplib [36.3.4 Apr, 2011] (8 proc) start: Sun Nov 6 19:37:48 2016 done: Sun Nov 6 19:37:49 2016 Total Scan time: 7.280 Total Display time: -0.030 Function used was FASTA [36.3.4 Apr, 2011]