FASTA searches a protein or DNA sequence data bank 36.3.4 Apr, 2011 Please cite: W.R. Pearson & D.J. Lipman PNAS (1988) 85:2444-2448 Query: pF1KE3032, 161 aa 1>>>pF1KE3032 161 - 161 aa - 161 aa Library: /omim/omim.rfq.tfa 60827320 residues in 85289 sequences Statistics: Expectation_n fit: rho(ln(x))= 4.2899+/-0.00032; mu= 17.9298+/- 0.020 mean_var=59.2848+/-11.714, 0's: 0 Z-trim(115.8): 76 B-trim: 32 in 1/54 Lambda= 0.166572 statistics sampled from 26452 (26528) to 26452 sequences Algorithm: FASTA (3.7 Nov 2010) [optimized] Parameters: BL50 matrix (15:-5), open/ext: -10/-2 ktup: 2, E-join: 1 (0.705), E-opt: 0.2 (0.311), width: 16 Scan time: 5.370 The best scores are: opt bits E(85289) NP_001138633 (OMIM: 615832) ubiquitin-conjugating ( 161) 1079 266.9 9.8e-72 NP_001271311 (OMIM: 612501) ubiquitin-conjugating ( 340) 566 144.0 2.2e-34 NP_001138807 (OMIM: 612501) ubiquitin-conjugating ( 359) 566 144.0 2.2e-34 NP_775740 (OMIM: 612501) ubiquitin-conjugating enz ( 375) 566 144.0 2.3e-34 XP_016878217 (OMIM: 612501) PREDICTED: ubiquitin-c ( 261) 398 103.5 2.5e-22 XP_005254845 (OMIM: 612501) PREDICTED: ubiquitin-c ( 296) 398 103.5 2.8e-22 XP_016878216 (OMIM: 612501) PREDICTED: ubiquitin-c ( 279) 271 73.0 4.1e-13 XP_016878215 (OMIM: 612501) PREDICTED: ubiquitin-c ( 298) 271 73.0 4.3e-13 XP_005254844 (OMIM: 612501) PREDICTED: ubiquitin-c ( 314) 271 73.0 4.5e-13 NP_871618 (OMIM: 602963) ubiquitin-conjugating enz ( 147) 144 42.2 0.0004 NP_003331 (OMIM: 602963) ubiquitin-conjugating enz ( 147) 144 42.2 0.0004 NP_871617 (OMIM: 602963) ubiquitin-conjugating enz ( 147) 144 42.2 0.0004 NP_871620 (OMIM: 602963) ubiquitin-conjugating enz ( 147) 144 42.2 0.0004 NP_871616 (OMIM: 602963) ubiquitin-conjugating enz ( 147) 144 42.2 0.0004 NP_871615 (OMIM: 602963) ubiquitin-conjugating enz ( 147) 144 42.2 0.0004 NP_003330 (OMIM: 602962) ubiquitin-conjugating enz ( 147) 144 42.2 0.0004 NP_871619 (OMIM: 602963) ubiquitin-conjugating enz ( 147) 144 42.2 0.0004 NP_871621 (OMIM: 602963) ubiquitin-conjugating enz ( 148) 144 42.2 0.0004 NP_871622 (OMIM: 602963) ubiquitin-conjugating enz ( 149) 144 42.2 0.0004 NP_003329 (OMIM: 602961) ubiquitin-conjugating enz ( 147) 141 41.5 0.00066 XP_016865309 (OMIM: 