(Circular) (Six-base) MAPSORT of: pFN21AB3509.seq Check: 8502 from: 1 to: 5803 pFN21AB3509 5803 bp With 182 enzymes: SgfI * October 20, 2009 10:53 .. AatII G_ACGT'C Cuts at: 278 331 414 600 1536 3613 278 Size: 53 83 186 936 2077 2468 Fragments arranged by size: 2468 2077 936 186 83 53 AccI GT'mk_AC Cuts at: 1937 3146 1937 Size: 1209 4594 Acc65I G'GTAC_C Cuts at: 3124 3124 Size: 5803 AclI AA'CG_TT Cuts at: 1563 3930 4303 1563 Size: 2367 373 3063 Fragments arranged by size: 3063 2367 373 AcuI CTGAAGnnnnnnnnnnnnnn_nn' Cuts at: 1632 2232 3866 5250 5518 1632 Size: 600 1634 1384 268 1917 Fragments arranged by size: 1917 1634 1384 600 268 AflII C'TTAA_G Cuts at: 820 1017 820 Size: 197 5606 AflIII A'CryG_T Cuts at: 1203 4702 5679 1203 Size: 3499 977 1327 Fragments arranged by size: 3499 1327 977 AgeI A'CCGG_T Cuts at: 4634 4634 Size: 5803 AhdI GACnn_n'nnGTC Cuts at: 2384 4532 2384 Size: 2148 3655 AleI CACnn'nnGTG Cuts at: 1166 2594 1166 Size: 1428 4375 AlfI GCAnnnnnnTGCnnnnnnnnnn_nn' Cuts at: 1184 1184 Size: 5803 AlwNI CAG_nnn'CTG Cuts at: 3546 5118 3546 Size: 1572 4231 ApaI G_GGCC'C Cuts at: 2016 2016 Size: 5803 ApaLI G'TGCA_C Cuts at: 2597 3860 5016 2597 Size: 1263 1156 3384 Fragments arranged by size: 3384 1263 1156 ApoI r'AATT_y Cuts at: 1493 2139 2335 2681 2761 3112 3338 3490 5599 Size: 646 196 346 80 351 226 152 2109 Cuts at: 5599 1493 Size: 1697 Fragments arranged by size: 2109 1697 646 351 346 226 196 152 80 AseI AT'TA_AT Cuts at: 160 1032 4357 160 Size: 872 3325 1606 Fragments arranged by size: 3325 1606 872 AsiSI GCG_AT'CGC Cuts at: 2001 2001 Size: 5803 AvaI C'yCGr_G Cuts at: 1870 1943 3128 1870 Size: 73 1185 4545 Fragments arranged by size: 4545 1185 73 BamHI G'GATC_C Cuts at: 3133 3500 3133 Size: 367 5436 BanI G'GyrC_C Cuts at: 618 943 1160 1787 3124 4579 618 Size: 325 217 627 1337 1455 1842 Fragments arranged by size: 1842 1455 1337 627 325 217 BanII G_rGCy'C Cuts at: 1391 2016 3122 1391 Size: 625 1106 4072 Fragments arranged by size: 4072 1106 625 BbsI GAAGACnn'nnnn_ Cuts at: 928 1899 2309 928 Size: 971 410 4422 Fragments arranged by size: 4422 971 410 BcgI CGAnnnnnnTGCnnnnnnnnnn_nn' Cuts at: 1903 1937 3994 4028 1903 Size: 34 2057 34 3678 Fragments arranged by size: 3678 2057 34 34 BciVI GTATCCnnnnn_n' Cuts at: 3695 4905 3695 Size: 1210 4593 BclI T'GATC_A Cuts at: 1548 1548 Size: 5803 BglI GCCn_nnn'nGGC Cuts at: 136 243 365 436 1067 1672 4414 136 Size: 107 122 71 631 605 2742 1525 Fragments arranged by size: 2742 1525 631 605 122 107 71 BglII A'GATC_T Cuts at: 5798 5798 Size: 5803 BlpI