FASTA searches a protein or DNA sequence data bank 36.3.4 Apr, 2011 Please cite: W.R. Pearson & D.J. Lipman PNAS (1988) 85:2444-2448 Query: pF1KE2550, 383 aa 1>>>pF1KE2550 383 - 383 aa - 383 aa Library: /omim/omim.rfq.tfa 60827320 residues in 85289 sequences Statistics: Expectation_n fit: rho(ln(x))= 4.8782+/-0.000341; mu= 19.5566+/- 0.021 mean_var=76.4028+/-15.537, 0's: 0 Z-trim(114.5): 135 B-trim: 21 in 1/57 Lambda= 0.146730 statistics sampled from 24215 (24369) to 24215 sequences Algorithm: FASTA (3.7 Nov 2010) [optimized] Parameters: BL50 matrix (15:-5), open/ext: -10/-2 ktup: 2, E-join: 1 (0.665), E-opt: 0.2 (0.286), width: 16 Scan time: 5.550 The best scores are: opt bits E(85289) NP_000238 (OMIM: 600169) MHC class I polypeptide-r ( 383) 2623 564.8 1.2e-160 NP_001170990 (OMIM: 600169) MHC class I polypeptid ( 332) 2134 461.2 1.6e-129 NP_005922 (OMIM: 602436) MHC class I polypeptide-r ( 383) 2108 455.8 8e-128 NP_001276089 (OMIM: 602436) MHC class I polypeptid ( 351) 1938 419.7 5.1e-117 NP_001276082 (OMIM: 600169) MHC class I polypeptid ( 235) 1467 319.9 3.9e-87 NP_001276081 (OMIM: 600169) MHC class I polypeptid ( 235) 1467 319.9 3.9e-87 NP_001276090 (OMIM: 602436) MHC class I polypeptid ( 340) 1283 281.1 2.7e-75 NP_001276083 (OMIM: 600169) MHC class I polypeptid ( 194) 1030 227.3 2.4e-59 NP_001229971 (OMIM: 142840,177900,609423) HLA clas ( 366) 520 119.6 1.2e-26 XP_016866297 (OMIM: 143010) PREDICTED: HLA class I ( 399) 520 119.6 1.3e-26 XP_016866296 (OMIM: 143010) PREDICTED: HLA class I ( 399) 520 119.6 1.3e-26 NP_002108 (OMIM: 142840,177900,609423) HLA class I ( 366) 517 118.9 1.9e-26 NP_005505 (OMIM: 106300,142830,608579) major histo ( 362) 510 117.5 5.2e-26 NP_005507 (OMIM: 143010) HLA class I histocompatib ( 358) 507 116.8 8e-26 XP_016866298 (OMIM: 143010) PREDICTED: HLA class I ( 359) 507 116.8 8e-26 NP_002107 (OMIM: 142800,608579) HLA class I histoc ( 365) 507 116.8 8.1e-26 NP_001229687 (OMIM: 142800,608579) HLA class I his ( 365) 498 114.9 3e-25 XP_011512859 (OMIM: 106300,142830,608579) PREDICTE ( 323) 491 113.4 7.8e-25 NP_002118 (OMIM: 142871,600807) HLA class I histoc ( 338) 488 112.8 1.2e-24 XP_016866305 (OMIM: 142871,600807) PREDICTED: HLA ( 343) 488 112.8 1.3e-24 XP_011512866 (OMIM: 143110) PREDICTED: HLA class I ( 343) 488 112.8 1.3e-24 NP_061823 (OMIM: 143110) HLA class I histocompatib ( 346) 488 112.8 1.3e-24 XP_016866302 (OMIM: 143110) PREDICTED: HLA class I ( 388) 488 112.8 1.4e-24 XP_016866301 (OMIM: 143110) PREDICTED: HLA class I ( 420) 488 112.9 1.5e-24 XP_016866300 (OMIM: 143110) PREDICTED: HLA class I ( 431) 488 112.9 1.5e-24 XP_016866299 (OMIM: 143110) PREDICTED: HLA class I ( 435) 488 112.9 1.5e-24 NP_001091949 (OMIM: 143110) HLA class I histocompa ( 442) 488 112.9 1.5e-24 NP_001287678 (OMIM: 104300,176100,176200,235200,61 ( 337) 479 110.9 4.7e-24 NP_000401 (OMIM: 104300,176100,176200,235200,61263 ( 348) 479 110.9 4.8e-24 XP_011512845 (OMIM: 104300,176100,176200,235200,61 ( 348) 479 110.9 4.8e-24 XP_016885777 (OMIM: 142800,608579) PREDICTED: HLA ( 362) 475 110.0 8.8e-24 XP_005275388 (OMIM: 142800,608579) PREDICTED: HLA ( 391) 475 110.1 9.3e-24 NP_620578 (OMIM: 104300,176100,176200,235200,61263 ( 325) 469 108.7 2e-23 NP_001522 (OMIM: 600764) major histocompatibility ( 341) 468 108.5 2.4e-23 NP_620576 (OMIM: 104300,176100,176200,235200,61263 ( 260) 403 94.7 2.7e-19 XP_011507765 (OMIM: 600764) PREDICTED: major histo ( 254) 387 91.3 2.8e-18 NP_001176 (OMIM: 194460) zinc-alpha-2-glycoprotein ( 298) 374 88.6 2.1e-17 XP_016866304 (OMIM: 143110) PREDICTED: HLA class I ( 228) 361 85.7 1.2e-16 XP_016866303 (OMIM: 143110) PREDICTED: HLA class I ( 324) 361 85.9 1.5e-16 NP_004098 (OMIM: 601437) IgG receptor FcRn large s ( 365) 332 79.8 1.1e-14 NP_001129491 (OMIM: 601437) IgG receptor FcRn larg ( 365) 332 79.8 1.1e-14 NP_001181928 (OMIM: 600764) major histocompatibili ( 296) 309 74.8 2.9e-13 NP_620579 (OMIM: 104300,176100,176200,235200,61263 ( 168) 289 70.4 3.6e-12 NP_620573 (OMIM: 104300,176100,176200,235200,61263 ( 256) 289 70.5 4.9e-12 NP_620577 (OMIM: 104300,176100,176200,235200,61263 ( 246) 264 65.2 1.9e-10 NP_620575 (OMIM: 104300,176100,176200,235200,61263 ( 334) 264 65.3 2.3e-10 NP_620572 (OMIM: 104300,176100,176200,235200,61263 ( 242) 261 64.6 2.9e-10 XP_016866307 (OMIM: 142871,600807) PREDICTED: HLA ( 246) 261 64.6 2.9e-10 XP_016866306 (OMIM: 142871,600807) PREDICTED: HLA ( 246) 261 64.6 2.9e-10 NP_001091948 (OMIM: 143110) HLA class I histocompa ( 254) 242 60.6 4.8e-09 >>NP_000238 (OMIM: 600169) MHC class I polypeptide-relat (383 aa) initn: 2623 init1: 2623 opt: 2623 Z-score: 3005.0 bits: 564.8 E(85289): 1.2e-160 Smith-Waterman score: 2623; 99.7% identity (100.0% similar) in 382 aa overlap (1-382:1-382) 10 20 30 40 50 60 pF1KE2 MGLGPVFLLLAGIFPFAPPGAAAEPHSLRYNLTVLSWDGSVQSGFLTEVHLDGQPFLRCD :::::::::::::::::::::::::::::::::::::::::::::::::::::::::::: NP_000 MGLGPVFLLLAGIFPFAPPGAAAEPHSLRYNLTVLSWDGSVQSGFLTEVHLDGQPFLRCD 10 20 30 40 50 60 70 80 90 100 110 120 pF1KE2 RQKCRAKPQGQWAEDVLGNKTWDRETRDLTGNGKDLRMTLAHIKDQKEGLHSLQEIRVCE :::::::::::::::::::::::::::::::::::::::::::::::::::::::::::: NP_000 