602962) PREDICTED: ubiquitin-c ( 173) 138 40.8 0.0012 NP_003338 (OMIM: 603721) ubiquitin-conjugating enz ( 154) 127 38.1 0.007 NP_001243284 (OMIM: 603721) ubiquitin-conjugating ( 212) 127 38.3 0.0088 XP_011516251 (OMIM: 612506) PREDICTED: ubiquitin-c ( 193) 126 38.0 0.0097 >>NP_001138633 (OMIM: 615832) ubiquitin-conjugating enzy (161 aa) initn: 1079 init1: 1079 opt: 1079 Z-score: 1408.9 bits: 266.9 E(85289): 9.8e-72 Smith-Waterman score: 1079; 100.0% identity (100.0% similar) in 161 aa overlap (1-161:1-161) 10 20 30 40 50 60 pF1KE3 MKELQDIARLSDRFISVELVDESLFDWNVKLHQVDKDSVLWQDMKETNTEFILLNLTFPD :::::::::::::::::::::::::::::::::::::::::::::::::::::::::::: NP_001 MKELQDIARLSDRFISVELVDESLFDWNVKLHQVDKDSVLWQDMKETNTEFILLNLTFPD 10 20 30 40 50 60 70 80 90 100 110 120 pF1KE3 NFPFSPPFMRVLSPRLENGYVLDGGAICMELLTPRGWSSAYTVEAVMRQFAASLVKGQGR :::::::::::::::::::::::::::::::::::::::::::::::::::::::::::: NP_001 NFPFSPPFMRVLSPRLENGYVLDGGAICMELLTPRGWSSAYTVEAVMRQFAASLVKGQGR 70 80 90 100 110 120 130 140 150 160 pF1KE3 ICRKAGKSKKSFSRKEAEATFKSLVKTHEKYGWVTPPVSDG ::::::::::::::::::::::::::::::::::::::::: NP_001 ICRKAGKSKKSFSRKEAEATFKSLVKTHEKYGWVTPPVSDG 130 140 150 160 >>NP_001271311 (OMIM: 612501) ubiquitin-conjugating enzy (340 aa) initn: 590 init1: 326 opt: 566 Z-score: 738.4 bits: 144.0 E(85289): 2.2e-34 Smith-Waterman score: 566; 50.6% identity (78.6% similar) in 168 aa overlap (1-161:175-340) 10 20 pF1KE3 MKELQDIARLSDR---FISVELVDESLFDW ::::.:: : .. . ::::...::.:: NP_001 LAILEKIRKTQRQDHLNGAVSGSVQASDRLMKELRDIYRSQSYKTGIYSVELINDSLYDW 150 160 170 180 190 200 30 40 50 60 70 80 pF1KE3 NVKLHQVDKDSVLWQDMK----ETNTEFILLNLTFPDNFPFSPPFMRVLSPRLENGYVLD .:::..:: :: : .:.. . . :.::::..: :::::.:::.::. : : .:::: NP_001 HVKLQKVDPDSPLHSDLQILKEKEGIEYILLNFSFKDNFPFDPPFVRVVLPVLSGGYVLG 210 220 230 240 250 260 90 100 110 120 130 140 pF1KE3 GGAICMELLTPRGWSSAYTVEAVMRQFAASLVKGQGRICRKAGKSKKSFSRKEAEATFKS :::.:::::: .::::::..:.:. :. :.::::..:. . : .:.... .:. ...: NP_001 GGALCMELLTKQGWSSAYSIESVIMQINATLVKGKARV--QFGANKNQYNLARAQQSYNS 270 280 290 300 310 320 150 160 pF1KE3 LVKTHEKYGWVTPPVSDG .:. ::: :: ::: :: NP_001 IVQIHEKNGWYTPPKEDG 330 340 >>NP_001138807 (OMIM: 612501) ubiquitin-conjugating enzy (359 aa) initn: 590 init1: 326 