FASTA searches a protein or DNA sequence data bank 36.3.4 Apr, 2011 Please cite: W.R. Pearson & D.J. Lipman PNAS (1988) 85:2444-2448 Query: pF1KE1520, 118 aa 1>>>pF1KE1520 118 - 118 aa - 118 aa Library: human.CCDS.faa 18511270 residues in 32554 sequences Statistics: Expectation_n fit: rho(ln(x))= 6.6240+/-0.000534; mu= 6.1195+/- 0.033 mean_var=108.4326+/-21.282, 0's: 0 Z-trim(117.6): 4 B-trim: 0 in 0/54 Lambda= 0.123167 statistics sampled from 18415 (18418) to 18415 sequences Algorithm: FASTA (3.7 Nov 2010) [optimized] Parameters: BL50 matrix (15:-5), open/ext: -10/-2 ktup: 2, E-join: 1 (0.861), E-opt: 0.2 (0.566), width: 16 Scan time: 1.930 The best scores are: opt bits E(32554) CCDS6100.1 EIF4EBP1 gene_id:1978|Hs108|chr8 ( 118) 806 151.9 8.3e-38 CCDS7303.1 EIF4EBP2 gene_id:1979|Hs108|chr10 ( 120) 415 82.5 6.9e-17 CCDS4226.1 EIF4EBP3 gene_id:8637|Hs108|chr5 ( 100) 328 67.0 2.7e-12 >>CCDS6100.1 EIF4EBP1 gene_id:1978|Hs108|chr8 (118 aa) initn: 806 init1: 806 opt: 806 Z-score: 792.2 bits: 151.9 E(32554): 8.3e-38 Smith-Waterman score: 806; 100.0% identity (100.0% similar) in 118 aa overlap (1-118:1-118) 10 20 30 40 50 60 pF1KE1 MSGGSSCSQTPSRAIPATRRVVLGDGVQLPPGDYSTTPGGTLFSTTPGGTRIIYDRKFLM :::::::::::::::::::::::::::::::::::::::::::::::::::::::::::: CCDS61 MSGGSSCSQTPSRAIPATRRVVLGDGVQLPPGDYSTTPGGTLFSTTPGGTRIIYDRKFLM 10 20 30 40 50 60 70 80 90 100 110 pF1KE1 ECRNSPVTKTPPRDLPTIPGVTSPSSDEPPMEASQSHLRNSPEDKRAGGEESQFEMDI :::::::::::::::::::::::::::::::::::::::::::::::::::::::::: CCDS61 ECRNSPVTKTPPRDLPTIPGVTSPSSDEPPMEASQSHLRNSPEDKRAGGEESQFEMDI 70 80 90 100 110 >>CCDS7303.1 EIF4EBP2 gene_id:1979|Hs108|chr10 (120 aa) initn: 475 init1: 319 opt: 415 Z-score: 416.6 bits: 82.5 E(32554): 6.9e-17 Smith-Waterman score: 415; 57.1% identity (82.4% similar) in 119 aa overlap (2-118:4-120) 10 20 30 40 50 pF1KE1 MSGGSSCSQTPSRAIPATRRVVLGDGVQLPPGDYSTTPGGTLFSTTPGGTRIIYDRKF :.::. . . ::::: :: :...:..::: :: ::::::::::::::::::::::: CCDS73 MSSSAGSGHQPSQSRAIP-TRTVAISDAAQLPH-DYCTTPGGTLFSTTPGGTRIIYDRKF 10 20 30 40 50 60 70 80 90 100 110 pF1KE1 LMECRNSPVTKTPPRDLPTIPGVTSPSS--DEPPMEASQSHLRNSPEDKRAGGEESQFEM :.. ::::...::: ::.:::::::.. .. .:... . :. . :.: :...:::: CCDS73 LLDRRNSPMAQTPPCHLPNIPGVTSPGTLIEDSKVEVNNLNNLNNHDRKHAVGDDAQFEM 60 70 80 90 100 110 pF1KE1 DI :: CCDS73 DI 120 >>CCDS4226.1 EIF4EBP3 gene_id:8637|Hs108|chr5 (100 aa) initn: 379 init1: 295 opt: 328 Z-score: 334.3 bits: 67.0 E(32554): 2.7e-12 Smith-Waterman score: 330; 50.8% identity (66.9% similar) in 118 aa overlap (1-118:1-100) 10 20 30 40 50 60 pF1KE1 MSGGSSCSQTPSRAIPATRRVVLGDGVQLPPGDYSTTPGGTLFSTTPGGTRIIYDRKFLM :: ..:: : ::. : ::: :::::::::..:::::::::::::::. CCDS42 MSTSTSC---P---IPGGRD-------QLPDC-YSTTPGGTLYATTPGGTRIIYDRKFLL 10 20 30 40 70 80 90 100 110 pF1KE1 ECRNSPVTKTPPRDLPTIPGVTSPSSDEPPMEASQSHLRNSPEDKRAGGEESQFEMDI ::.:::...::: :: :::::.: : :. . . : .. ...:::::: CCDS42 ECKNSPIARTPPCCLPQIPGVTTP----PTAPLSKLEELKEQETEEEIPDDAQFEMDI 50 60 70 80 90 100 118 residues in 1 query sequences 18511270 residues in 32554 library sequences Tcomplib [36.3.4 Apr, 2011] (8 proc) start: Sun Nov 6 20:13:26 2016 done: Sun Nov 6 20:13:27 2016 Total Scan time: 1.930 Total Display time: -0.050 Function used was FASTA [36.3.4 Apr, 2011]