(Circular) (Six-base) MAPSORT of: pFN21AE3078.seq Check: 7643 from: 1 to: 5419 pFN21AE3078 5419 bp With 182 enzymes: SgfI * July 6, 2012 17:34 .. AatII G_ACGT'C Cuts at: 278 331 414 600 1536 3229 278 Size: 53 83 186 936 1693 2468 Fragments arranged by size: 2468 1693 936 186 83 53 AccI GT'mk_AC Cuts at: 1937 2463 2762 1937 Size: 526 299 4594 Fragments arranged by size: 4594 526 299 Acc65I G'GTAC_C Cuts at: 2740 2740 Size: 5419 AclI AA'CG_TT Cuts at: 1563 3546 3919 1563 Size: 1983 373 3063 Fragments arranged by size: 3063 1983 373 AcuI CTGAAGnnnnnnnnnnnnnn_nn' Cuts at: 1632 2059 2566 2672 3482 4866 5134 1632 Size: 427 507 106 810 1384 268 1917 Fragments arranged by size: 1917 1384 810 507 427 268 106 AflII C'TTAA_G Cuts at: 820 1017 820 Size: 197 5222 AflIII A'CryG_T Cuts at: 1203 4318 5295 1203 Size: 3115 977 1327 Fragments arranged by size: 3115 1327 977 AgeI A'CCGG_T Cuts at: 4250 4250 Size: 5419 AhdI GACnn_n'nnGTC Cuts at: 4148 4148 Size: 5419 AleI CACnn'nnGTG Cuts at: 1166 1166 Size: 5419 AlfI GCAnnnnnnTGCnnnnnnnnnn_nn' Cuts at: 1184 1184 Size: 5419 AlwNI CAG_nnn'CTG Cuts at: 2650 2683 3162 4734 2650 Size: 33 479 1572 3335 Fragments arranged by size: 3335 1572 479 33 ApaI G_GGCC'C Cuts at: 2523 2523 Size: 5419 ApaLI G'TGCA_C Cuts at: 3476 4632 3476 Size: 1156 4263 ApoI r'AATT_y Cuts at: 1493 2224 2296 2602 2728 2954 3106 5215 1493 Size: 731 72 306 126 226 152 2109 1697 Fragments arranged by size: 2109 1697 731 306 226 152 126 72 AseI AT'TA_AT Cuts at: 160 1032 3973 160 Size: 872 2941 1606 Fragments arranged by size: 2941 1606 872 AsiSI GCG_AT'CGC Cuts at: 2001 2001 Size: 5419 AvaI C'yCGr_G Cuts at: 1870 1943 2744 1870 Size: 73 801 4545 Fragments arranged by size: 4545 801 73 BamHI G'GATC_C Cuts at: 2749 3116 2749 Size: 367 5052 BanI G'GyrC_C Cuts at: 618 943 1160 1787 2740 4195 618 Size: 325 217 627 953 1455 1842 Fragments arranged by size: 1842 1455 953 627 325 217 BanII G_rGCy'C Cuts at: 1391 2417 2523 2738 1391 Size: 1026 106 215 4072 Fragments arranged by size: 4072 1026 215 106 BbsI GAAGACnn'nnnn_ Cuts at: 928 1899 2460 928 Size: 971 561 3887 Fragments arranged by size: 3887 971 561 BbvCI CC'TCA_GC Cuts at: 2150 2150 Size: 5419 BcgI CGAnnnnnnTGCnnnnnnnnnn_nn' Cuts at: 1903 1937 3610 3644 1903 Size: 34 1673 34 3678 Fragments arranged by size: 3678 1673 34 34 BciVI GTATCCnnnnn_n' Cuts at: 3311 4521 3311 Size: 1210 4209 BclI T'GATC_A Cuts at: 1548 1548 Size: 5419 BglI GCCn_nnn'nGGC Cuts at: 136 243 365 436 1067 1672 4030 136 Size: 107 122 71 631 605 2358 1525 Fragments arranged by size: 2358 1525 