FASTA searches a protein or DNA sequence data bank 36.3.4 Apr, 2011
Please cite:
W.R. Pearson & D.J. Lipman PNAS (1988) 85:2444-2448

Query: pF1KE1634, 149 aa
  1>>>pF1KE1634 149 - 149 aa - 149 aa
Library: human.CCDS.faa
  18511270 residues in 32554 sequences

Statistics:  Expectation_n fit: rho(ln(x))= 4.9730+/-0.000692; mu= 13.3799+/- 0.042
 mean_var=59.9697+/-12.036, 0's: 0 Z-trim(110.2): 31  B-trim: 641 in 2/48
 Lambda= 0.165618
 statistics sampled from 11393 (11424) to 11393 sequences
Algorithm: FASTA (3.7 Nov 2010) [optimized]
Parameters: BL50 matrix (15:-5), open/ext: -10/-2
 ktup: 2, E-join: 1 (0.733), E-opt: 0.2 (0.351), width:  16
 Scan time:  1.570

The best scores are:                                      opt bits E(32554)
CCDS56080.1 CCL25 gene_id:6370|Hs108|chr19         ( 149) 1017 250.6 2.6e-67
CCDS12194.1 CCL25 gene_id:6370|Hs108|chr19         ( 150) 1005 247.8 1.9e-66


>>CCDS56080.1 CCL25 gene_id:6370|Hs108|chr19              (149 aa)
 initn: 1017 init1: 1017 opt: 1017  Z-score: 1322.0  bits: 250.6 E(32554): 2.6e-67
Smith-Waterman score: 1017; 100.0% identity (100.0% similar) in 149 aa overlap (1-149:1-149)

               10        20        30        40        50        60
pF1KE1 MNLWLLACLVAGFLGAWAPAVHTQGVFEDCCLAYHYPIGWAVLRRAWTYRIQEVSGSCNL
       ::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
CCDS56 MNLWLLACLVAGFLGAWAPAVHTQGVFEDCCLAYHYPIGWAVLRRAWTYRIQEVSGSCNL
               10        20        30        40        50        60

               70        80        90       100       110       120
pF1KE1 PAAIFYLPKRHRKVCGNPKSREVQRAMKLLDARNKVFAKLHHNTQTFQGPHAVKKLSSGN
       ::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
CCDS56 PAAIFYLPKRHRKVCGNPKSREVQRAMKLLDARNKVFAKLHHNTQTFQGPHAVKKLSSGN
               70        80        90       100       110       120

              130       140         
pF1KE1 SKLSSSKFSNPISSSKRNVSLLISANSGL
       :::::::::::::::::::::::::::::
CCDS56 SKLSSSKFSNPISSSKRNVSLLISANSGL
              130       140         

>>CCDS12194.1 CCL25 gene_id:6370|Hs108|chr19              (150 aa)
 initn: 771 init1: 771 opt: 1005  Z-score: 1306.5  bits: 247.8 E(32554): 1.9e-66
Smith-Waterman score: 1005; 99.3% identity (99.3% similar) in 150 aa overlap (1-149:1-150)

               10        20        30        40        50        60
pF1KE1 MNLWLLACLVAGFLGAWAPAVHTQGVFEDCCLAYHYPIGWAVLRRAWTYRIQEVSGSCNL
       ::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
CCDS12 MNLWLLACLVAGFLGAWAPAVHTQGVFEDCCLAYHYPIGWAVLRRAWTYRIQEVSGSCNL
               10        20        30        40        50        60

               70        80        90       100        110         
pF1KE1 PAAIFYLPKRHRKVCGNPKSREVQRAMKLLDARNKVFAKLHHNTQTFQ-GPHAVKKLSSG
       :::::::::::::::::::::::::::::::::::::::::::::::: :::::::::::
CCDS12 PAAIFYLPKRHRKVCGNPKSREVQRAMKLLDARNKVFAKLHHNTQTFQAGPHAVKKLSSG
               70        80        90       100       110       120

     120       130       140         
pF1KE1 NSKLSSSKFSNPISSSKRNVSLLISANSGL
       ::::::::::::::::::::::::::::::
CCDS12 NSKLSSSKFSNPISSSKRNVSLLISANSGL
              130       140       150




149 residues in 1 query   sequences
18511270 residues in 32554 library sequences
 Tcomplib [36.3.4 Apr, 2011] (8 proc)
 start: Mon Nov  7 15:31:33 2016 done: Mon Nov  7 15:31:34 2016
 Total Scan time:  1.570 Total Display time: -0.010

Function used was FASTA [36.3.4 Apr, 2011]