GC'TnA_GC Cuts at: 3220 3220 Size: 5803 Bme1580I G_kGCm'C Cuts at: 1790 2016 2601 3864 5020 1790 Size: 226 585 1263 1156 2573 Fragments arranged by size: 2573 1263 1156 585 226 BmgBI CAC'GTC Cuts at: 1318 1318 Size: 5803 BmrI ACTGGGnnnn_n' Cuts at: 442 858 911 994 1393 1417 3534 4492 442 Size: 416 53 83 399 24 2117 958 1753 Fragments arranged by size: 2117 1753 958 416 399 83 53 24 BmtI G_CTAG'C Cuts at: 1056 1056 Size: 5803 BpmI CTGGAGnnnnnnnnnnnnnn_nn' Cuts at: 1239 2247 2868 4463 1239 Size: 1008 621 1595 2579 Fragments arranged by size: 2579 1595 1008 621 BpuEI CTTGAGnnnnnnnnnnnnnn_nn' Cuts at: 3928 4793 5091 3928 Size: 865 298 4640 Fragments arranged by size: 4640 865 298 BsaI GGTCTCn'nnnn_ Cuts at: 882 1499 2038 2816 4466 882 Size: 617 539 778 1650 2219 Fragments arranged by size: 2219 1650 778 617 539 BsaAI yAC'GTr Cuts at: 493 1204 3594 493 Size: 711 2390 2702 Fragments arranged by size: 2702 2390 711 BsaBI GATnn'nnATC Cuts at: 5797 5797 Size: 5803 BsaHI Gr'CG_yC Cuts at: 275 328 411 597 1533 3610 3992 4627 275 Size: 53 83 186 936 2077 382 635 1451 Fragments arranged by size: 2077 1451 936 635 382 186 83 53 BsaWI w'CCGG_w Cuts at: 2577 4236 4634 4908 5055 5466 2577 Size: 1659 398 274 147 411 2914 Fragments arranged by size: 2914 1659 411 398 274 147 BsaXI ACnnnnnCTCCnnnnnnn_nnn' Cuts at: 1178 1208 1373 1403 1178 Size: 30 165 30 5578 Fragments arranged by size: 5578 165 30 30 BseRI GAGGAGnnnnnnnn_nn' Cuts at: 1186 2210 1186 Size: 1024 4779 BseYI C'CCAG_C Cuts at: 2009 2044 5006 5502 2009 Size: 35 2962 496 2310 Fragments arranged by size: 2962 2310 496 35 BsgI GTGCAGnnnnnnnnnnnnnn_nn' Cuts at: 1163 1736 2519 2814 1163 Size: 573 783 295 4152 Fragments arranged by size: 4152 783 573 295 BsiEI CG_ry'CG Cuts at: 1540 1815 2001 3253 4014 5042 1540 Size: 275 186 1252 761 1028 2301 Fragments arranged by size: 2301 1252 1028 761 275 186 BsiHKAI G_wGCw'C Cuts at: 2601 3864 3949 5020 2601 Size: 1263 85 1071 3384 Fragments arranged by size: 3384 1263 1071 85 BsmI GAATG_Cn' Cuts at: 2051 3314 3407 2051 Size: 1263 93 4447 Fragments arranged by size: 4447 1263 93 Bsp1286I G_dGCh'C Cuts at: 1391 1790 2016 2601 3122 3864 3949 5020 1391 Size: 399 226 585 521 742 85 1071 2174 Fragments arranged by size: 2174 1071 742 585 521 399 226 85 BspEI T'CCGG_A Cuts at: 5466 5466 Size: 5803 BspHI T'CATG_A Cuts at: 3692 5422 3692 Size: 1730 4073 BspMI ACCTGCnnnn'nnnn_ Cuts at: 844 3158 844 Size: 2314 3489 BsrBI CCG'CTC Cuts at: 1394 1823 2200 3690 1394 Size: 429 377 1490 3507 Fragments arranged by size: 3507 1490 429 377 