RQKCRAKPQGQWAEDVLGNKTWDRETRDLTGNGKDLRMTLAHIKDQKEGLHSLQEIRVCE 70 80 90 100 110 120 130 140 150 160 170 180 pF1KE2 IHEDNSTRSSQHFYYDGELFLSQNLETEEWTMPQSSRAQTLAMNVRNFLKEDAMKTKTHY :::::::::::::::::::::::::::.:::::::::::::::::::::::::::::::: NP_000 IHEDNSTRSSQHFYYDGELFLSQNLETKEWTMPQSSRAQTLAMNVRNFLKEDAMKTKTHY 130 140 150 160 170 180 190 200 210 220 230 240 pF1KE2 HAMHADCLQELRRYLKSGVVLRRTVPPMVNVTRSEASEGNITVTCRASGFYPWNITLSWR :::::::::::::::::::::::::::::::::::::::::::::::::::::::::::: NP_000 HAMHADCLQELRRYLKSGVVLRRTVPPMVNVTRSEASEGNITVTCRASGFYPWNITLSWR 190 200 210 220 230 240 250 260 270 280 290 300 pF1KE2 QDGVSLSHDTQQWGDVLPDGNGTYQTWVATRICQGEEQRFTCYMEHSGNHSTHPVPSGKV :::::::::::::::::::::::::::::::::::::::::::::::::::::::::::: NP_000 QDGVSLSHDTQQWGDVLPDGNGTYQTWVATRICQGEEQRFTCYMEHSGNHSTHPVPSGKV 250 260 270 280 290 300 310 320 330 340 350 360 pF1KE2 LVLQSHWQTFHVSAVAAAAIFVIIIFYVRCCKKKTSAAEGPELVSLQVLDQHPVGTSDHR :::::::::::::::::::::::::::::::::::::::::::::::::::::::::::: NP_000 LVLQSHWQTFHVSAVAAAAIFVIIIFYVRCCKKKTSAAEGPELVSLQVLDQHPVGTSDHR 310 320 330 340 350 360 370 380 pF1KE2 DATQLGFQPLMSDLGSTGSTEGT :::::::::::::::::::::: NP_000 DATQLGFQPLMSDLGSTGSTEGA 370 380 >>NP_001170990 (OMIM: 600169) MHC class I polypeptide-re (332 aa) initn: 2128 init1: 2128 opt: 2134 Z-score: 2446.4 bits: 461.2 E(85289): 1.6e-129 Smith-Waterman score: 2134; 93.9% identity (97.0% similar) in 330 aa overlap (1-330:1-329) 10 20 30 40 50 60 pF1KE2 MGLGPVFLLLAGIFPFAPPGAAAEPHSLRYNLTVLSWDGSVQSGFLTEVHLDGQPFLRCD ::::::::::::::::::::::::::::::::::::::::::::::.::::::::::: : NP_001 MGLGPVFLLLAGIFPFAPPGAAAEPHSLRYNLTVLSWDGSVQSGFLAEVHLDGQPFLRYD 10 20 30 40 50 60 70 80 90 100 110 120 pF1KE2 RQKCRAKPQGQWAEDVLGNKTWDRETRDLTGNGKDLRMTLAHIKDQKEGLHSLQEIRVCE :::::::::::::::::::::::::::::::::::::::::::::::::::::::::::: NP_001 RQKCRAKPQGQWAEDVLGNKTWDRETRDLTGNGKDLRMTLAHIKDQKEGLHSLQEIRVCE 70 80 90 100 110 120 130 140 150 160 170 180 pF1KE2 IHEDNSTRSSQHFYYDGELFLSQNLETEEWTMPQSSRAQTLAMNVRNFLKEDAMKTKTHY :::::::::::::::::::::::::::::::.:::::::::::::::::::::::::::: NP_001 IHEDNSTRSSQHFYYDGELFLSQNLETEEWTVPQSSRAQTLAMNVRNFLKEDAMKTKTHY 130 140 150 160 170 180 190 200 210 220 230 240 pF1KE2 HAMHADCLQELRRYLKSGVVLRRTVPPMVNVTRSEASEGNITVTCRASGFYPWNITLSWR :::::::::::::::.::::::::::::::::::::::::::::::::.::: :: :.:: NP_001 HAMHADCLQELRRYLESGVVLRRTVPPMVNVTRSEASEGNITVTCRASSFYPRNIILTWR 190 200 210 220 230 240 250 260 270 280 290 300 pF1KE2 QDGVSLSHDTQQWGDVLPDGNGTYQTWVATRICQGEEQRFTCYMEHSGNHSTHPVPSGKV :::::::::::::::::::::::::::::::::.:::::::::::::::::::::::::: NP_001 QDGVSLSHDTQQWGDVLPDGNGTYQTWVATRICRGEEQRFTCYMEHSGNHSTHPVPSGKV 