FASTA searches a protein or DNA sequence data bank 36.3.4 Apr, 2011 Please cite: W.R. Pearson & D.J. Lipman PNAS (1988) 85:2444-2448 Query: pF1KE1634, 149 aa 1>>>pF1KE1634 149 - 149 aa - 149 aa Library: /omim/omim.rfq.tfa 60827320 residues in 85289 sequences Statistics: Expectation_n fit: rho(ln(x))= 4.9908+/-0.000318; mu= 13.4847+/- 0.020 mean_var=63.3334+/-12.381, 0's: 0 Z-trim(116.3): 48 B-trim: 0 in 0/50 Lambda= 0.161160 statistics sampled from 27271 (27324) to 27271 sequences Algorithm: FASTA (3.7 Nov 2010) [optimized] Parameters: BL50 matrix (15:-5), open/ext: -10/-2 ktup: 2, E-join: 1 (0.712), E-opt: 0.2 (0.32), width: 16 Scan time: 4.800 The best scores are: opt bits E(85289) XP_016882611 (OMIM: 602565) PREDICTED: C-C motif c ( 149) 1017 244.4 5e-65 NP_001188288 (OMIM: 602565) C-C motif chemokine 25 ( 149) 1017 244.4 5e-65 NP_005615 (OMIM: 602565) C-C motif chemokine 25 is ( 150) 1005 241.6 3.5e-64 XP_016882609 (OMIM: 602565) PREDICTED: C-C motif c ( 150) 1005 241.6 3.5e-64 XP_016882610 (OMIM: 602565) PREDICTED: C-C motif c ( 150) 1005 241.6 3.5e-64 XP_011526479 (OMIM: 602565) PREDICTED: C-C motif c ( 150) 1005 241.6 3.5e-64 XP_016882608 (OMIM: 602565) PREDICTED: C-C motif c ( 210) 1005 241.7 4.5e-64 XP_016867161 (OMIM: 604697) PREDICTED: C-C motif c ( 94) 160 45.0 3.3e-05 NP_006063 (OMIM: 604697) C-C motif chemokine 26 pr ( 94) 160 45.0 3.3e-05 XP_016867160 (OMIM: 604697) PREDICTED: C-C motif c ( 148) 160 45.2 4.8e-05 XP_011516306 (OMIM: 602737) PREDICTED: C-C motif c ( 145) 152 43.3 0.00017 NP_002980 (OMIM: 602737) C-C motif chemokine 21 pr ( 134) 151 43.0 0.00019 NP_001288803 (OMIM: 605240) C-C motif chemokine 28 ( 127) 146 41.9 0.0004 NP_683513 (OMIM: 605240) C-C motif chemokine 28 is ( 127) 146 41.9 0.0004 NP_001288802 (OMIM: 605240) C-C motif chemokine 28 ( 127) 146 41.9 0.0004 XP_011514761 (OMIM: 602495) PREDICTED: C-C motif c ( 119) 129 37.9 0.0059 NP_002982 (OMIM: 602495) C-C motif chemokine 24 pr ( 119) 129 37.9 0.0059 XP_011514762 (OMIM: 602495) PREDICTED: C-C motif c ( 119) 129 37.9 0.0059 NP_002977 (OMIM: 600807,601156,609423) eotaxin pre ( 97) 127 37.4 0.0069 >>XP_016882611 (OMIM: 602565) PREDICTED: C-C motif chemo (149 aa) initn: 1017 init1: 1017 opt: 1017 Z-score: 1288.5 bits: 244.4 E(85289): 5e-65 Smith-Waterman score: 1017; 100.0% identity (100.0% similar) in 149 aa overlap (1-149:1-149) 10 20 30 40 50 60 pF1KE1 MNLWLLACLVAGFLGAWAPAVHTQGVFEDCCLAYHYPIGWAVLRRAWTYRIQEVSGSCNL :::::::::::::::::::::::::::::::::::::::::::::::::::::::::::: XP_016 MNLWLLACLVAGFLGAWAPAVHTQGVFEDCCLAYHYPIGWAVLRRAWTYRIQEVSGSCNL 10 20 30 