631 605 122 107 71 BglII A'GATC_T Cuts at: 5414 5414 Size: 5419 BlpI GC'TnA_GC Cuts at: 2836 2836 Size: 5419 Bme1580I G_kGCm'C Cuts at: 1790 2523 3480 4636 1790 Size: 733 957 1156 2573 Fragments arranged by size: 2573 1156 957 733 BmgBI CAC'GTC Cuts at: 1318 1318 Size: 5419 BmrI ACTGGGnnnn_n' Cuts at: 442 858 911 994 1393 1417 2310 3150 4108 Size: 416 53 83 399 24 893 840 958 Cuts at: 4108 442 Size: 1753 Fragments arranged by size: 1753 958 893 840 416 399 83 53 24 BmtI G_CTAG'C Cuts at: 1056 1056 Size: 5419 BpmI CTGGAGnnnnnnnnnnnnnn_nn' Cuts at: 1239 2048 4079 1239 Size: 809 2031 2579 Fragments arranged by size: 2579 2031 809 Bpu10I CC'TnA_GC Cuts at: 2150 2150 Size: 5419 BpuEI CTTGAGnnnnnnnnnnnnnn_nn' Cuts at: 3544 4409 4707 3544 Size: 865 298 4256 Fragments arranged by size: 4256 865 298 BsaI GGTCTCn'nnnn_ Cuts at: 882 1499 4082 882 Size: 617 2583 2219 Fragments arranged by size: 2583 2219 617 BsaAI yAC'GTr Cuts at: 493 1204 3210 493 Size: 711 2006 2702 Fragments arranged by size: 2702 2006 711 BsaBI GATnn'nnATC Cuts at: 5413 5413 Size: 5419 BsaHI Gr'CG_yC Cuts at: 275 328 411 597 1533 2037 3226 3608 4243 Size: 53 83 186 936 504 1189 382 635 Cuts at: 4243 275 Size: 1451 Fragments arranged by size: 1451 1189 936 635 504 382 186 83 53 BsaWI w'CCGG_w Cuts at: 3852 4250 4524 4671 5082 3852 Size: 398 274 147 411 4189 Fragments arranged by size: 4189 411 398 274 147 BsaXI ACnnnnnCTCCnnnnnnn_nnn' Cuts at: 1178 1208 1373 1403 1178 Size: 30 165 30 5194 Fragments arranged by size: 5194 165 30 30 BseRI GAGGAGnnnnnnnn_nn' Cuts at: 1186 2045 2174 1186 Size: 859 129 4431 Fragments arranged by size: 4431 859 129 BseYI C'CCAG_C Cuts at: 4622 5118 4622 Size: 496 4923 BsgI GTGCAGnnnnnnnnnnnnnn_nn' Cuts at: 1163 1736 1163 Size: 573 4846 BsiEI CG_ry'CG Cuts at: 1540 1815 2001 2869 3630 4658 1540 Size: 275 186 868 761 1028 2301 Fragments arranged by size: 2301 1028 868 761 275 186 BsiHKAI G_wGCw'C Cuts at: 3480 3565 4636 3480 Size: 85 1071 4263 Fragments arranged by size: 4263 1071 85 BsmI GAATG_Cn' Cuts at: 2930 3023 2930 Size: 93 5326 Bsp1286I G_dGCh'C Cuts at: 1391 1790 2417 2523 2738 3480 3565 4636 1391 Size: 399 627 106 215 742 85 1071 2174 Fragments arranged by size: 2174 1071 742 627 399 215 106 85 BspEI T'CCGG_A Cuts at: 5082 5082 Size: 5419 BspHI T'CATG_A Cuts at: 3308 5038 3308 Size: 1730 3689 BspMI ACCTGCnnnn'nnnn_ Cuts at: 844 2511 2774 844 Size: 1667 263 3489 Fragments arranged by size: 3489 1667 263 BsrBI CCG'CTC Cuts at: 1394 1823 2103 3306 1394 Size: 429 280 1203 3507 Fragments arranged by size: 3507 