BsrDI GCAATG_nn' Cuts at: 65 1248 2538 2889 3052 4298 4472 65 Size: 1183 1290 351 163 1246 174 1396 Fragments arranged by size: 1396 1290 1246 1183 351 174 163 BsrFI r'CCGG_y Cuts at: 1700 1810 2318 4447 4634 1700 Size: 110 508 2129 187 2869 Fragments arranged by size: 2869 2129 508 187 110 BsrGI T'GTAC_A Cuts at: 96 96 Size: 5803 BssHII G'CGCG_C Cuts at: 1925 1925 Size: 5803 BssSI C'ACGA_G Cuts at: 3863 4875 3863 Size: 1012 4791 BstAPI GCAn_nnn'nTGC Cuts at: 794 794 Size: 5803 BstBI TT'CG_AA Cuts at: 4607 4607 Size: 5803 BstEII G'GTnAC_C Cuts at: 1184 2071 2321 1184 Size: 887 250 4666 Fragments arranged by size: 4666 887 250 BstYI r'GATC_y Cuts at: 1972 2022 2728 3133 3500 3885 3902 5354 5440 Size: 50 706 405 367 385 17 1452 86 Cuts at: 5440 5452 5798 1972 Size: 12 346 1977 Fragments arranged by size: 1977 1452 706 405 385 367 346 86 50 17 12 BtgI C'CryG_G Cuts at: 513 1065 2004 2265 513 Size: 552 939 261 4051 Fragments arranged by size: 4051 939 552 261 BtgZI GCGATGnnnnnnnnnn'nnnn_ Cuts at: 487 1170 1226 487 Size: 683 56 5064 Fragments arranged by size: 5064 683 56 BtsI GCAGTG_nn' Cuts at: 2208 3319 4113 4133 2208 Size: 1111 794 20 3878 Fragments arranged by size: 3878 1111 794 20 ClaI AT'CG_AT Cuts at: 1554 1554 Size: 5803 CspCI CAAnnnnnGTGGnnnnnnnnnn_nn' Cuts at: 529 564 529 Size: 35 5768 DraI TTT'AAA Cuts at: 3107 3107 Size: 5803 DraIII CAC_nnn'GTG Cuts at: 2828 2828 Size: 5803 DrdI GACnn_nn'nnGTC Cuts at: 809 1316 4810 809 Size: 507 3494 1802 Fragments arranged by size: 3494 1802 507 EaeI y'GGCC_r Cuts at: 8 62 1487 1537 1812 1830 3250 4139 5768 Size: 54 1425 50 275 18 1420 889 1629 Cuts at: 5768 8 Size: 43 Fragments arranged by size: 1629 1425 1420 889 275 54 50 43 18 EagI C'GGCC_G Cuts at: 1537 1812 3250 1537 Size: 275 1438 4090 Fragments arranged by size: 4090 1438 275 EarI CTCTTCn'nnn_ Cuts at: 1353 3733 1353 Size: 2380 3423 EciI GGCGGAnnnnnnnnn_nn' Cuts at: 387 1451 1589 4390 4764 4910 387 Size: 1064 138 2801 374 146 1280 Fragments arranged by size: 2801 1280 1064 374 146 138 Eco57MI CTGrAGnnnnnnnnnnnnnn_nn' Cuts at: 1239 1632 2232 2247 2868 3866 4463 5250 5518 Size: 393 600 15 621 998 597 787 268 Cuts at: 5518 1239 Size: 1524 Fragments arranged by size: 1524 998 787 621 600 597 393 268 15 EcoO109I rG'GnC_Cy Cuts at: 2222 2294 2222 Size: 72 5731 EcoRI G'AATT_C Cuts at: 3112 3490 3112 Size: 378 5425 FalI AAGnnnnnCTTnnnnnnnn_nnnnn' Cuts at: 2302 2302 Size: 5803 FspI TGC'GCA Cuts at: 2348 4309 2348 Size: 1961 3842 HaeII r_GCGC'y Cuts at: 1678 4950 1678 Size: 3272 2531 Hin4I