FASTA searches a protein or DNA sequence data bank 36.3.4 Apr, 2011 Please cite: W.R. Pearson & D.J. Lipman PNAS (1988) 85:2444-2448 Query: pF1KE1260, 595 aa 1>>>pF1KE1260 595 - 595 aa - 595 aa Library: human.CCDS.faa 18511270 residues in 32554 sequences Statistics: Expectation_n fit: rho(ln(x))= 11.2485+/-0.00103; mu= -3.9246+/- 0.062 mean_var=459.1022+/-95.303, 0's: 0 Z-trim(117.3): 783 B-trim: 1040 in 1/53 Lambda= 0.059858 statistics sampled from 17178 (18052) to 17178 sequences Algorithm: FASTA (3.7 Nov 2010) [optimized] Parameters: BL50 matrix (15:-5), open/ext: -10/-2 ktup: 2, E-join: 1 (0.81), E-opt: 0.2 (0.555), width: 16 Scan time: 3.810 The best scores are: opt bits E(32554) CCDS47259.1 PRDM6 gene_id:93166|Hs108|chr5 ( 595) 4210 377.8 2.1e-104 >>CCDS47259.1 PRDM6 gene_id:93166|Hs108|chr5 (595 aa) initn: 4210 init1: 4210 opt: 4210 Z-score: 1987.7 bits: 377.8 E(32554): 2.1e-104 Smith-Waterman score: 4210; 100.0% identity (100.0% similar) in 595 aa overlap (1-595:1-595) 10 20 30 40 50 60 pF1KE1 MLKPGDPGGSAFLKVDPAYLQHWQQLFPHGGAGPLKGSGAAGLLSAPQPLQPPPPPPPPE :::::::::::::::::::::::::::::::::::::::::::::::::::::::::::: CCDS47 MLKPGDPGGSAFLKVDPAYLQHWQQLFPHGGAGPLKGSGAAGLLSAPQPLQPPPPPPPPE 10 20 30 40 50 60 70 80 90 100 110 120 pF1KE1 RAEPPPDSLRPRPASLSSASSTPASSSTSASSASSCAAAAAAAALAGLSALPVSQLPVFA :::::::::::::::::::::::::::::::::::::::::::::::::::::::::::: CCDS47 RAEPPPDSLRPRPASLSSASSTPASSSTSASSASSCAAAAAAAALAGLSALPVSQLPVFA 70 80 90 100 110 120 130 140 150 160 170 180 pF1KE1 PLAAAAVAAEPLPPKELCLGATSGPGPVKCGGGGGGGGEGRGAPRFRCSAEELDYYLYGQ :::::::::::::::::::::::::::::::::::::::::::::::::::::::::::: CCDS47 PLAAAAVAAEPLPPKELCLGATSGPGPVKCGGGGGGGGEGRGAPRFRCSAEELDYYLYGQ 130 140 150 160 170 180 190 200 210 220 230 240 pF1KE1 QRMEIIPLNQHTSDPNNRCDMCADNRNGECPMHGPLHSLRRLVGTSSAAAAAPPPELPEW :::::::::::::::::::::::::::::::::::::::::::::::::::::::::::: CCDS47 QRMEIIPLNQHTSDPNNRCDMCADNRNGECPMHGPLHSLRRLVGTSSAAAAAPPPELPEW 190 200 210 220 230 240 250 260 270 280 290 300 pF1KE1 LRDLPREVCLCTSTVPGLAYGICAAQRIQQGTWIGPFQGVLLPPEKVQAGAVRNTQHLWE :::::::::::::::::::::::::::::::::::::::::::::::::::::::::::: CCDS47 LRDLPREVCLCTSTVPGLAYGICAAQRIQQGTWIGPFQGVLLPPEKVQAGAVRNTQHLWE 250 260 270 280 290 300 310 320 330 340 350 360 pF1KE1 IYDQDGTLQHFIDGGEPSKSSWMRYIRCARHCGEQNLTVVQYRSNIFYRACIDIPRGTEL :::::::::::::::::::::::::::::::::::::::::::::::::::::::::::: CCDS47 IYDQDGTLQHFIDGGEPSKSSWMRYIRCARHCGEQNLTVVQYRSNIFYRACIDIPRGTEL 310 320 330 340 350 360 370 380 390 400 410 420 pF1KE1 LVWYNDSYTSFFGIPLQCIAQDENLNVPSTVMEAMCRQDALQPFNKSSKLAPTTQQRSVV :::::::::::::::::::::::::::::::::::::::::::::::::::::::::::: CCDS47 LVWYNDSYTSFFGIPLQCIAQDENLNVPSTVMEAMCRQDALQPFNKSSKLAPTTQQRSVV 370 380 390 400 410 420 430 440 450 460 470 480 pF1KE1 FPQTPCSRNFSLLDKSGPIESGFNQINVKNQRVLASPTSTSQLHSEFSDWHLWKCGQCFK :::::::::::::::::::::::::::::::::::::::::::::::::::::::::::: CCDS47 FPQTPCSRNFSLLDKSGPIESGFNQINVKNQRVLASPTSTSQLHSEFSDWHLWKCGQCFK 430 440 450 460 470 480 490 500 510 520 530 540 pF1KE1 TFTQRILLQMHVCTQNPDRPYQCGHCSQSFSQPSELRNHVVTHSSDRPFKCGYCGRAFAG :::::::::::::::::::::::::::::::::::::::::::::::::::::::::::: CCDS47 TFTQRILLQMHVCTQNPDRPYQCGHCSQSFSQPSELRNHVVTHSSDRPFKCGYCGRAFAG 490 500 510 520 530 540 550 560 570 580 590 pF1KE1 ATTLNNHIRTHTGEKPFKCERCERSFTQATQLSRHQRMPNECKPITESPESIEVD ::::::::::::::::::::::::::::::::::::::::::::::::::::::: CCDS47 ATTLNNHIRTHTGEKPFKCERCERSFTQATQLSRHQRMPNECKPITESPESIEVD 550 560 570 580 590 595 residues in 1 query sequences 18511270 residues in 32554 library sequences Tcomplib [36.3.4 Apr, 2011] (8 proc) start: Thu Nov 3 03:48:32 2016 done: Thu Nov 3 03:48:33 2016 Total Scan time: 3.810 Total Display time: -0.010 Function used was FASTA [36.3.4 Apr, 2011]