1203 429 280 BsrDI GCAATG_nn' Cuts at: 65 1248 2329 3914 4088 65 Size: 1183 1081 1585 174 1396 Fragments arranged by size: 1585 1396 1183 1081 174 BsrFI r'CCGG_y Cuts at: 1700 1810 4063 4250 1700 Size: 110 2253 187 2869 Fragments arranged by size: 2869 2253 187 110 BsrGI T'GTAC_A Cuts at: 96 96 Size: 5419 BssHII G'CGCG_C Cuts at: 1925 1925 Size: 5419 BssSI C'ACGA_G Cuts at: 2402 3479 4491 2402 Size: 1077 1012 3330 Fragments arranged by size: 3330 1077 1012 BstAPI GCAn_nnn'nTGC Cuts at: 794 794 Size: 5419 BstBI TT'CG_AA Cuts at: 4223 4223 Size: 5419 BstEII G'GTnAC_C Cuts at: 1184 1184 Size: 5419 BstYI r'GATC_y Cuts at: 1972 2749 3116 3501 3518 4970 5056 5068 5414 Size: 777 367 385 17 1452 86 12 346 Cuts at: 5414 1972 Size: 1977 Fragments arranged by size: 1977 1452 777 385 367 346 86 17 12 BtgI C'CryG_G Cuts at: 513 1065 513 Size: 552 4867 BtgZI GCGATGnnnnnnnnnn'nnnn_ Cuts at: 487 1170 1226 487 Size: 683 56 4680 Fragments arranged by size: 4680 683 56 BtsI GCAGTG_nn' Cuts at: 2935 3729 3749 2935 Size: 794 20 4605 Fragments arranged by size: 4605 794 20 ClaI AT'CG_AT Cuts at: 1554 1554 Size: 5419 CspCI CAAnnnnnGTGGnnnnnnnnnn_nn' Cuts at: 529 564 529 Size: 35 5384 DraI TTT'AAA Cuts at: 2723 2723 Size: 5419 DrdI GACnn_nn'nnGTC Cuts at: 809 1316 4426 809 Size: 507 3110 1802 Fragments arranged by size: 3110 1802 507 EaeI y'GGCC_r Cuts at: 8 62 1487 1537 1812 1830 2107 2866 3755 Size: 54 1425 50 275 18 277 759 889 Cuts at: 3755 5384 8 Size: 1629 43 Fragments arranged by size: 1629 1425 889 759 277 275 54 50 43 18 EagI C'GGCC_G Cuts at: 1537 1812 2866 1537 Size: 275 1054 4090 Fragments arranged by size: 4090 1054 275 EarI CTCTTCn'nnn_ Cuts at: 1353 2648 3349 1353 Size: 1295 701 3423 Fragments arranged by size: 3423 1295 701 EciI GGCGGAnnnnnnnnn_nn' Cuts at: 387 1451 1589 4006 4380 4526 387 Size: 1064 138 2417 374 146 1280 Fragments arranged by size: 2417 1280 1064 374 146 138 Eco57MI CTGrAGnnnnnnnnnnnnnn_nn' Cuts at: 1239 1632 2048 2059 2566 2672 3482 4079 4866 Size: 393 416 11 507 106 810 597 787 Cuts at: 4866 5134 1239 Size: 268 1524 Fragments arranged by size: 1524 810 787 597 507 416 393 268 106 11 EcoNI CCTnn'n_nnAGG Cuts at: 2030 2074 2699 2030 Size: 44 625 4750 Fragments arranged by size: 4750 625 44 EcoO109I rG'GnC_Cy Cuts at: 2064 2383 2519 2064 Size: 319 136 4964 Fragments arranged by size: 4964 319 136 EcoRI G'AATT_C Cuts at: 2224 2728 3106 2224 Size: 504 378 4537 Fragments arranged by size: 4537 504 378 FalI AAGnnnnnCTTnnnnnnnn_nnnnn' Cuts at: 2236 2236 Size: 5419 FspI TGC'GCA Cuts at: 2612 3925 