opt: 566 Z-score: 738.1 bits: 144.0 E(85289): 2.2e-34 Smith-Waterman score: 566; 50.6% identity (78.6% similar) in 168 aa overlap (1-161:194-359) 10 20 pF1KE3 MKELQDIARLSDR---FISVELVDESLFDW ::::.:: : .. . ::::...::.:: NP_001 LAILEKIRKTQRQDHLNGAVSGSVQASDRLMKELRDIYRSQSYKTGIYSVELINDSLYDW 170 180 190 200 210 220 30 40 50 60 70 80 pF1KE3 NVKLHQVDKDSVLWQDMK----ETNTEFILLNLTFPDNFPFSPPFMRVLSPRLENGYVLD .:::..:: :: : .:.. . . :.::::..: :::::.:::.::. : : .:::: NP_001 HVKLQKVDPDSPLHSDLQILKEKEGIEYILLNFSFKDNFPFDPPFVRVVLPVLSGGYVLG 230 240 250 260 270 280 90 100 110 120 130 140 pF1KE3 GGAICMELLTPRGWSSAYTVEAVMRQFAASLVKGQGRICRKAGKSKKSFSRKEAEATFKS :::.:::::: .::::::..:.:. :. :.::::..:. . : .:.... .:. ...: NP_001 GGALCMELLTKQGWSSAYSIESVIMQINATLVKGKARV--QFGANKNQYNLARAQQSYNS 290 300 310 320 330 340 150 160 pF1KE3 LVKTHEKYGWVTPPVSDG .:. ::: :: ::: :: NP_001 IVQIHEKNGWYTPPKEDG 350 >>NP_775740 (OMIM: 612501) ubiquitin-conjugating enzyme (375 aa) initn: 590 init1: 326 opt: 566 Z-score: 737.9 bits: 144.0 E(85289): 2.3e-34 Smith-Waterman score: 566; 50.6% identity (78.6% similar) in 168 aa overlap (1-161:210-375) 10 20 pF1KE3 MKELQDIARLSDR---FISVELVDESLFDW ::::.:: : .. . ::::...::.:: NP_775 LAILEKIRKTQRQDHLNGAVSGSVQASDRLMKELRDIYRSQSYKTGIYSVELINDSLYDW 180 190 200 210 220 230 30 40 50 60 70 80 pF1KE3 NVKLHQVDKDSVLWQDMK----ETNTEFILLNLTFPDNFPFSPPFMRVLSPRLENGYVLD .:::..:: :: : .:.. . . :.::::..: :::::.:::.::. : : .:::: NP_775 HVKLQKVDPDSPLHSDLQILKEKEGIEYILLNFSFKDNFPFDPPFVRVVLPVLSGGYVLG 240 250 260 270 280 290 90 100 110 120 130 140 pF1KE3 GGAICMELLTPRGWSSAYTVEAVMRQFAASLVKGQGRICRKAGKSKKSFSRKEAEATFKS :::.:::::: .::::::..:.:. :. :.::::..:. . : .:.... .:. ...: NP_775 GGALCMELLTKQGWSSAYSIESVIMQINATLVKGKARV--QFGANKNQYNLARAQQSYNS 300 310 320 330 340 350 150 160 pF1KE3 LVKTHEKYGWVTPPVSDG .:. ::: :: ::: :: NP_775 IVQIHEKNGWYTPPKEDG 360 370 >>XP_016878217 (OMIM: 612501) PREDICTED: ubiquitin-conju (261 aa) initn: 428 init1: 294 opt: 398 Z-score: 521.7 bits: 103.5 E(85289): 2.5e-22 Smith-Waterman score: 398; 53.9% identity (81.4% similar) in 102 aa overlap (60-161:162-261) 30 40 50 60 70 80 pF1KE3 KLHQVDKDSVLWQDMKETNTEFILLNLTFPDNFPFSPPFMRVLSPRLENGYVLDGGAICM :::::.:::.::. : : .:::: :::.:: XP_016 