Result of FASTA (omim) for
pFN21AB5004
FASTA searches a protein or DNA sequence data bank 36.3.4 Apr, 2011
Please cite:
W.R. Pearson & D.J. Lipman PNAS (1988) 85:2444-2448
Query: pF1KB5004, 382 aa
1>>>pF1KB5004 382 - 382 aa - 382 aa
Library: /omim/omim.rfq.tfa
60827320 residues in 85289 sequences
Statistics: Expectation_n fit: rho(ln(x))= 4.6859+/-0.000329; mu= 19.7302+/- 0.020
mean_var=63.8449+/-13.021, 0's: 0 Z-trim(114.5): 108 B-trim: 1300 in 1/53
Lambda= 0.160513
statistics sampled from 24294 (24417) to 24294 sequences
Algorithm: FASTA (3.7 Nov 2010) [optimized]
Parameters: BL50 matrix (15:-5), open/ext: -10/-2
ktup: 2, E-join: 1 (0.665), E-opt: 0.2 (0.286), width: 16
Scan time: 7.520
The best scores are: opt bits E(85289)
NP_476502 (OMIM: 611248) kelch domain-containing p ( 382) 2731 641.2 1.2e-183
NP_006758 (OMIM: 600574,615670,616564) leucine-zip ( 840) 280 73.9 1.6e-12
XP_016869672 (OMIM: 605962) PREDICTED: rab9 effect ( 241) 256 67.9 2.9e-11
NP_001167624 (OMIM: 605962) rab9 effector protein ( 321) 256 68.0 3.6e-11
XP_005251698 (OMIM: 605962) PREDICTED: rab9 effect ( 329) 256 68.0 3.6e-11
XP_011516422 (OMIM: 605962) PREDICTED: rab9 effect ( 300) 247 65.9 1.4e-10
XP_016869668 (OMIM: 605962) PREDICTED: rab9 effect ( 305) 247 65.9 1.5e-10
NP_005824 (OMIM: 605962) rab9 effector protein wit ( 372) 247 66.0 1.7e-10
XP_016869666 (OMIM: 605962) PREDICTED: rab9 effect ( 372) 247 66.0 1.7e-10
NP_001167623 (OMIM: 605962) rab9 effector protein ( 372) 247 66.0 1.7e-10
XP_005251697 (OMIM: 605962) PREDICTED: rab9 effect ( 380) 247 66.0 1.7e-10
NP_751943 (OMIM: 611281) kelch domain-containing p ( 406) 233 62.7 1.7e-09
XP_011534724 (OMIM: 611281) PREDICTED: kelch domai ( 354) 232 62.5 1.8e-09
NP_001193976 (OMIM: 603130) attractin isoform 4 [H (1156) 216 59.2 5.7e-08
NP_647538 (OMIM: 603130) attractin isoform 2 prepr (1272) 216 59.2 6.2e-08
NP_001310261 (OMIM: 603130) attractin isoform 5 pr (1289) 216 59.2 6.2e-08
NP_647537 (OMIM: 603130) attractin isoform 1 prepr (1429) 216 59.3 6.7e-08
XP_016884960 (OMIM: 300019,309541) PREDICTED: host (2013) 211 58.2 1.9e-07
NP_005325 (OMIM: 300019,309541) host cell factor 1 (2035) 211 58.2 2e-07
XP_011529450 (OMIM: 300019,309541) PREDICTED: host (2038) 211 58.2 2e-07
XP_011529449 (OMIM: 300019,309541) PREDICTED: host (2039) 211 58.2 2e-07
XP_006724879 (OMIM: 300019,309541) PREDICTED: host (2079) 211 58.2 2e-07
XP_006724878 (OMIM: 300019,309541) PREDICTED: host (2080) 211 58.2 2e-07
NP_001003760 (OMIM: 610749) kelch-like protein 31 ( 634) 179 50.4 1.4e-05
XP_016866347 (OMIM: 610749) PREDICTED: kelch-like ( 634) 179 50.4 1.4e-05
XP_005249164 (OMIM: 610749) PREDICTED: kelch-like ( 634) 179 50.4 1.4e-05
XP_016874731 (OMIM: 607926) PREDICTED: host cell f ( 636) 170 48.3 5.9e-05