2612 Size: 1313 4106 HaeII r_GCGC'y Cuts at: 1678 2087 2662 4566 1678 Size: 409 575 1904 2531 Fragments arranged by size: 2531 1904 575 409 Hin4I GAynnnnnvTCnnnnnnnn_nnnnn' Cuts at: 1373 1405 1540 1572 4060 4092 4134 4166 1373 Size: 32 135 32 2488 32 42 32 2626 Fragments arranged by size: 2626 2488 135 42 32 32 32 32 HincII GTy'rAC Cuts at: 669 1657 1938 2763 3009 669 Size: 988 281 825 246 3079 Fragments arranged by size: 3079 988 825 281 246 HindIII A'AGCT_T Cuts at: 748 748 Size: 5419 HpaI GTT'AAC Cuts at: 3009 3009 Size: 5419 KpnI G_GTAC'C Cuts at: 2744 2744 Size: 5419 MfeI C'AATT_G Cuts at: 3018 3018 Size: 5419 MluI A'CGCG_T Cuts at: 5295 5295 Size: 5419 MmeI TCCrACnnnnnnnnnnnnnnnnnn_nn' Cuts at: 1305 4533 4717 1305 Size: 3228 184 2007 Fragments arranged by size: 3228 2007 184 MscI TGG'CCA Cuts at: 10 64 1489 1832 10 Size: 54 1425 343 3597 Fragments arranged by size: 3597 1425 343 54 MslI CAynn'nnrTG Cuts at: 518 1166 3377 3736 3895 518 Size: 648 2211 359 159 2042 Fragments arranged by size: 2211 2042 648 359 159 MspA1I CmG'CkG Cuts at: 1606 2013 2641 2835 3512 4660 4905 1606 Size: 407 628 194 677 1148 245 2120 Fragments arranged by size: 2120 1148 677 628 407 245 194 NcoI C'CATG_G Cuts at: 513 1065 513 Size: 552 4867 NdeI CA'TA_TG Cuts at: 387 387 Size: 5419 NheI G'CTAG_C Cuts at: 1052 1052 Size: 5419 NotI GC'GGCC_GC Cuts at: 2866 2866 Size: 5419 NspI r_CATG'y Cuts at: 1132 1229 2777 4322 1132 Size: 97 1548 1545 2229 Fragments arranged by size: 2229 1548 1545 97 PasI CC'CwG_GG Cuts at: 1348 2089 1348 Size: 741 4678 PciI A'CATG_T Cuts at: 4318 4318 Size: 5419 PflMI CCAn_nnn'nTGG Cuts at: 1108 2300 1108 Size: 1192 4227 PmeI GTTT'AAAC Cuts at: 2723 2723 Size: 5419 PpiI GAACnnnnnCTCnnnnnnnn_nnnnn' Cuts at: 2481 2513 3488 3520 5001 5033 2481 Size: 32 975 32 1481 32 2867 Fragments arranged by size: 2867 1481 975 32 32 32 PpuMI rG'GwC_Cy Cuts at: 2064 2064 Size: 5419 PshAI GACnn'nnGTC Cuts at: 1613 1613 Size: 5419 PsiI TTA'TAA Cuts at: 2436 2989 2436 Size: 553 4866 PspOMI G'GGCC_C Cuts at: 2519 2519 Size: 5419 PstI C_TGCA'G Cuts at: 830 2646 2771 830 Size: 1816 125 3478 Fragments arranged by size: 3478 1816 125 PvuI CG_AT'CG Cuts at: 2001 2001 Size: 5419 PvuII CAG'CTG Cuts at: 2641 2641 Size: 5419 SalI G'TCGA_C Cuts at: 1936 2761 1936 Size: 825 4594 SbfI CC_TGCA'GG Cuts at: 2771 2771 Size: 5419 ScaI AGT'ACT Cuts at: 3667 5379 3667 Size: 1712 3707 SfcI C'TryA_G Cuts at: 826 1045 2017 2597 2642 2671 2767 3902 4583 Size: 219 972 580 45 29 96 1135 681 Cuts at: 4583 4774 826 Size: 191 1471 Fragments arranged