GKKSEDEGIEKENLAILEKIRKTQRQDHLNDNFPFDPPFVRVVLPVLSGGYVLGGGALCM 140 150 160 170 180 190 90 100 110 120 130 140 pF1KE3 ELLTPRGWSSAYTVEAVMRQFAASLVKGQGRICRKAGKSKKSFSRKEAEATFKSLVKTHE :::: .::::::..:.:. :. :.::::..:. . : .:.... .:. ...:.:. :: XP_016 ELLTKQGWSSAYSIESVIMQINATLVKGKARV--QFGANKNQYNLARAQQSYNSIVQIHE 200 210 220 230 240 150 160 pF1KE3 KYGWVTPPVSDG : :: ::: :: XP_016 KNGWYTPPKEDG 250 260 >>XP_005254845 (OMIM: 612501) PREDICTED: ubiquitin-conju (296 aa) initn: 428 init1: 294 opt: 398 Z-score: 521.0 bits: 103.5 E(85289): 2.8e-22 Smith-Waterman score: 398; 53.9% identity (81.4% similar) in 102 aa overlap (60-161:197-296) 30 40 50 60 70 80 pF1KE3 KLHQVDKDSVLWQDMKETNTEFILLNLTFPDNFPFSPPFMRVLSPRLENGYVLDGGAICM :::::.:::.::. : : .:::: :::.:: XP_005 GKKSEDEGIEKENLAILEKIRKTQRQDHLNDNFPFDPPFVRVVLPVLSGGYVLGGGALCM 170 180 190 200 210 220 90 100 110 120 130 140 pF1KE3 ELLTPRGWSSAYTVEAVMRQFAASLVKGQGRICRKAGKSKKSFSRKEAEATFKSLVKTHE :::: .::::::..:.:. :. :.::::..:. . : .:.... .:. ...:.:. :: XP_005 ELLTKQGWSSAYSIESVIMQINATLVKGKARV--QFGANKNQYNLARAQQSYNSIVQIHE 230 240 250 260 270 280 150 160 pF1KE3 KYGWVTPPVSDG : :: ::: :: XP_005 KNGWYTPPKEDG 290 >>XP_016878216 (OMIM: 612501) PREDICTED: ubiquitin-conju (279 aa) initn: 283 init1: 145 opt: 271 Z-score: 356.4 bits: 73.0 E(85289): 4.1e-13 Smith-Waterman score: 271; 50.0% identity (76.1% similar) in 88 aa overlap (1-81:175-262) 10 20 pF1KE3 MKELQDIARLSDR---FISVELVDESLFDW ::::.:: : .. . ::::...::.:: XP_016 LAILEKIRKTQRQDHLNGAVSGSVQASDRLMKELRDIYRSQSYKTGIYSVELINDSLYDW 150 160 170 180 190 200 30 40 50 60 70 80 pF1KE3 NVKLHQVDKDSVLWQDMK----ETNTEFILLNLTFPDNFPFSPPFMRVLSPRLENGYVLD .:::..:: :: : .:.. . . :.::::..: :::::.:::.::. : : .: : XP_016 HVKLQKVDPDSPLHSDLQILKEKEGIEYILLNFSFKDNFPFDPPFVRVVLPVLSGGLVHP 210 220 230 240 250 260 90 100 110 120 130 140 pF1KE3 GGAICMELLTPRGWSSAYTVEAVMRQFAASLVKGQGRICRKAGKSKKSFSRKEAEATFKS XP_016 SKGRWLNVLTVVCLD 270 >>XP_016878215 (OMIM: 612501) PREDICTED: ubiquitin-conju (298 aa) initn: 283 init1: 145 opt: 271 Z-score: 356.0 bits: 73.0 E(85289): 4.3e-13 Smith-Waterman score: 271; 50.0% identity (76.1% similar) in 88 aa overlap (1-81:194-281) 10 20 pF1KE3 MKELQDIARLSDR---FISVELVDESLFDW ::::.:: : .. . ::::...::.:: XP_016 LAILEKIRKTQRQDHLNGAVSGSVQASDRLMKELRDIYRSQSYKTGIYSVELINDSLYDW 