FASTA searches a protein or DNA sequence data bank 36.3.4 Apr, 2011 Please cite: W.R. Pearson & D.J. Lipman PNAS (1988) 85:2444-2448 Query: pF1KE1501, 283 aa 1>>>pF1KE1501 283 - 283 aa - 283 aa Library: human.CCDS.faa 18511270 residues in 32554 sequences Statistics: Expectation_n fit: rho(ln(x))= 5.6124+/-0.00075; mu= 16.0511+/- 0.045 mean_var=132.3174+/-24.763, 0's: 0 Z-trim(114.4): 61 B-trim: 22 in 1/50 Lambda= 0.111498 statistics sampled from 14948 (15010) to 14948 sequences Algorithm: FASTA (3.7 Nov 2010) [optimized] Parameters: BL50 matrix (15:-5), open/ext: -10/-2 ktup: 2, E-join: 1 (0.798), E-opt: 0.2 (0.461), width: 16 Scan time: 2.660 The best scores are: opt bits E(32554) CCDS44046.1 TNFRSF14 gene_id:8764|Hs108|chr1 ( 283) 2050 340.3 9.3e-94 CCDS13393.1 CD40 gene_id:958|Hs108|chr20 ( 277) 381 71.8 6.1e-13 CCDS13394.1 CD40 gene_id:958|Hs108|chr20 ( 203) 368 69.6 2.1e-12 CCDS145.1 TNFRSF1B gene_id:7133|Hs108|chr1 ( 461) 366 69.7 4.4e-12 CCDS13532.1 TNFRSF6B gene_id:8771|Hs108|chr20 ( 300) 352 67.2 1.6e-11 CCDS59233.1 LTBR gene_id:4055|Hs108|chr12 ( 416) 353 67.6 1.8e-11 CCDS8544.1 LTBR gene_id:4055|Hs108|chr12 ( 435) 350 67.1 2.5e-11 >>CCDS44046.1 TNFRSF14 gene_id:8764|Hs108|chr1 (283 aa) initn: 2050 init1: 2050 opt: 2050 Z-score: 1796.7 bits: 340.3 E(32554): 9.3e-94 Smith-Waterman score: 2050; 99.6% identity (100.0% similar) in 283 aa overlap (1-283:1-283) 10 20 30 40 50 60 pF1KE1 MEPPGDWGPPPWRSTPRTDVLRLVLYLTFLGAPCYAPALPSCKEDEYPVGSECCPKCSPG ::::::::::::::::.::::::::::::::::::::::::::::::::::::::::::: CCDS44 MEPPGDWGPPPWRSTPKTDVLRLVLYLTFLGAPCYAPALPSCKEDEYPVGSECCPKCSPG 10 20 30 40 50 60 70 80 90 100 110 120 pF1KE1 YRVKEACGELTGTVCEPCPPGTYIAHLNGLSKCLQCQMCDPAMGLRASRNCSRTENAVCG :::::::::::::::::::::::::::::::::::::::::::::::::::::::::::: CCDS44 YRVKEACGELTGTVCEPCPPGTYIAHLNGLSKCLQCQMCDPAMGLRASRNCSRTENAVCG 70 80 90 100 110 120 130 140 150 160 170 180 pF1KE1 CSPGHFCIVQDGDHCAACRAYATSSPGQRVQKGGTESQDTLCQNCPPGTFSPNGTLEECQ :::::::::::::::::::::::::::::::::::::::::::::::::::::::::::: CCDS44 CSPGHFCIVQDGDHCAACRAYATSSPGQRVQKGGTESQDTLCQNCPPGTFSPNGTLEECQ 130 140 150 160 170 180 190 200 210 220 230 240 pF1KE1 HQTKCSWLVTKAGAGTSSSHWVWWFLSGSLVIVIVCSTVGLIICVKRRKPRGDVVKVIVS :::::::::::::::::::::::::::::::::::::::::::::::::::::::::::: CCDS44 HQTKCSWLVTKAGAGTSSSHWVWWFLSGSLVIVIVCSTVGLIICVKRRKPRGDVVKVIVS 190 200 210 220 230 240 250 260 270 280 pF1KE1 VQRKRQEAEGEATVIEALQAPPDVTTVAVEETIPSFTGRSPNH ::::::::::::::::::::::::::::::::::::::::::: CCDS44 