XP_016874730 (OMIM: 607926) PREDICTED: host cell f ( 736) 170 48.4 6.6e-05
NP_037452 (OMIM: 607926) host cell factor 2 [Homo ( 792) 170 48.4 6.9e-05
XP_006710761 (OMIM: 609109) PREDICTED: F-box only ( 717) 168 47.9 8.9e-05
NP_061867 (OMIM: 609109) F-box only protein 42 [Ho ( 717) 168 47.9 8.9e-05
XP_016856991 (OMIM: 609109) PREDICTED: F-box only ( 486) 165 47.1 0.00011
XP_016856992 (OMIM: 609109) PREDICTED: F-box only ( 486) 165 47.1 0.00011
XP_006713079 (OMIM: 246000,613169) PREDICTED: kelc ( 364) 160 45.8 0.00019
XP_005264997 (OMIM: 246000,613169) PREDICTED: kelc ( 227) 154 44.2 0.00035
XP_006713078 (OMIM: 246000,613169) PREDICTED: kelc ( 371) 153 44.2 0.0006
XP_016869670 (OMIM: 605962) PREDICTED: rab9 effect ( 267) 140 41.1 0.0038
XP_016869669 (OMIM: 605962) PREDICTED: rab9 effect ( 267) 140 41.1 0.0038
XP_016869671 (OMIM: 605962) PREDICTED: rab9 effect ( 267) 140 41.1 0.0038
XP_005251701 (OMIM: 605962) PREDICTED: rab9 effect ( 275) 140 41.1 0.0039
NP_067646 (OMIM: 614522) kelch-like protein 12 iso ( 568) 143 42.0 0.0041
XP_016869667 (OMIM: 605962) PREDICTED: rab9 effect ( 318) 140 41.1 0.0043
NP_001289980 (OMIM: 614522) kelch-like protein 12 ( 606) 143 42.1 0.0043
XP_005251699 (OMIM: 605962) PREDICTED: rab9 effect ( 326) 140 41.1 0.0044
NP_001161775 (OMIM: 300655) kelch-like protein 13 ( 613) 141 41.6 0.006
NP_001161773 (OMIM: 300655) kelch-like protein 13 ( 639) 141 41.6 0.0062
XP_016885439 (OMIM: 300655) PREDICTED: kelch-like ( 639) 141 41.6 0.0062
NP_001161774 (OMIM: 300655) kelch-like protein 13 ( 639) 141 41.6 0.0062
NP_001161772 (OMIM: 300655) kelch-like protein 13 ( 649) 141 41.6 0.0063
XP_011529713 (OMIM: 300655) PREDICTED: kelch-like ( 655) 141 41.6 0.0063
>>NP_476502 (OMIM: 611248) kelch domain-containing prote (382 aa)
initn: 2731 init1: 2731 opt: 2731 Z-score: 3418.1 bits: 641.2 E(85289): 1.2e-183
Smith-Waterman score: 2731; 100.0% identity (100.0% similar) in 382 aa overlap (1-382:1-382)
10 20 30 40 50 60
pF1KB5 MLRWTVHLEGGPRRVNHAAVAVGHRVYSFGGYCSGEDYETLRQIDVHIFNAVSLRWTKLP
::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
NP_476 MLRWTVHLEGGPRRVNHAAVAVGHRVYSFGGYCSGEDYETLRQIDVHIFNAVSLRWTKLP
10 20 30 40 50 60
70 80 90 100 110 120
pF1KB5 PVKSAIRGQAPVVPYMRYGHSTVLIDDTVLLWGGRNDTEGACNVLYAFDVNTHKWFTPRV
::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
NP_476 PVKSAIRGQAPVVPYMRYGHSTVLIDDTVLLWGGRNDTEGACNVLYAFDVNTHKWFTPRV
70 80 90 100 110 120
130 140 150 160 170 180
pF1KB5 SGTVPGARDGHSACVLGKIMYIFGGYEQQADCFSNDIHKLDTSTMTWTLICTKGSPARWR
::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
NP_476 SGTVPGARDGHSACVLGKIMYIFGGYEQQADCFSNDIHKLDTSTMTWTLICTKGSPARWR
130 140 150 160 170 180
190 200 210 220 230 240