170 180 190 200 210 220 30 40 50 60 70 80 pF1KE3 NVKLHQVDKDSVLWQDMK----ETNTEFILLNLTFPDNFPFSPPFMRVLSPRLENGYVLD .:::..:: :: : .:.. . . :.::::..: :::::.:::.::. : : .: : XP_016 HVKLQKVDPDSPLHSDLQILKEKEGIEYILLNFSFKDNFPFDPPFVRVVLPVLSGGLVHP 230 240 250 260 270 280 90 100 110 120 130 140 pF1KE3 GGAICMELLTPRGWSSAYTVEAVMRQFAASLVKGQGRICRKAGKSKKSFSRKEAEATFKS XP_016 SKGRWLNVLTVVCLD 290 >>XP_005254844 (OMIM: 612501) PREDICTED: ubiquitin-conju (314 aa) initn: 283 init1: 145 opt: 271 Z-score: 355.7 bits: 73.0 E(85289): 4.5e-13 Smith-Waterman score: 271; 50.0% identity (76.1% similar) in 88 aa overlap (1-81:210-297) 10 20 pF1KE3 MKELQDIARLSDR---FISVELVDESLFDW ::::.:: : .. . ::::...::.:: XP_005 LAILEKIRKTQRQDHLNGAVSGSVQASDRLMKELRDIYRSQSYKTGIYSVELINDSLYDW 180 190 200 210 220 230 30 40 50 60 70 80 pF1KE3 NVKLHQVDKDSVLWQDMK----ETNTEFILLNLTFPDNFPFSPPFMRVLSPRLENGYVLD .:::..:: :: : .:.. . . :.::::..: :::::.:::.::. : : .: : XP_005 HVKLQKVDPDSPLHSDLQILKEKEGIEYILLNFSFKDNFPFDPPFVRVVLPVLSGGLVHP 240 250 260 270 280 290 90 100 110 120 130 140 pF1KE3 GGAICMELLTPRGWSSAYTVEAVMRQFAASLVKGQGRICRKAGKSKKSFSRKEAEATFKS XP_005 SKGRWLNVLTVVCLD 300 310 >>NP_871618 (OMIM: 602963) ubiquitin-conjugating enzyme (147 aa) initn: 116 init1: 67 opt: 144 Z-score: 195.0 bits: 42.2 E(85289): 0.0004 Smith-Waterman score: 144; 25.5% identity (60.4% similar) in 106 aa overlap (2-107:8-103) 10 20 30 40 50 pF1KE3 MKELQDIARLSDRFISVELVDESLFDWNVKLHQVDKDSVLWQDMKETNTEFILL :::.:.:: :. : ...: :.. ... . . . ..: NP_871 MALKRINKELSDLARDPPAQCSAGPVGDDMFHWQA--------TIMGPNDSPYQGGVFFL 10 20 30 40 50 60 70 80 90 100 110 pF1KE3 NLTFPDNFPFSPPFMRVLSPRLENGYVLDGGAICMELLTPRGWSSAYTVEAVMRQFAASL .. :: ..::.:: . ... :. . . ..:.::...: . :: : :. :. NP_871 TIHFPTDYPFKPPKV-AFTTRIYHPNINSNGSICLDILRSQ-WSPALTISKVLLSICSLL 60 70 80 90 100 110 120 130 140 150 160 pF1KE3 VKGQGRICRKAGKSKKSFSRKEAEATFKSLVKTHEKYGWVTPPVSDG NP_871 CDPNPDDPLVPEIARIYKTDRDKYNRISREWTQKYAM 120 130 140 161 residues in 1 query sequences 60827320 residues in 85289 library sequences Tcomplib [36.3.4 Apr, 2011] (8 proc) start: Mon Nov 7 14:40:01 2016 done: Mon Nov 7 14:40:01 2016 Total Scan time: 5.370 Total Display time: 0.000 Function used was FASTA [36.3.4 Apr, 2011]