GAynnnnnvTCnnnnnnnn_nnnnn' Cuts at: 1373 1405 1540 1572 2370 2402 2794 2826 4444 Size: 32 135 32 798 32 392 32 1618 Cuts at: 4444 4476 4518 4550 1373 Size: 32 42 32 2626 Fragments arranged by size: 2626 1618 798 392 135 42 32 32 32 32 32 32 HincII GTy'rAC Cuts at: 669 1657 1938 3147 3393 669 Size: 988 281 1209 246 3079 Fragments arranged by size: 3079 1209 988 281 246 HindIII A'AGCT_T Cuts at: 748 748 Size: 5803 HpaI GTT'AAC Cuts at: 3393 3393 Size: 5803 KpnI G_GTAC'C Cuts at: 3128 3128 Size: 5803 MfeI C'AATT_G Cuts at: 3402 3402 Size: 5803 MluI A'CGCG_T Cuts at: 5679 5679 Size: 5803 MmeI TCCrACnnnnnnnnnnnnnnnnnn_nn' Cuts at: 1305 2401 4917 5101 1305 Size: 1096 2516 184 2007 Fragments arranged by size: 2516 2007 1096 184 MscI TGG'CCA Cuts at: 10 64 1489 1832 10 Size: 54 1425 343 3981 Fragments arranged by size: 3981 1425 343 54 MslI CAynn'nnrTG Cuts at: 518 1166 2594 2618 3761 4120 4279 518 Size: 648 1428 24 1143 359 159 2042 Fragments arranged by size: 2042 1428 1143 648 359 159 24 MspA1I CmG'CkG Cuts at: 1606 2147 3219 3896 5044 5289 1606 Size: 541 1072 677 1148 245 2120 Fragments arranged by size: 2120 1148 1072 677 541 245 NcoI C'CATG_G Cuts at: 513 1065 2004 2265 513 Size: 552 939 261 4051 Fragments arranged by size: 4051 939 552 261 NdeI CA'TA_TG Cuts at: 387 387 Size: 5803 NheI G'CTAG_C Cuts at: 1052 1052 Size: 5803 NotI GC'GGCC_GC Cuts at: 3250 3250 Size: 5803 NspI r_CATG'y Cuts at: 1132 1229 2480 3161 4706 1132 Size: 97 1251 681 1545 2229 Fragments arranged by size: 2229 1545 1251 681 97 PasI CC'CwG_GG Cuts at: 1348 1348 Size: 5803 PciI A'CATG_T Cuts at: 4702 4702 Size: 5803 PflMI CCAn_nnn'nTGG Cuts at: 1108 2123 1108 Size: 1015 4788 PfoI T'CCnGG_A Cuts at: 2116 2116 Size: 5803 PmeI GTTT'AAAC Cuts at: 3107 3107 Size: 5803 PpiI GAACnnnnnCTCnnnnnnnn_nnnnn' Cuts at: 3872 3904 5385 5417 3872 Size: 32 1481 32 4258 Fragments arranged by size: 4258 1481 32 32 PpuMI rG'GwC_Cy Cuts at: 2222 2222 Size: 5803 PshAI GACnn'nnGTC Cuts at: 1613 1613 Size: 5803 PsiI TTA'TAA Cuts at: 3373 3373 Size: 5803 PspOMI G'GGCC_C Cuts at: 2012 2012 Size: 5803 PstI C_TGCA'G Cuts at: 830 2152 3155 830 Size: 1322 1003 3478 Fragments arranged by size: 3478 1322 1003 PvuI CG_AT'CG Cuts at: 2001 2001 Size: 5803 PvuII CAG'CTG Cuts at: 2147 2147 Size: 5803 SalI G'TCGA_C Cuts at: 1936 3145 1936 Size: 1209 4594 SbfI CC_TGCA'GG Cuts at: 3155 3155 Size: 5803 ScaI AGT'ACT Cuts at: 4051 5763 4051 Size: 1712 4091 SfcI C'TryA_G Cuts at: 826 1045 2148 3151 4286 4967 5158 826 Size: 219 1103 1003 1135 681 191 1471 Fragments arranged by size: 