pF1KB5 DFHSATMLGSHMYVFGGRADRFGPFHSNNEIYCNRIRVFDTRTEAWLDCPPTPVLPEGRR
::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
NP_476 DFHSATMLGSHMYVFGGRADRFGPFHSNNEIYCNRIRVFDTRTEAWLDCPPTPVLPEGRR
190 200 210 220 230 240
250 260 270 280 290 300
pF1KB5 SHSAFGYNGELYIFGGYNARLNRHFHDLWKFNPVSFTWKKIEPKGKGPCPRRRQCCCIVG
::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
NP_476 SHSAFGYNGELYIFGGYNARLNRHFHDLWKFNPVSFTWKKIEPKGKGPCPRRRQCCCIVG
250 260 270 280 290 300
310 320 330 340 350 360
pF1KB5 DKIVLFGGTSPSPEEGLGDEFDLIDHSDLHILDFSPSLKTLCKLAVIQYNLDQSCLPHDI
::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
NP_476 DKIVLFGGTSPSPEEGLGDEFDLIDHSDLHILDFSPSLKTLCKLAVIQYNLDQSCLPHDI
310 320 330 340 350 360
370 380
pF1KB5 RWELNAMTTNSNISRPIVSSHG
::::::::::::::::::::::
NP_476 RWELNAMTTNSNISRPIVSSHG
370 380
>>NP_006758 (OMIM: 600574,615670,616564) leucine-zipper- (840 aa)
initn: 281 init1: 128 opt: 280 Z-score: 346.0 bits: 73.9 E(85289): 1.6e-12
Smith-Waterman score: 301; 29.5% identity (55.6% similar) in 241 aa overlap (113-336:52-278)
90 100 110 120 130 140
pF1KB5 VLIDDTVLLWGGRNDTEGACNVLYAFDVNTHKWFT-PRVSGTVPGARDGHSACVLGKIMY
:.: : . : . :. :.. . .:
NP_006 SKVAPSVDFDHSCSDSVEYLTLNFGPFETVHRWRRLPPCDEFVGARRSKHTVVAYKDAIY
30 40 50 60 70 80
150 160 170 180 190 200
pF1KB5 IFGGYEQQADCFSNDIHKLDTSTMTWTLICTKGSPARWRDFHSATMLGSHMYVFGGRADR
.::: ... . ::. ..:.. .: : :.: : :::.. :: :.:::: .
NP_006 VFGG--DNGKTMLNDLLRFDVKDCSWCRAFTTGTPPAPRYHHSAVVYGSSMFVFGGYT--
90 100 110 120 130
210 220 230 240 250
pF1KB5 FGPFHSNNEIYCNRIRVFDTR--TEAWLDCPPTPVLPEGRRSHSAFGYNGELYIFGGY--
: ..::... :. .:. . : : . :: .: .:.: :. .:.::.::
NP_006 -GDIYSNSNLK-NKNDLFEYKFATGQWTEWKIEGRLPVARSAHGATVYSDKLWIFAGYDG
140 150 160 170 180 190
260 270 280 290 300 310
pF1KB5 NARLNRHFHDLWK--FNPVSFT-WKKIEPKGKGPCPRRRQCC----CIVGDKIVLFGGTS
::::: :.: .. .: :... .:. : : .:: . ::. .:.: :
NP_006 NARLN----DMWTIGLQDRELTCWEEVAQSGEIP-P---SCCNFPVAVCRDKMFVFSGQS
200 210 220 230 240
320 330 340 350 360
pF1KB5 PSPEEGLGDEFDLIDHS-----DLHILDFSPSLKTLCKLAVIQYNLDQSCLPHDIRWELN
. . .:.. :.. :.: ::
NP_006 GAKITNNLFQFEFKDKTWTRIPTEHLLRGSPPPPQRRYGHTMVAFDRHLYVFGGAADNTL
250 260 270 280 290 300
370 380
pF1KB5 AMTTNSNISRPIVSSHG
NP_006 PNELHCYDVDFQTWEVVQPSSDSEVGGAEVPERACASEEVPTLTYEERVGFKKSRDVFGL
310 320 330 340 350 360
>--
initn: 132 init1: 78 opt: 173 Z-score: 212.1 bits: 49.1 E(85289): 4.5e-05
Smith-Waterman score: 173; 30.3% identity (55.3% similar) in 132 aa overlap (74-200:281-408)
50 60 70 80 90 100
pF1KB5 IDVHIFNAVSLRWTKLPPVKSAIRGQAPVVPYMRYGHSTVLIDDTVLLWGGRNDTEGACN
: ::::. : .: . ..:: :. :
NP_006 ITNNLFQFEFKDKTWTRIPTEHLLRGSPPPPQRRYGHTMVAFDRHLYVFGGAADNTLP-N
260 270 280 290 300
110 120 130 140 150
pF1KB5 VLYAFDVNTHKW--FTPRVSGTVPGARDGHSACVLGKIMYIFGGYEQQADCF--SNDIHK
:. .::. . : : .. : ::. . ::. .. . ::... : : :.