250 260 270 280 290 300 310 320 330 340 350 360 pF1KE2 LVLQSHWQTFHVSAVAAAAIFVIIIFYVRCCKKKTSAAEGPELVSLQVLDQHPVGTSDHR :::::::::::::::::. . . .: : NP_001 LVLQSHWQTFHVSAVAAGCCY-FCYYYFLCPLL 310 320 330 >>NP_005922 (OMIM: 602436) MHC class I polypeptide-relat (383 aa) initn: 2108 init1: 2108 opt: 2108 Z-score: 2415.9 bits: 455.8 E(85289): 8e-128 Smith-Waterman score: 2108; 82.8% identity (91.4% similar) in 383 aa overlap (1-383:1-383) 10 20 30 40 50 60 pF1KE2 MGLGPVFLLLAGIFPFAPPGAAAEPHSLRYNLTVLSWDGSVQSGFLTEVHLDGQPFLRCD :::: :.:.:: ::::::.:::::::::::: ::: :::::::::.: ::::::::: : NP_005 MGLGRVLLFLAVAFPFAPPAAAAEPHSLRYNLMVLSQDGSVQSGFLAEGHLDGQPFLRYD 10 20 30 40 50 60 70 80 90 100 110 120 pF1KE2 RQKCRAKPQGQWAEDVLGNKTWDRETRDLTGNGKDLRMTLAHIKDQKEGLHSLQEIRVCE ::: ::::::::::.::: :::: ::.::: ::.::: ::.:::::: :::::::::::: NP_005 RQKRRAKPQGQWAENVLGAKTWDTETEDLTENGQDLRRTLTHIKDQKGGLHSLQEIRVCE 70 80 90 100 110 120 130 140 150 160 170 180 pF1KE2 IHEDNSTRSSQHFYYDGELFLSQNLETEEWTMPQSSRAQTLAMNVRNFLKEDAMKTKTHY ::::.:::.:.::::::::::::::::.: :.::::::::::::: :: ::::::::::: NP_005 IHEDSSTRGSRHFYYDGELFLSQNLETQESTVPQSSRAQTLAMNVTNFWKEDAMKTKTHY 130 140 150 160 170 180 190 200 210 220 230 240 pF1KE2 HAMHADCLQELRRYLKSGVVLRRTVPPMVNVTRSEASEGNITVTCRASGFYPWNITLSWR .::.:::::.:.:::::::..::::::::::: ::.::::::::::::.::: ::::.:: NP_005 RAMQADCLQKLQRYLKSGVAIRRTVPPMVNVTCSEVSEGNITVTCRASSFYPRNITLTWR 190 200 210 220 230 240 250 260 270 280 290 300 pF1KE2 QDGVSLSHDTQQWGDVLPDGNGTYQTWVATRICQGEEQRFTCYMEHSGNHSTHPVPSGKV ::::::::.::::::::::::::::::::::: :::::::::::::::::.::::::::. NP_005 QDGVSLSHNTQQWGDVLPDGNGTYQTWVATRIRQGEEQRFTCYMEHSGNHGTHPVPSGKA 250 260 270 280 290 300 310 320 330 340 350 360 pF1KE2 LVLQSHWQTFHVSAVAAAAIFVIIIFYVRCCKKKTSAAEGPELVSLQVLDQHPVGTSDHR :::::. : ..: . .:::. : :::::::::::::::::::::::::::.::: NP_005 LVLQSQRTDFPYVSAAMPCFVIIIILCVPCCKKKTSAAEGPELVSLQVLDQHPVGTGDHR 310 320 330 340 350 360 370 380 pF1KE2 DATQLGFQPLMSDLGSTGSTEGT ::.::::::::: ::::::::: NP_005 DAAQLGFQPLMSATGSTGSTEGT 370 380 >>NP_001276089 (OMIM: 602436) MHC class I polypeptide-re (351 aa) initn: 1938 init1: 1938 opt: 1938 Z-score: 2221.9 bits: 419.7 E(85289): 5.1e-117 Smith-Waterman score: 1938; 83.1% identity (91.7% similar) in 350 aa overlap (34-383:2-351) 10 20 30 40 50 60 pF1KE2 GPVFLLLAGIFPFAPPGAAAEPHSLRYNLTVLSWDGSVQSGFLTEVHLDGQPFLRCDRQK ::: :::::::::.: ::::::::: :::: NP_001 MVLSQDGSVQSGFLAEGHLDGQPFLRYDRQK 10 20 30 70 80 90 100 110 120 pF1KE2 CRAKPQGQWAEDVLGNKTWDRETRDLTGNGKDLRMTLAHIKDQKEGLHSLQEIRVCEIHE ::::::::::.::: :::: ::.::: ::.::: ::.:::::: ::::::::::::::: NP_001 