40 50 60 70 80 90 100 110 120 pF1KE1 PAAIFYLPKRHRKVCGNPKSREVQRAMKLLDARNKVFAKLHHNTQTFQGPHAVKKLSSGN :::::::::::::::::::::::::::::::::::::::::::::::::::::::::::: XP_016 PAAIFYLPKRHRKVCGNPKSREVQRAMKLLDARNKVFAKLHHNTQTFQGPHAVKKLSSGN 70 80 90 100 110 120 130 140 pF1KE1 SKLSSSKFSNPISSSKRNVSLLISANSGL ::::::::::::::::::::::::::::: XP_016 SKLSSSKFSNPISSSKRNVSLLISANSGL 130 140 >>NP_001188288 (OMIM: 602565) C-C motif chemokine 25 iso (149 aa) initn: 1017 init1: 1017 opt: 1017 Z-score: 1288.5 bits: 244.4 E(85289): 5e-65 Smith-Waterman score: 1017; 100.0% identity (100.0% similar) in 149 aa overlap (1-149:1-149) 10 20 30 40 50 60 pF1KE1 MNLWLLACLVAGFLGAWAPAVHTQGVFEDCCLAYHYPIGWAVLRRAWTYRIQEVSGSCNL :::::::::::::::::::::::::::::::::::::::::::::::::::::::::::: NP_001 MNLWLLACLVAGFLGAWAPAVHTQGVFEDCCLAYHYPIGWAVLRRAWTYRIQEVSGSCNL 10 20 30 40 50 60 70 80 90 100 110 120 pF1KE1 PAAIFYLPKRHRKVCGNPKSREVQRAMKLLDARNKVFAKLHHNTQTFQGPHAVKKLSSGN :::::::::::::::::::::::::::::::::::::::::::::::::::::::::::: NP_001 PAAIFYLPKRHRKVCGNPKSREVQRAMKLLDARNKVFAKLHHNTQTFQGPHAVKKLSSGN 70 80 90 100 110 120 130 140 pF1KE1 SKLSSSKFSNPISSSKRNVSLLISANSGL ::::::::::::::::::::::::::::: NP_001 SKLSSSKFSNPISSSKRNVSLLISANSGL 130 140 >>NP_005615 (OMIM: 602565) C-C motif chemokine 25 isofor (150 aa) initn: 771 init1: 771 opt: 1005 Z-score: 1273.4 bits: 241.6 E(85289): 3.5e-64 Smith-Waterman score: 1005; 99.3% identity (99.3% similar) in 150 aa overlap (1-149:1-150) 10 20 30 40 50 60 pF1KE1 MNLWLLACLVAGFLGAWAPAVHTQGVFEDCCLAYHYPIGWAVLRRAWTYRIQEVSGSCNL :::::::::::::::::::::::::::::::::::::::::::::::::::::::::::: NP_005 MNLWLLACLVAGFLGAWAPAVHTQGVFEDCCLAYHYPIGWAVLRRAWTYRIQEVSGSCNL 10 20 30 40 50 60 70 80 90 100 110 pF1KE1 PAAIFYLPKRHRKVCGNPKSREVQRAMKLLDARNKVFAKLHHNTQTFQ-GPHAVKKLSSG :::::::::::::::::::::::::::::::::::::::::::::::: ::::::::::: NP_005 PAAIFYLPKRHRKVCGNPKSREVQRAMKLLDARNKVFAKLHHNTQTFQAGPHAVKKLSSG 70 80 90 100 110 120 120 130 140 pF1KE1 NSKLSSSKFSNPISSSKRNVSLLISANSGL :::::::::::::::::::::::::::::: NP_005 NSKLSSSKFSNPISSSKRNVSLLISANSGL 130 140 150 >>XP_016882609 (OMIM: 602565) PREDICTED: C-C motif chemo (150 aa) initn: 771 init1: 771 opt: 1005 Z-score: 1273.4 bits: 241.6 E(85289): 3.5e-64 Smith-Waterman score: 1005; 99.3% identity (99.3% similar) in 150 aa overlap (1-149:1-150) 10 20 30 40 50 60 pF1KE1 MNLWLLACLVAGFLGAWAPAVHTQGVFEDCCLAYHYPIGWAVLRRAWTYRIQEVSGSCNL :::::::::::::::::::::::::::::::::::::::::::::::::::::::::::: XP_016 MNLWLLACLVAGFLGAWAPAVHTQGVFEDCCLAYHYPIGWAVLRRAWTYRIQEVSGSCNL 10 20 30 40 50 60 70 80 90 100 110 pF1KE1 PAAIFYLPKRHRKVCGNPKSREVQRAMKLLDARNKVFAKLHHNTQTFQ-GPHAVKKLSSG :::::::::::::::::::::::::::::::::::::::::::::::: ::::::::::: XP_016 PAAIFYLPKRHRKVCGNPKSREVQRAMKLLDARNKVFAKLHHNTQTFQAGPHAVKKLSSG 70 80 90 100 110 120 120 130 140 pF1KE1 NSKLSSSKFSNPISSSKRNVSLLISANSGL :::::::::::::::::::::::::::::: XP_016 NSKLSSSKFSNPISSSKRNVSLLISANSGL 130 140 150 >>XP_016882610 (OMIM: 602565) PREDICTED: C-C motif chemo (150 aa) initn: 771 init1: 771 opt: 1005 Z-score: 1273.4 bits: 241.6 E(85289): 3.5e-64 Smith-Waterman score: 1005; 99.3% identity (99.3% similar) in 150 aa overlap (1-149:1-150) 10 20 30 40 50 60 pF1KE1 MNLWLLACLVAGFLGAWAPAVHTQGVFEDCCLAYHYPIGWAVLRRAWTYRIQEVSGSCNL :::::::::::::::::::::::::::::::::::::::::::::::::::::::::::: XP_016 MNLWLLACLVAGFLGAWAPAVHTQGVFEDCCLAYHYPIGWAVLRRAWTYRIQEVSGSCNL 10 20 30 40 50 60 70 80 90 100 110 pF1KE1 PAAIFYLPKRHRKVCGNPKSREVQRAMKLLDARNKVFAKLHHNTQTFQ-GPHAVKKLSSG :::::::::::::::::::::::::::::::::::::::::::::::: ::::::::::: XP_016 PAAIFYLPKRHRKVCGNPKSREVQRAMKLLDARNKVFAKLHHNTQTFQAGPHAVKKLSSG 70 80 90 100 110 120 120 130 140 pF1KE1 NSKLSSSKFSNPISSSKRNVSLLISANSGL :::::::::::::::::::::::::::::: XP_016 NSKLSSSKFSNPISSSKRNVSLLISANSGL 130 140 150 >>XP_011526479 (OMIM: 602565) PREDICTED: C-C motif chemo (150 aa) initn: 771 init1: 771 opt: 1005 Z-score: 1273.4 bits: 241.6 E(85289): 3.5e-64 Smith-Waterman score: 1005; 99.3% identity (99.3% similar) in 150 aa overlap (1-149:1-150) 10 20 30 40 50 60 pF1KE1 MNLWLLACLVAGFLGAWAPAVHTQGVFEDCCLAYHYPIGWAVLRRAWTYRIQEVSGSCNL :::::::::::::::::::::::::::::::::::::::::::::::::::::::::::: XP_011 MNLWLLACLVAGFLGAWAPAVHTQGVFEDCCLAYHYPIGWAVLRRAWTYRIQEVSGSCNL 10 20 30 40 50 60 70 80 90 100 110 pF1KE1 PAAIFYLPKRHRKVCGNPKSREVQRAMKLLDARNKVFAKLHHNTQTFQ-GPHAVKKLSSG :::::::::::::::::::::::::::::::::::::::::::::::: ::::::::::: XP_011 PAAIFYLPKRHRKVCGNPKSREVQRAMKLLDARNKVFAKLHHNTQTFQAGPHAVKKLSSG 70 80 90 100 110 120 120 130 140 pF1KE1 NSKLSSSKFSNPISSSKRNVSLLISANSGL :::::::::::::::::::::::::::::: XP_011 NSKLSSSKFSNPISSSKRNVSLLISANSGL 130 140 150 >>XP_016882608 (OMIM: 602565) PREDICTED: C-C motif chemo (210 aa) initn: 771 init1: 771 opt: 1005 Z-score: 1271.2 bits: 241.7 E(85289): 4.5e-64 Smith-Waterman score: 1005; 99.3% identity (99.3% similar) in 150 aa overlap (1-149:61-210) 10 20 30 pF1KE1 MNLWLLACLVAGFLGAWAPAVHTQGVFEDC :::::::::::::::::::::::::::::: XP_016 SPAGISSLDPVDIGGPVIRPGAQGGGPACSMNLWLLACLVAGFLGAWAPAVHTQGVFEDC 40 50 60 70 80 90 40 50 60 70 80 90 pF1KE1 CLAYHYPIGWAVLRRAWTYRIQEVSGSCNLPAAIFYLPKRHRKVCGNPKSREVQRAMKLL :::::::::::::::::::::::::::::::::::::::::::::::::::::::::::: XP_016 CLAYHYPIGWAVLRRAWTYRIQEVSGSCNLPAAIFYLPKRHRKVCGNPKSREVQRAMKLL 100 110 