NP_006 ELHCYDVDFQTWEVVQPSSDSEVGGAEVPERACASEEVPTL--TYEERVG-FKKSRDVFG
310 320 330 340 350 360
160 170 180 190 200 210
pF1KB5 LDTSTMTWTLICTKGSP-ARWRDFHSATMLGSHMYVFGGRADRFGPFHSNNEIYCNRIRV
:: .: . .: : ::.:..... ::.::: .:
NP_006 LDFGTTSAKQPTQPASELPSGRLFHAAAVISDAMYIFGGTVDNNIRSGEMYRFQFSCYPK
370 380 390 400 410 420
220 230 240 250 260 270
pF1KB5 FDTRTEAWLDCPPTPVLPEGRRSHSAFGYNGELYIFGGYNARLNRHFHDLWKFNPVSFTW
NP_006 CTLHEDYGRLWESRQFCDVEFVLGEKEECVQGHVAIVTARSRWLRRKITQARERLAQKLE
430 440 450 460 470 480
>>XP_016869672 (OMIM: 605962) PREDICTED: rab9 effector p (241 aa)
initn: 176 init1: 112 opt: 256 Z-score: 323.3 bits: 67.9 E(85289): 2.9e-11
Smith-Waterman score: 311; 30.7% identity (55.2% similar) in 212 aa overlap (115-312:18-213)
90 100 110 120 130
pF1KB5 IDDTVLLWGGRNDTEGACNVLYAFDVNTHKWFTPRVSGTVPGARDGHSACVL--------
:.: : : : :: ::: :
XP_016 MKQLPVLEPGDKPRKATWYTLTVPGDSPCARVGHSCSYLPPVGNAKR
10 20 30 40
140 150 160 170 180 190
pF1KB5 GKIMYIFGGYEQQADCFSNDIHKLDTSTMTWTLICTKGSPARWRDFH-SATMLGSHMYVF
::. .: :: . . . :: :.: .: : ::: . . : : :: :.. .:...:::
XP_016 GKV-FIVGGANPNRS-FS-DVHTMDLETRTWTTPEVTSPPPSPRTFHTSSAAIGNQLYVF
50 60 70 80 90 100
200 210 220 230 240 250
pF1KB5 GGRADRFGPFHSNNEIYCNRIRVFDTRTEAW-----LDCPPTPVLPEGRRSHSAFGYNGE
:: ..: . . . ....:::. : .: : ::.: :..: . . .
XP_016 GG-GER-----GAQPVQDTKLHVFDANTLTWSQPETLGNPPSP-----RHGHVMVAAGTK
110 120 130 140 150
260 270 280 290 300 310
pF1KB5 LYIFGGYNARLNRHFHDLWKFNPVSFTWKKIEPKGKGPCPRRRQCCCIVGDKIVLFGGTS
:.: :: . .: . :: .. .. :.:..: : .: . .: .. .::: .
XP_016 LFIHGGLAG--DRFYDDLHCIDISDMKWQKLNPTGAAPAGCAAHSAVAMGKHVYIFGGMT
160 170 180 190 200 210
320 330 340 350 360 370
pF1KB5 PSPEEGLGDEFDLIDHSDLHILDFSPSLKTLCKLAVIQYNLDQSCLPHDIRWELNAMTTN
:.
XP_016 PAGALDTMYQYHTETGFHRVSQDGLHLLTS
220 230 240
>>NP_001167624 (OMIM: 605962) rab9 effector protein with (321 aa)
initn: 203 init1: 112 opt: 256 Z-score: 321.6 bits: 68.0 E(85289): 3.6e-11
Smith-Waterman score: 311; 30.7% identity (55.2% similar) in 212 aa overlap (115-312:18-213)
90 100 110 120 130
pF1KB5 IDDTVLLWGGRNDTEGACNVLYAFDVNTHKWFTPRVSGTVPGARDGHSACVL--------
:.: : : : :: ::: :
NP_001 MKQLPVLEPGDKPRKATWYTLTVPGDSPCARVGHSCSYLPPVGNAKR
10 20 30 40
140 150 160 170 180 190
pF1KB5 GKIMYIFGGYEQQADCFSNDIHKLDTSTMTWTLICTKGSPARWRDFH-SATMLGSHMYVF
::. .: :: . . . :: :.: .: : ::: . . : : :: :.. .:...:::
NP_001 GKV-FIVGGANPNRS-FS-DVHTMDLETRTWTTPEVTSPPPSPRTFHTSSAAIGNQLYVF
50 60 70 80 90 100
200 210 220 230 240 250
pF1KB5 GGRADRFGPFHSNNEIYCNRIRVFDTRTEAW-----LDCPPTPVLPEGRRSHSAFGYNGE
:: ..: . . . ....:::. : .: : ::.: :..: . . .