RRAKPQGQWAENVLGAKTWDTETEDLTENGQDLRRTLTHIKDQKGGLHSLQEIRVCEIHE 40 50 60 70 80 90 130 140 150 160 170 180 pF1KE2 DNSTRSSQHFYYDGELFLSQNLETEEWTMPQSSRAQTLAMNVRNFLKEDAMKTKTHYHAM :.:::.:.::::::::::::::::.: :.::::::::::::: :: :::::::::::.:: NP_001 DSSTRGSRHFYYDGELFLSQNLETQESTVPQSSRAQTLAMNVTNFWKEDAMKTKTHYRAM 100 110 120 130 140 150 190 200 210 220 230 240 pF1KE2 HADCLQELRRYLKSGVVLRRTVPPMVNVTRSEASEGNITVTCRASGFYPWNITLSWRQDG .:::::.:.:::::::..::::::::::: ::.::::::::::::.::: ::::.::::: NP_001 QADCLQKLQRYLKSGVAIRRTVPPMVNVTCSEVSEGNITVTCRASSFYPRNITLTWRQDG 160 170 180 190 200 210 250 260 270 280 290 300 pF1KE2 VSLSHDTQQWGDVLPDGNGTYQTWVATRICQGEEQRFTCYMEHSGNHSTHPVPSGKVLVL :::::.::::::::::::::::::::::: :::::::::::::::::.::::::::.::: NP_001 VSLSHNTQQWGDVLPDGNGTYQTWVATRIRQGEEQRFTCYMEHSGNHGTHPVPSGKALVL 220 230 240 250 260 270 310 320 330 340 350 360 pF1KE2 QSHWQTFHVSAVAAAAIFVIIIFYVRCCKKKTSAAEGPELVSLQVLDQHPVGTSDHRDAT ::. : ..: . .:::. : :::::::::::::::::::::::::::.:::::. NP_001 QSQRTDFPYVSAAMPCFVIIIILCVPCCKKKTSAAEGPELVSLQVLDQHPVGTGDHRDAA 280 290 300 310 320 330 370 380 pF1KE2 QLGFQPLMSDLGSTGSTEGT ::::::::: ::::::::: NP_001 QLGFQPLMSATGSTGSTEGT 340 350 >>NP_001276082 (OMIM: 600169) MHC class I polypeptide-re (235 aa) initn: 1461 init1: 1461 opt: 1467 Z-score: 1685.2 bits: 319.9 E(85289): 3.9e-87 Smith-Waterman score: 1467; 92.3% identity (96.1% similar) in 233 aa overlap (98-330:1-232) 70 80 90 100 110 120 pF1KE2 PQGQWAEDVLGNKTWDRETRDLTGNGKDLRMTLAHIKDQKEGLHSLQEIRVCEIHEDNST :::::::::::::::::::::::::::::: NP_001 MTLAHIKDQKEGLHSLQEIRVCEIHEDNST 10 20 30 130 140 150 160 170 180 pF1KE2 RSSQHFYYDGELFLSQNLETEEWTMPQSSRAQTLAMNVRNFLKEDAMKTKTHYHAMHADC ::::::::::::::::::::::::.::::::::::::::::::::::::::::::::::: NP_001 RSSQHFYYDGELFLSQNLETEEWTVPQSSRAQTLAMNVRNFLKEDAMKTKTHYHAMHADC 40 50 60 70 80 90 190 200 210 220 230 240 pF1KE2 LQELRRYLKSGVVLRRTVPPMVNVTRSEASEGNITVTCRASGFYPWNITLSWRQDGVSLS ::::::::.::::::::::::::::::::::::::::::::.::: :: :.::::::::: NP_001 LQELRRYLESGVVLRRTVPPMVNVTRSEASEGNITVTCRASSFYPRNIILTWRQDGVSLS 100 110 120 130 140 150 250 260 270 280 290 300 pF1KE2 HDTQQWGDVLPDGNGTYQTWVATRICQGEEQRFTCYMEHSGNHSTHPVPSGKVLVLQSHW ::::::::::::::::::::::::::.::::::::::::::::::::::::::::::::: NP_001 HDTQQWGDVLPDGNGTYQTWVATRICRGEEQRFTCYMEHSGNHSTHPVPSGKVLVLQSHW 160 170 180 190 200 210 310 320 330 340 350 360 pF1KE2 QTFHVSAVAAAAIFVIIIFYVRCCKKKTSAAEGPELVSLQVLDQHPVGTSDHRDATQLGF ::::::::::. . . .: : NP_001 QTFHVSAVAAGCCY-FCYYYFLCPLL 220 230 >>NP_001276081 (OMIM: 600169) MHC class I polypeptide-re (235 aa) initn: 1461 init1: 1461 opt: 1467 Z-score: 1685.2 bits: 319.9 E(85289): 3.9e-87 