VQRKRQEAEGEATVIEALQAPPDVTTVAVEETIPSFTGRSPNH 250 260 270 280 >>CCDS13393.1 CD40 gene_id:958|Hs108|chr20 (277 aa) initn: 269 init1: 269 opt: 381 Z-score: 345.9 bits: 71.8 E(32554): 6.1e-13 Smith-Waterman score: 381; 31.9% identity (61.0% similar) in 182 aa overlap (21-197:6-182) 10 20 30 40 50 pF1KE1 MEPPGDWGPPPWRSTPRTDVLRLVLYLTFLGAPCYAPALPS-CKEDEYPVGSECCPKCSP :. ::. .: : : :. :.: .: ..:.:: :.: CCDS13 MVRLPLQCVLWGCLLTA--VHPEPPTACREKQYLINSQCCSLCQP 10 20 30 40 60 70 80 90 100 110 pF1KE1 GYRVKEACGELTGTVCEPCPPGTYIAHLNGLSKCLQCQMCDPAMGLRASRNCSRTENAVC : .. : :.: : : :: . .. : ..: : ..::: .:::.... . ...: CCDS13 GQKLVSDCTEFTETECLPCGESEFLDTWNRETHCHQHKYCDPNLGLRVQQKGTSETDTIC 50 60 70 80 90 100 120 130 140 150 160 170 pF1KE1 GCSPGHFCIVQDGDHCAACRAYATSSPGQRVQKGGTESQDTLCQNCPPGTFSP-NGTLEE : : : .. : .: . . ::: :.. .: .::.:. :: : :: ....:. CCDS13 TCEEGWHC---TSEACESCVLHRSCSPGFGVKQIATGVSDTICEPCPVGFFSNVSSAFEK 110 120 130 140 150 160 180 190 200 210 220 230 pF1KE1 CQHQTKC---SWLVTKAGAGTSSSHWVWWFLSGSLVIVIVCSTVGLIICVKRRKPRGDVV :. :.: . .: .::.. . CCDS13 CHPWTSCETKDLVVQQAGTNKTDVVCGPQDRLRALVVIPIIFGILFAILLVLVFIKKVAK 170 180 190 200 210 220 >>CCDS13394.1 CD40 gene_id:958|Hs108|chr20 (203 aa) initn: 290 init1: 215 opt: 368 Z-score: 336.1 bits: 69.6 E(32554): 2.1e-12 Smith-Waterman score: 368; 32.5% identity (60.8% similar) in 166 aa overlap (21-184:6-166) 10 20 30 40 50 pF1KE1 MEPPGDWGPPPWRSTPRTDVLRLVLYLTFLGAPCYAPALPS-CKEDEYPVGSECCPKCSP :. ::. .: : : :. :.: .: ..:.:: :.: CCDS13 MVRLPLQCVLWGCLLTA--VHPEPPTACREKQYLINSQCCSLCQP 10 20 30 40 60 70 80 90 100 110 pF1KE1 GYRVKEACGELTGTVCEPCPPGTYIAHLNGLSKCLQCQMCDPAMGLRASRNCSRTENAVC : .. : :.: : : :: . .. : ..: : ..::: .:::.... . ...: CCDS13 GQKLVSDCTEFTETECLPCGESEFLDTWNRETHCHQHKYCDPNLGLRVQQKGTSETDTIC 50 60 70 80 90 100 120 130 140 150 160 170 pF1KE1 GCSPGHFCIVQDGDHCAACRAYATSSPGQRVQKGGTESQDTLCQNCPPGTFSP-NGTLEE : : : .. : .: . . ::: :.. .: .::.:. :: : :: ....:. CCDS13 TCEEGWHCT---SEACESCVLHRSCSPGFGVKQIATGVSDTICEPCPVGFFSNVSSAFEK 110 120 130 140 150 160 180 190 200 210 220 230 pF1KE1 CQHQTKCSWLVTKAGAGTSSSHWVWWFLSGSLVIVIVCSTVGLIICVKRRKPRGDVVKVI :. :. CCDS13 CHPWTRSPGSAESPGGDPHHLRDPVCHPLGAGLYQKGGQEANQ 170 180 190 200 >>CCDS145.1 TNFRSF1B gene_id:7133|Hs108|chr1 (461 aa) initn: 347 init1: 206 opt: 366 Z-score: 330.3 bits: 69.7 E(32554): 4.4e-12 Smith-Waterman score: 366; 32.7% identity (58.2% similar) in 165 aa overlap (35-194:32-194) 10 20 30 40 50 60 pF1KE1 GDWGPPPWRSTPRTDVLRLVLYLTFLGAPCYAPALPS-CKEDEY--PVGSECCPKCSPGY ::: : :. :: ... :: ::::: CCDS14 APVAVWAALAVGLELWAAAHALPAQVAFTPYAPEPGSTCRLREYYDQTAQMCCSKCSPGQ 10 20 30 40 50 60 70 80 90 100 110 120 pF1KE1 RVKEACGELTGTVCEPCPPGTYIAHLNGLSKCLQC-QMCDPAMGLRASRNCSRTENAVCG ..: : . . :::. : .:: : . .::.: . :. . .. :.: .: .: CCDS14 HAKVFCTKTSDTVCDSCEDSTYTQLWNWVPECLSCGSRCSSDQ--VETQACTREQNRICT 70 80 90 100 110 130 140 150 160 170 pF1KE1 CSPGHFCIVQDGDHCAACRAYATSSPGQRVQKGGTESQDTLCQNCPPGTFS-PNGTLEEC : :: .: .. . : : :: : . :::..:..:. : ::::: ... . : CCDS14 CRPGWYCALSKQEGCRLCAPLRKCRPGFGVARPGTETSDVVCKPCAPGTFSNTTSSTDIC 120 130 140 150 160 170 180 190 200 210 220 230 pF1KE1 QHQTKCSWLVTKAGAGTSSSHWVWWFLSGSLVIVIVCSTVGLIICVKRRKPRGDVVKVIV . . :. .. ..: CCDS14 RPHQICNVVAIPGNASMDAVCTSTSPTRSMAPGAVHLPQPVSTRSQHTQPTPEPSTAPST 180 190 200 210 220 230 >>CCDS13532.1 TNFRSF6B gene_id:8771|Hs108|chr20 (300 aa) initn: 272 init1: 145 opt: 352 Z-score: 320.3 bits: 67.2 E(32554): 1.6e-11 Smith-Waterman score: 352; 34.7% identity (52.8% similar) in 193 aa overlap (16-200:7-189) 10 20 30 40 50 pF1KE1 MEPPGDWGPPPWRSTPRTDVLRLVLYL-TFLGAPCY--APALPSCKEDEYPVGSE-CCPK : ..: ::: : ..: .: . :. . .: . : . CCDS13 MRALEGPGLSLLCLVLALPALLPVPAVRGVAETPTYPWRDAETGERLVCAQ 10 20 30 40 50 60 70 80 90 100 110 pF1KE1 CSPGYRVKEACGELTGTVCEPCPPGTYIAHLNGLSKCLQCQ-MCDPAMGLRA--SRNCSR : :: :.. : . . :.: :::: : : : .: :. .: : : .: : CCDS13 CPPGTFVQRPCRRDSPTTCGPCPPRHYTQFWNYLERCRYCNVLC----GEREEEARACHA 60 70 80 90 100 120 130 140 150 160 170 pF1KE1 TENAVCGCSPGHFCIVQDGDHCAACRAYATSSPGQRVQKGGTESQDTLCQNCPPGTFSPN :.: .: : : : : . : .:. :: : :: ::.: :: ::::::: . CCDS13 THNRACRCRTGFFA------HAGFCLEHASCPPGAGVIAPGTPSQNTQCQPCPPGTFSAS 110 120 130 140 150 160 180 190 200 210 220 230 pF1KE1 GTL-EECQHQTKCSWLVTKAGAGTSSSHWVWWFLSGSLVIVIVCSTVGLIICVKRRKPRG .. :.:: . .:. : .. :::: CCDS13 SSSSEQCQPHRNCTALGLALNVPGSSSHDTLCTSCTGFPLSTRVPGAEECERAVIDFVAF 170 180 190 200 210 220 >>CCDS59233.1 LTBR gene_id:4055|Hs108|chr12 (416 aa) initn: 301 init1: 264 opt: 353 Z-score: 319.5 bits: 67.6 E(32554): 1.8e-11 Smith-Waterman score: 366; 26.4% identity (54.3% similar) in 254 aa overlap (30-261:12-262) 10 20 30 40 50 pF1KE1 MEPPGDWGPPPWRSTPRTDVLRLVLYLTFLGAPCYAPALPSCK--EDEY--PVGSECCPK : .: :: .:. : :: : :: . CCDS59 MEATGISLASQLKVPPYASENQTCRDQEKEYYEPQHRICCSR 10 20 30 40 60 70 80 90 100 110 pF1KE1 CSPGYRVKEACGELTGTVCEPCPPGTYIAHLNGLSKCLQCQMCDPAMGLRASRNCSRTEN : :: :. :... ::: : ..: : : :. : :. :::.:::. :. .. CCDS59 CPPGTYVSAKCSRIRDTVCATCAENSYNEHWNYLTICQLCRPCDPVMGLEEIAPCTSKRK 50 60 70 80 90 100 120 130 140 