NP_001 GG-GER-----GAQPVQDTKLHVFDANTLTWSQPETLGNPPSP-----RHGHVMVAAGTK
110 120 130 140 150
260 270 280 290 300 310
pF1KB5 LYIFGGYNARLNRHFHDLWKFNPVSFTWKKIEPKGKGPCPRRRQCCCIVGDKIVLFGGTS
:.: :: . .: . :: .. .. :.:..: : .: . .: .. .::: .
NP_001 LFIHGGLAG--DRFYDDLHCIDISDMKWQKLNPTGAAPAGCAAHSAVAMGKHVYIFGGMT
160 170 180 190 200 210
320 330 340 350 360 370
pF1KB5 PSPEEGLGDEFDLIDHSDLHILDFSPSLKTLCKLAVIQYNLDQSCLPHDIRWELNAMTTN
:.
NP_001 PAGALDTMYQYHTEEQHWTLLKFDTLLPPGRLDHSMCIIPWPVTCASEKEDSNSLTLNHE
220 230 240 250 260 270
>>XP_005251698 (OMIM: 605962) PREDICTED: rab9 effector p (329 aa)
initn: 203 init1: 112 opt: 256 Z-score: 321.5 bits: 68.0 E(85289): 3.6e-11
Smith-Waterman score: 311; 30.7% identity (55.2% similar) in 212 aa overlap (115-312:26-221)
90 100 110 120 130
pF1KB5 IDDTVLLWGGRNDTEGACNVLYAFDVNTHKWFTPRVSGTVPGARDGHSACVL--------
:.: : : : :: ::: :
XP_005 MQEIVEDTMKQLPVLEPGDKPRKATWYTLTVPGDSPCARVGHSCSYLPPVGNAKR
10 20 30 40 50
140 150 160 170 180 190
pF1KB5 GKIMYIFGGYEQQADCFSNDIHKLDTSTMTWTLICTKGSPARWRDFH-SATMLGSHMYVF
::. .: :: . . . :: :.: .: : ::: . . : : :: :.. .:...:::
XP_005 GKV-FIVGGANPNRS-FS-DVHTMDLETRTWTTPEVTSPPPSPRTFHTSSAAIGNQLYVF
60 70 80 90 100 110
200 210 220 230 240 250
pF1KB5 GGRADRFGPFHSNNEIYCNRIRVFDTRTEAW-----LDCPPTPVLPEGRRSHSAFGYNGE
:: ..: . . . ....:::. : .: : ::.: :..: . . .
XP_005 GG-GER-----GAQPVQDTKLHVFDANTLTWSQPETLGNPPSP-----RHGHVMVAAGTK
120 130 140 150 160
260 270 280 290 300 310
pF1KB5 LYIFGGYNARLNRHFHDLWKFNPVSFTWKKIEPKGKGPCPRRRQCCCIVGDKIVLFGGTS
:.: :: . .: . :: .. .. :.:..: : .: . .: .. .::: .
XP_005 LFIHGGLAG--DRFYDDLHCIDISDMKWQKLNPTGAAPAGCAAHSAVAMGKHVYIFGGMT
170 180 190 200 210
320 330 340 350 360 370
pF1KB5 PSPEEGLGDEFDLIDHSDLHILDFSPSLKTLCKLAVIQYNLDQSCLPHDIRWELNAMTTN
:.
XP_005 PAGALDTMYQYHTEEQHWTLLKFDTLLPPGRLDHSMCIIPWPVTCASEKEDSNSLTLNHE
220 230 240 250 260 270
>>XP_011516422 (OMIM: 605962) PREDICTED: rab9 effector p (300 aa)
initn: 215 init1: 112 opt: 247 Z-score: 310.7 bits: 65.9 E(85289): 1.4e-10
Smith-Waterman score: 313; 29.4% identity (55.9% similar) in 238 aa overlap (25-256:57-268)
10 20 30 40 50
pF1KB5 MLRWTVHLEGGPRRVNHAAVAVGHRVYSFGGYCSGEDYETLRQIDVHIFNAVSL
.:. :: .... ::: .. .