Smith-Waterman score: 1467; 92.3% identity (96.1% similar) in 233 aa overlap (98-330:1-232) 70 80 90 100 110 120 pF1KE2 PQGQWAEDVLGNKTWDRETRDLTGNGKDLRMTLAHIKDQKEGLHSLQEIRVCEIHEDNST :::::::::::::::::::::::::::::: NP_001 MTLAHIKDQKEGLHSLQEIRVCEIHEDNST 10 20 30 130 140 150 160 170 180 pF1KE2 RSSQHFYYDGELFLSQNLETEEWTMPQSSRAQTLAMNVRNFLKEDAMKTKTHYHAMHADC ::::::::::::::::::::::::.::::::::::::::::::::::::::::::::::: NP_001 RSSQHFYYDGELFLSQNLETEEWTVPQSSRAQTLAMNVRNFLKEDAMKTKTHYHAMHADC 40 50 60 70 80 90 190 200 210 220 230 240 pF1KE2 LQELRRYLKSGVVLRRTVPPMVNVTRSEASEGNITVTCRASGFYPWNITLSWRQDGVSLS ::::::::.::::::::::::::::::::::::::::::::.::: :: :.::::::::: NP_001 LQELRRYLESGVVLRRTVPPMVNVTRSEASEGNITVTCRASSFYPRNIILTWRQDGVSLS 100 110 120 130 140 150 250 260 270 280 290 300 pF1KE2 HDTQQWGDVLPDGNGTYQTWVATRICQGEEQRFTCYMEHSGNHSTHPVPSGKVLVLQSHW ::::::::::::::::::::::::::.::::::::::::::::::::::::::::::::: NP_001 HDTQQWGDVLPDGNGTYQTWVATRICRGEEQRFTCYMEHSGNHSTHPVPSGKVLVLQSHW 160 170 180 190 200 210 310 320 330 340 350 360 pF1KE2 QTFHVSAVAAAAIFVIIIFYVRCCKKKTSAAEGPELVSLQVLDQHPVGTSDHRDATQLGF ::::::::::. . . .: : NP_001 QTFHVSAVAAGCCY-FCYYYFLCPLL 220 230 >>NP_001276090 (OMIM: 602436) MHC class I polypeptide-re (340 aa) initn: 1844 init1: 1283 opt: 1283 Z-score: 1472.7 bits: 281.1 E(85289): 2.7e-75 Smith-Waterman score: 1760; 73.1% identity (80.7% similar) in 383 aa overlap (1-383:1-340) 10 20 30 40 50 60 pF1KE2 MGLGPVFLLLAGIFPFAPPGAAAEPHSLRYNLTVLSWDGSVQSGFLTEVHLDGQPFLRCD :::: :.:.:: ::::::.:::::::::::: ::: :::::::::.: ::::::::: : NP_001 MGLGRVLLFLAVAFPFAPPAAAAEPHSLRYNLMVLSQDGSVQSGFLAEGHLDGQPFLRYD 10 20 30 40 50 60 70 80 90 100 110 120 pF1KE2 RQKCRAKPQGQWAEDVLGNKTWDRETRDLTGNGKDLRMTLAHIKDQKEGLHSLQEIRVCE ::: ::::::::::.::: :::: ::.::: ::.::: ::.:::::: :. NP_001 RQKRRAKPQGQWAENVLGAKTWDTETEDLTENGQDLRRTLTHIKDQK-GV---------- 70 80 90 100 130 140 150 160 170 180 pF1KE2 IHEDNSTRSSQHFYYDGELFLSQNLETEEWTMPQSSRAQTLAMNVRNFLKEDAMKTKTHY ::::::::::::: :: ::::::::::: NP_001 --------------------------------PQSSRAQTLAMNVTNFWKEDAMKTKTHY 110 120 130 190 200 210 220 230 240 pF1KE2 HAMHADCLQELRRYLKSGVVLRRTVPPMVNVTRSEASEGNITVTCRASGFYPWNITLSWR .::.:::::.:.:::::::..::::::::::: ::.::::::::::::.::: ::::.:: NP_001 RAMQADCLQKLQRYLKSGVAIRRTVPPMVNVTCSEVSEGNITVTCRASSFYPRNITLTWR 140 150 160 170 180 190 250 260 270 280 290 300 pF1KE2 QDGVSLSHDTQQWGDVLPDGNGTYQTWVATRICQGEEQRFTCYMEHSGNHSTHPVPSGKV ::::::::.::::::::::::::::::::::: :::::::::::::::::.::::::::. NP_001 QDGVSLSHNTQQWGDVLPDGNGTYQTWVATRIRQGEEQRFTCYMEHSGNHGTHPVPSGKA 200 210 220 230 240 250 310 320 330 340 350 360 pF1KE2 