1471 1135 1103 1003 681 219 191 SgfI GCG_AT'CGC Cuts at: 2001 2001 Size: 5803 SgrAI Cr'CCGG_yG Cuts at: 1700 1700 Size: 5803 SmaI CCC'GGG Cuts at: 1872 3130 1872 Size: 1258 4545 SmlI C'TyrA_G Cuts at: 820 1017 1943 3907 4808 5070 820 Size: 197 926 1964 901 262 1553 Fragments arranged by size: 1964 1553 926 901 262 197 SnaBI TAC'GTA Cuts at: 493 3594 493 Size: 3101 2702 SpeI A'CTAG_T Cuts at: 152 152 Size: 5803 SphI G_CATG'C Cuts at: 1132 3161 1132 Size: 2029 3774 SspI AAT'ATT Cuts at: 5 52 2428 3727 5 Size: 47 2376 1299 2081 Fragments arranged by size: 2376 2081 1299 47 StuI AGG'CCT Cuts at: 1517 1517 Size: 5803 StyI C'CwwG_G Cuts at: 513 1065 2004 2265 3242 513 Size: 552 939 261 977 3074 Fragments arranged by size: 3074 977 939 552 261 TaqII GACCGAnnnnnnnnn_nn' Cuts at: 325 1580 2340 3830 3847 4000 4185 4630 325 Size: 1255 760 1490 17 153 185 445 1498 Fragments arranged by size: 1498 1490 1255 760 445 185 153 17 TatI w'GTAC_w Cuts at: 96 370 450 483 534 1977 4049 5761 96 Size: 274 80 33 51 1443 2072 1712 138 Fragments arranged by size: 2072 1712 1443 274 138 80 51 33 TstI CACnnnnnnTCCnnnnnnn_nnnnn' Cuts at: 5763 5795 5763 Size: 32 5771 Tth111I GACn'n_nGTC Cuts at: 1316 1316 Size: 5803 XbaI T'CTAG_A Cuts at: 3139 3139 Size: 5803 XhoI C'TCGA_G Cuts at: 1943 1943 Size: 5803 XmaI C'CCGG_G Cuts at: 1870 3128 1870 Size: 1258 4545 XmnI GAAnn'nnTTC Cuts at: 3932 3932 Size: 5803 ZraI GAC'GTC Cuts at: 276 329 412 598 1534 3611 276 Size: 53 83 186 936 2077 2468 Fragments arranged by size: 2468 2077 936 186 83 53 Enzymes that do cut: AatII AccI Acc65I AclI AcuI AflII AflIII AgeI AhdI AleI AlfI AlwNI ApaI ApaLI ApoI AseI AsiSI AvaI BamHI BanI BanII BbsI BcgI BciVI BclI BglI BglII BlpI Bme1580I BmgBI BmrI BmtI BpmI BpuEI BsaI BsaAI BsaBI BsaHI BsaWI BsaXI BseRI BseYI BsgI BsiEI BsiHKAI BsmI Bsp1286I BspEI BspHI BspMI BsrBI BsrDI BsrFI BsrGI BssHII BssSI BstAPI BstBI BstEII BstYI BtgI BtgZI BtsI ClaI CspCI DraI DraIII DrdI EaeI EagI EarI EciI Eco57MI EcoO109I EcoRI FalI FspI HaeII Hin4I HincII HindIII HpaI KpnI MfeI MluI MmeI MscI MslI MspA1I NcoI NdeI NheI NotI NspI PasI PciI PflMI PfoI PmeI PpiI PpuMI PshAI PsiI PspOMI PstI PvuI PvuII SalI SbfI ScaI SfcI SgfI SgrAI SmaI SmlI SnaBI SpeI SphI SspI StuI StyI TaqII TatI TstI Tth111I XbaI XhoI XmaI XmnI ZraI Enzymes that do not cut: AarI AfeI AloI AscI AvrII BaeI BbeI BbvCI BfrBI BplI Bpu10I BsiWI BsmBI BstXI BstZ17I Bsu36I EcoICRI EcoNI EcoRV FseI FspAI KasI NaeI NarI NgoMIV NruI NsiI PacI PmlI PspXI PsrI RsrII SacI SacII SanDI SapI SexAI SfiI SfoI SrfI SwaI XcmI