150 160 170 pF1KE1 AVCGCSPGHFCIVQDGDHCAACRAYATSSPGQRVQ-KGGTESQDTLCQNCPPGTFSPNGT . : :.:: :: . . :. :. . :: ... : . . .. : : : :. ... CCDS59 TQCRCQPGMFCAAWALE-CTHCELLSDCPPGTEAELKDEVGKGNNHCVPCKAGHFQNTSS 110 120 130 140 150 160 180 190 200 210 220 pF1KE1 -LEECQHQTKC-SWLVTKAGAGTSSSHW--------VWWFLSGSLVIVIVCSTVGLII-- .:: .:.: . ...:. ::..: . .::..... : ..... CCDS59 PSARCQPHTRCENQGLVEAAPGTAQSDTTCKNPLEPLPPEMSGTMLMLAVLLPLAFFLLL 170 180 190 200 210 220 230 240 250 260 270 pF1KE1 -----CVKRRKPRGDVVKVIVSVQRKRQEAEGEATVIEALQAPPDVTTVAVEETIPSFTG :. . .: .. . . :. ..: ..:: : . . : CCDS59 ATVFSCIWKSHP--SLCRKLGSLLKRRPQGEGPNPVAGSWEPPKAHPYFPDLVQPLLPIS 230 240 250 260 270 280 pF1KE1 RSPNH CCDS59 GDVSPVSTGLPAAPVLEAGVPQQQSPLDLTREPQLEPGEQSQVAHGTNGIHVTGGSMTIT 280 290 300 310 320 330 >>CCDS8544.1 LTBR gene_id:4055|Hs108|chr12 (435 aa) initn: 301 init1: 264 opt: 350 Z-score: 316.7 bits: 67.1 E(32554): 2.5e-11 Smith-Waterman score: 367; 27.0% identity (52.7% similar) in 281 aa overlap (11-261:4-281) 10 20 30 40 pF1KE1 MEPPGDWGPPPW-RSTPRTDVLRLVLYLTFLGA-------PCYAPALPSCK--EDEY--P :: :.: ::: : : : : :: .:. : :: : CCDS85 MLLPWATSAPGLAWGPLVLGLFGLLAASQPQAVPPYASENQTCRDQEKEYYEP 10 20 30 40 50 50 60 70 80 90 100 pF1KE1 VGSECCPKCSPGYRVKEACGELTGTVCEPCPPGTYIAHLNGLSKCLQCQMCDPAMGLRAS :: .: :: :. :... ::: : ..: : : :. : :. :::.:::. CCDS85 QHRICCSRCPPGTYVSAKCSRIRDTVCATCAENSYNEHWNYLTICQLCRPCDPVMGLEEI 60 70 80 90 100 110 110 120 130 140 150 160 pF1KE1 RNCSRTENAVCGCSPGHFCIVQDGDHCAACRAYATSSPGQRVQ-KGGTESQDTLCQNCPP :. ... : :.:: :: . . .:. :. . :: ... : . . .. : : CCDS85 APCTSKRKTQCRCQPGMFCAAW-ALECTHCELLSDCPPGTEAELKDEVGKGNNHCVPCKA 120 130 140 150 160 170 170 180 190 200 210 pF1KE1 GTFSPNGT-LEECQHQTKC-SWLVTKAGAGTSSSHW--------VWWFLSGSLVIVIVCS : :. ... .:: .:.: . ...:. ::..: . .::..... : CCDS85 GHFQNTSSPSARCQPHTRCENQGLVEAAPGTAQSDTTCKNPLEPLPPEMSGTMLMLAVLL 180 190 200 210 220 230 220 230 240 250 260 270 pF1KE1 TVGLII-------CVKRRKPRGDVVKVIVSVQRKRQEAEGEATVIEALQAPPDVTTVAVE ..... :. . .: .. . . :. ..: ..:: : . . : CCDS85 PLAFFLLLATVFSCIWKSHP--SLCRKLGSLLKRRPQGEGPNPVAGSWEPPKAHPYFPDL 240 250 260 270 280 290 280 pF1KE1 ETIPSFTGRSPNH CCDS85 VQPLLPISGDVSPVSTGLPAAPVLEAGVPQQQSPLDLTREPQLEPGEQSQVAHGTNGIHV 300 310 320 330 340 350 283 residues in 1 query sequences 18511270 residues in 32554 library sequences Tcomplib [36.3.4 Apr, 2011] (8 proc) start: Sun Nov 6 20:15:03 2016 done: Sun Nov 6 20:15:03 2016 Total Scan time: 2.660 Total Display time: 0.000 Function used was FASTA [36.3.4 Apr, 2011]