LVLQSHWQTFHVSAVAAAAIFVIIIFYVRCCKKKTSAAEGPELVSLQVLDQHPVGTSDHR :::::. : ..: . .:::. : :::::::::::::::::::::::::::.::: NP_001 LVLQSQRTDFPYVSAAMPCFVIIIILCVPCCKKKTSAAEGPELVSLQVLDQHPVGTGDHR 260 270 280 290 300 310 370 380 pF1KE2 DATQLGFQPLMSDLGSTGSTEGT ::.::::::::: ::::::::: NP_001 DAAQLGFQPLMSATGSTGSTEGT 320 330 340 >>NP_001276083 (OMIM: 600169) MHC class I polypeptide-re (194 aa) initn: 1021 init1: 1021 opt: 1030 Z-score: 1186.4 bits: 227.3 E(85289): 2.4e-59 Smith-Waterman score: 1030; 81.4% identity (90.4% similar) in 188 aa overlap (143-330:6-191) 120 130 140 150 160 170 pF1KE2 LQEIRVCEIHEDNSTRSSQHFYYDGELFLSQNLETEEWTMPQSSRAQTLAMNVRNFLKED :.:. :. ::.. .. . . ::::::: NP_001 MGQRDQGLDRER-KGPQDDPGSYQGPERRNFLKED 10 20 30 180 190 200 210 220 230 pF1KE2 AMKTKTHYHAMHADCLQELRRYLKSGVVLRRTVPPMVNVTRSEASEGNITVTCRASGFYP :::::::::::::::::::::::.::::::::::::::::::::::::::::::::.::: NP_001 AMKTKTHYHAMHADCLQELRRYLESGVVLRRTVPPMVNVTRSEASEGNITVTCRASSFYP 40 50 60 70 80 90 240 250 260 270 280 290 pF1KE2 WNITLSWRQDGVSLSHDTQQWGDVLPDGNGTYQTWVATRICQGEEQRFTCYMEHSGNHST :: :.:::::::::::::::::::::::::::::::::::.:::::::::::::::::: NP_001 RNIILTWRQDGVSLSHDTQQWGDVLPDGNGTYQTWVATRICRGEEQRFTCYMEHSGNHST 100 110 120 130 140 150 300 310 320 330 340 350 pF1KE2 HPVPSGKVLVLQSHWQTFHVSAVAAAAIFVIIIFYVRCCKKKTSAAEGPELVSLQVLDQH :::::::::::::::::::::::::. . . .: : NP_001 HPVPSGKVLVLQSHWQTFHVSAVAAGCCY-FCYYYFLCPLL 160 170 180 190 360 370 380 pF1KE2 PVGTSDHRDATQLGFQPLMSDLGSTGSTEGT >>NP_001229971 (OMIM: 142840,177900,609423) HLA class I (366 aa) initn: 366 init1: 150 opt: 520 Z-score: 599.4 bits: 119.6 E(85289): 1.2e-26 Smith-Waterman score: 520; 30.2% identity (63.5% similar) in 351 aa overlap (6-340:9-342) 10 20 30 40 50 pF1KE2 MGLGPVFLLLAGIFPFAPPGAAAEPHSLRYNLTVLSWDGSVQSGFLTEVHLDGQPFL ..:::.: . .. : . ::.:: :..: : . :.. ..: :. NP_001 MRVMAPRALLLLLSGGLALTETWACS--HSMRYFDTAVSRPGRGEPRFISVGYVDDTQFV 10 20 30 40 50 60 70 80 90 100 110 pF1KE2 RCDRQKC--RAKPQGQWAEDVLGNKTWDRETRDLTGNGKDLRMTLAHIK---DQKE-GLH : : . :..:.. :.:. : . :::::.. ... :..: ... .:.: : : NP_001 RFDSDAASPRGEPRAPWVEQE-GPEYWDRETQNYKRQAQADRVSLRNLRGYYNQSEDGSH 60 70 80 90 100 110 120 130 140 150 160 170 pF1KE2 SLQEIRVCEIHEDNST-RSSQHFYYDGELFLSQNLETEEWTMPQSSRAQTLAMNVRNFLK .::.. :.. :. :. .. :::. ... : . . :: :.: :. .. : NP_001 TLQRMYGCDLGPDGRLLRGYDQSAYDGKDYIALNEDLRSWTA-----ADTAAQITQR--K 120 130 140 150 160 170 180 190 200 210 220 pF1KE2 EDAMKTKTHYHA-MHADCLQELRRYLKSGV-VLRRTVPPMVNVTRSEASEGNITVTCRAS .: .. . .: ... :.. :::::..: .:.:. :: ..::. :. . :. : : NP_001 LEAARAAEQLRAYLEGTCVEWLRRYLENGKETLQRAEPPKTHVTHHPLSDHEATLRCWAL 180 190 200 210 