by size: 1471 1135 972 681 580 219 191 96 45 29 SgfI GCG_AT'CGC Cuts at: 2001 2001 Size: 5419 SgrAI Cr'CCGG_yG Cuts at: 1700 1700 Size: 5419 SmaI CCC'GGG Cuts at: 1872 2746 1872 Size: 874 4545 SmlI C'TyrA_G Cuts at: 820 1017 1943 3523 4424 4686 820 Size: 197 926 1580 901 262 1553 Fragments arranged by size: 1580 1553 926 901 262 197 SnaBI TAC'GTA Cuts at: 493 3210 493 Size: 2717 2702 SpeI A'CTAG_T Cuts at: 152 152 Size: 5419 SphI G_CATG'C Cuts at: 1132 2777 1132 Size: 1645 3774 SspI AAT'ATT Cuts at: 5 52 3343 5 Size: 47 3291 2081 Fragments arranged by size: 3291 2081 47 StuI AGG'CCT Cuts at: 1517 1517 Size: 5419 StyI C'CwwG_G Cuts at: 513 1065 2858 513 Size: 552 1793 3074 Fragments arranged by size: 3074 1793 552 TaqII GACCGAnnnnnnnnn_nn' Cuts at: 325 1580 3446 3463 3616 3801 4246 325 Size: 1255 1866 17 153 185 445 1498 Fragments arranged by size: 1866 1498 1255 445 185 153 17 TatI w'GTAC_w Cuts at: 96 370 450 483 534 1977 2257 3665 5377 Size: 274 80 33 51 1443 280 1408 1712 Cuts at: 5377 96 Size: 138 Fragments arranged by size: 1712 1443 1408 280 274 138 80 51 33 TstI CACnnnnnnTCCnnnnnnn_nnnnn' Cuts at: 5379 5411 5379 Size: 32 5387 Tth111I GACn'n_nGTC Cuts at: 1316 2459 1316 Size: 1143 4276 XbaI T'CTAG_A Cuts at: 2755 2755 Size: 5419 XhoI C'TCGA_G Cuts at: 1943 1943 Size: 5419 XmaI C'CCGG_G Cuts at: 1870 2744 1870 Size: 874 4545 XmnI GAAnn'nnTTC Cuts at: 3548 3548 Size: 5419 ZraI GAC'GTC Cuts at: 276 329 412 598 1534 3227 276 Size: 53 83 186 936 1693 2468 Fragments arranged by size: 2468 1693 936 186 83 53 Enzymes that do cut: AatII AccI Acc65I AclI AcuI AflII AflIII AgeI AhdI AleI AlfI AlwNI ApaI ApaLI ApoI AseI AsiSI AvaI BamHI BanI BanII BbsI BbvCI BcgI BciVI BclI BglI BglII BlpI Bme1580I BmgBI BmrI BmtI BpmI Bpu10I BpuEI BsaI BsaAI BsaBI BsaHI BsaWI BsaXI BseRI BseYI BsgI BsiEI BsiHKAI BsmI Bsp1286I BspEI BspHI BspMI BsrBI BsrDI BsrFI BsrGI BssHII BssSI BstAPI BstBI BstEII BstYI BtgI BtgZI BtsI ClaI CspCI DraI DrdI EaeI EagI EarI EciI Eco57MI EcoNI EcoO109I EcoRI FalI FspI HaeII Hin4I HincII HindIII HpaI KpnI MfeI MluI MmeI MscI MslI MspA1I NcoI NdeI NheI NotI NspI PasI PciI PflMI PmeI PpiI PpuMI PshAI PsiI PspOMI PstI PvuI PvuII SalI SbfI ScaI SfcI SgfI SgrAI SmaI SmlI SnaBI SpeI SphI SspI StuI StyI TaqII TatI TstI Tth111I XbaI XhoI XmaI XmnI ZraI Enzymes that do not cut: AarI AfeI AloI AscI AvrII BaeI BbeI BfrBI BplI BsiWI BsmBI BstXI BstZ17I Bsu36I DraIII EcoICRI EcoRV FseI FspAI KasI NaeI NarI NgoMIV NruI NsiI PacI PfoI PmlI PspXI PsrI RsrII SacI SacII SanDI SapI SexAI SfiI SfoI SrfI SwaI XcmI