120 130 140 150 100 110 120 130 140 pF1KE1 DARNKVFAKLHHNTQTFQ-GPHAVKKLSSGNSKLSSSKFSNPISSSKRNVSLLISANSGL :::::::::::::::::: ::::::::::::::::::::::::::::::::::::::::: XP_016 DARNKVFAKLHHNTQTFQAGPHAVKKLSSGNSKLSSSKFSNPISSSKRNVSLLISANSGL 160 170 180 190 200 210 >>XP_016867161 (OMIM: 604697) PREDICTED: C-C motif chemo (94 aa) initn: 122 init1: 86 opt: 160 Z-score: 214.5 bits: 45.0 E(85289): 3.3e-05 Smith-Waterman score: 160; 34.5% identity (63.2% similar) in 87 aa overlap (5-90:11-88) 10 20 30 40 50 pF1KE1 MNLWLLACLVAGFLGAWAPAVHTQGVFEDCCLAY-HYPIGWAVLRRAWTYRIQE ::: :.. ::. :.. . . . ::. : : :. :. :. . XP_016 MMGLSLASAVLLASLLSLHLGT---ATRGSDISKTCCFQYSHKPLPWT-----WVRSYEF 10 20 30 40 50 60 70 80 90 100 110 pF1KE1 VSGSCNLPAAIFYLPKRHRKVCGNPKSREVQRAMKLLDARNKVFAKLHHNTQTFQGPHAV .:.::. :.:: :: .::: .:... ::. ..:: XP_016 TSNSCSQRAVIF-TTKRGKKVCTHPRKKWVQKYISLLKTPKQL 60 70 80 90 120 130 140 pF1KE1 KKLSSGNSKLSSSKFSNPISSSKRNVSLLISANSGL >>NP_006063 (OMIM: 604697) C-C motif chemokine 26 precur (94 aa) initn: 122 init1: 86 opt: 160 Z-score: 214.5 bits: 45.0 E(85289): 3.3e-05 Smith-Waterman score: 160; 34.5% identity (63.2% similar) in 87 aa overlap (5-90:11-88) 10 20 30 40 50 pF1KE1 MNLWLLACLVAGFLGAWAPAVHTQGVFEDCCLAY-HYPIGWAVLRRAWTYRIQE ::: :.. ::. :.. . . . ::. : : :. :. :. . NP_006 MMGLSLASAVLLASLLSLHLGT---ATRGSDISKTCCFQYSHKPLPWT-----WVRSYEF 10 20 30 40 50 60 70 80 90 100 110 pF1KE1 VSGSCNLPAAIFYLPKRHRKVCGNPKSREVQRAMKLLDARNKVFAKLHHNTQTFQGPHAV .:.::. :.:: :: .::: .:... ::. ..:: NP_006 TSNSCSQRAVIF-TTKRGKKVCTHPRKKWVQKYISLLKTPKQL 60 70 80 90 120 130 140 pF1KE1 KKLSSGNSKLSSSKFSNPISSSKRNVSLLISANSGL >>XP_016867160 (OMIM: 604697) PREDICTED: C-C motif chemo (148 aa) initn: 122 init1: 86 opt: 160 Z-score: 211.6 bits: 45.2 E(85289): 4.8e-05 Smith-Waterman score: 160; 34.5% identity (63.2% similar) in 87 aa overlap (5-90:65-142) 10 20 30 pF1KE1 MNLWLLACLVAGFLGAWAPAVHTQGVFEDCCLAY ::: :.. ::. :.. . . . ::. : XP_016 KGDQAGGVWEKPEKGLICSIMMGLSLASAVLLASLLSLHLGT---ATRGSDISKTCCFQY 40 50 60 70 80 90 40 50 60 70 80 90 pF1KE1 -HYPIGWAVLRRAWTYRIQEVSGSCNLPAAIFYLPKRHRKVCGNPKSREVQRAMKLLDAR : :. :. :. . .:.::. :.:: :: .::: .:... ::. ..:: XP_016 SHKPLPWT-----WVRSYEFTSNSCSQRAVIF-TTKRGKKVCTHPRKKWVQKYISLLKTP 100 110 120 130 140 100 110 120 130 140 pF1KE1 NKVFAKLHHNTQTFQGPHAVKKLSSGNSKLSSSKFSNPISSSKRNVSLLISANSGL XP_016 KQL 149 residues in 1 query sequences 60827320 residues in 85289 library sequences Tcomplib [36.3.4 Apr, 2011] (8 proc) start: Mon Nov 7 15:31:34 2016 done: Mon Nov 7 15:31:35 2016 Total Scan time: 4.800 Total Display time: -0.010 Function used was FASTA [36.3.4 Apr, 2011]