220 230 230 240 250 260 270 280 pF1KE2 GFYPWNITLSWRQDGVSLSHDTQQWGDVLPDGNGTYQTWVATRICQGEEQRFTCYMEHSG :::: .:::.:..:: . ..::. .. : :.::.: :.:. . .:.:::.::.:.: : NP_001 GFYPAEITLTWQRDGEDQTQDTELV-ETRPAGDGTFQKWAAVVVPSGQEQRYTCHMQHEG 240 250 260 270 280 290 300 310 320 330 340 pF1KE2 NH-----STHPV--PSGKVLVLQSHWQTFHVSAVAAAAIFVIIIFYVRCCKKKTSAAEGP . : .: :. .. . . .. : :: .:.. ... :..:.:...: NP_001 LQEPLTLSWEPSSQPTIPIMGIVAGLAVLVVLAVLGAVVTAMM------CRRKSSGGKGG 290 300 310 320 330 340 350 360 370 380 pF1KE2 ELVSLQVLDQHPVGTSDHRDATQLGFQPLMSDLGSTGSTEGT NP_001 SCSQAACSNSAQGSDESLITCKA 350 360 >>XP_016866297 (OMIM: 143010) PREDICTED: HLA class I his (399 aa) initn: 408 init1: 146 opt: 520 Z-score: 598.9 bits: 119.6 E(85289): 1.3e-26 Smith-Waterman score: 520; 30.8% identity (61.6% similar) in 344 aa overlap (11-340:54-379) 10 20 30 40 pF1KE2 MGLGPVFLLLAGIFPFAPPGAAAEPHSLRYNLTVLSWDGS : . : .:::. :::.: : .: : XP_016 SGWKRPLPGVERGRPGGGEGLGEPRREEGRADLSPSSPPGS----HSLKYFHTSVSRPGR 30 40 50 60 70 50 60 70 80 90 pF1KE2 VQSGFLTEVHLDGQPFLRCDRQKC--RAKPQGQWAEDVLGNKTWDRETRDLTGNGKDLRM . :.. ..: :.: : . : :.. : :. :.. ::::::. ... .:. XP_016 GEPRFISVGYVDDTQFVRFDNDAASPRMVPRAPWMEQE-GSEYWDRETRSARDTAQIFRV 80 90 100 110 120 130 100 110 120 130 140 150 pF1KE2 TLAHIK---DQKE-GLHSLQEIRVCEIHEDNS-TRSSQHFYYDGELFLSQNLETEEWTMP .: .. .:.: : :.:: .. ::. :. :. ..: :::. .:. : . . :: XP_016 NLRTLRGYYNQSEAGSHTLQWMHGCELGPDGRFLRGYEQFAYDGKDYLTLNEDLRSWT-- 140 150 160 170 180 190 160 170 180 190 200 210 pF1KE2 QSSRAQTLAMNVRNFLKEDAMKTKTHYHAMHAD-CLQELRRYLKSGV-VLRRTVPPMVNV : : .. . ..:: ... : .:. : :.. :..::..: .: . :: ..: XP_016 ----AVDTAAQISEQKSNDASEAE-HQRAYLEDTCVEWLHKYLEKGKETLLHLEPPKTHV 200 210 220 230 240 250 220 230 240 250 260 270 pF1KE2 TRSEASEGNITVTCRASGFYPWNITLSWRQDGVSLSHDTQQWGDVLPDGNGTYQTWVATR :. :. . :. : : :::: .:::.:.::: . ..::. .. : :.::.: :.:. XP_016 THHPISDHEATLRCWALGFYPAEITLTWQQDGEGHTQDTELV-ETRPAGDGTFQKWAAVV 260 270 280 290 300 310 280 290 300 310 320 pF1KE2 ICQGEEQRFTCYMEHSG-----NHSTHPVPSGKVLVLQSHWQTFHVSAVAAAAIFVIIIF . .:::::.::...: : . .:. . . .. ...:...:. . .:. XP_016 VPSGEEQRYTCHVQHEGLPEPVTLRWKPASQPTIPIVGIIAGLVLLGSVVSGAVVAAVIW 320 330 340 350 360 370 330 340 350 360 370 380 pF1KE2 YVRCCKKKTSAAEGPELVSLQVLDQHPVGTSDHRDATQLGFQPLMSDLGSTGSTEGT .::.:...: XP_016 -----RKKSSGGKGGSYSKAEWSDSAQGSESHSL 380 390 383 residues in 1 query sequences 60827320 residues in 85289 library sequences Tcomplib [36.3.4 Apr, 2011] (8 proc) start: Tue Nov 8 03:55:29 2016 done: Tue Nov 8 03:55:30 2016 Total Scan time: 5.550 Total Display time: 0.020 Function used was FASTA [36.3.4 Apr, 2011]