XP_011 YTLTVPGDSPCARVGHSCSYLPPVGNAKRGKVFIVGGANPNRSFS-----DVHTMDLGKH
30 40 50 60 70 80
60 70 80 90 100 110
pF1KB5 RWTKLPPVKSAIRGQAPVVPYMRYGHSTVL---IDDTVLLWGGRNDTEGACNVLYAFDVN
.: : : : : :: :.. . : . ..:: :.. : : : ... .
XP_011 QWD-LDTCK----GLLP-----RYEHASFIPSCTPDRIWVFGGANQS-GNRNCLQVLNPE
90 100 110 120 130
120 130 140 150 160
pF1KB5 THKWFTPRVSGTVPGARDGH-SACVLGKIMYIFGGYEQQADCFSND-IHKLDTSTMTWTL
:. : ::.:.. :. : : :. ..:. .:.::: :. :. .. .: .:..:.::.
XP_011 TRTWTTPEVTSPPPSPRTFHTSSAAIGNQLYVFGGGERGAQPVQDTKLHVFDANTLTWSQ
140 150 160 170 180 190
170 180 190 200 210 220
pF1KB5 ICTKGSPARWRDFHSATMLGSHMYVFGGRA-DRFGPFHSNNEIYCNRIRVFDTRTEAWLD
: :.: : : . :..... :: : ::: ....: : . : . :
XP_011 PETLGNPPSPRHGHVMVAAGTKLFIHGGLAGDRF-----YDDLHC--IDISDMK---WQK
200 210 220 230 240
230 240 250 260 270 280
pF1KB5 CPPTPVLPEGRRSHSAFGYNGELYIFGGYNARLNRHFHDLWKFNPVSFTWKKIEPKGKGP
:: . : : .::: ... ..:::::
XP_011 LNPTGAAPAGCAAHSAVAMGKHVYIFGGMTPAGALDTMYQYHTETGFHRVSQDGLHLLTS
250 260 270 280 290 300
>>XP_016869668 (OMIM: 605962) PREDICTED: rab9 effector p (305 aa)
initn: 203 init1: 112 opt: 247 Z-score: 310.6 bits: 65.9 E(85289): 1.5e-10
Smith-Waterman score: 314; 27.9% identity (56.3% similar) in 229 aa overlap (77-299:19-234)
50 60 70 80 90 100
pF1KB5 HIFNAVSLRWTKLPPVKSAIRGQAPVVPYMRYGHSTVL---IDDTVLLWGGRNDTEGACN
:: :.. . : . ..:: :.. : :
XP_016 MDLGKHQWDLDTCKGLLPRYEHASFIPSCTPDRIWVFGGANQS-GNRN
10 20 30 40
110 120 130 140 150 160
pF1KB5 VLYAFDVNTHKWFTPRVSGTVPGARDGH-SACVLGKIMYIFGGYEQQADCFSND-IHKLD
: ... .:. : ::.:.. :. : : :. ..:. .:.::: :. :. .. .: .:
XP_016 CLQVLNPETRTWTTPEVTSPPPSPRTFHTSSAAIGNQLYVFGGGERGAQPVQDTKLHVFD
50 60 70 80 90 100
170 180 190 200 210 220
pF1KB5 TSTMTWTLICTKGSPARWRDFHSATMLGSHMYVFGGRA-DRFGPFHSNNEIYCNRIRVFD
..:.::. : :.: : : . :..... :: : ::: ....: : . :
XP_016 ANTLTWSQPETLGNPPSPRHGHVMVAAGTKLFIHGGLAGDRF-----YDDLHC--IDISD
110 120 130 140 150 160
230 240 250 260 270 280
pF1KB5 TRTEAWLDCPPTPVLPEGRRSHSAFGYNGELYIFGGYNARLNRHFHDLWKFNPVSFTWKK
. : :: . : : .::: ... ..:::::.. . ..... :
XP_016 MK---WQKLNPTGAAPAGCAAHSAVAMGKHVYIFGGMTP--AGALDTMYQYHTEEQHWTL
170 180 190 200 210
290 300 310 320 330 340
pF1KB5 IEPKGKGPCPRRRQCCCIVGDKIVLFGGTSPSPEEGLGDEFDLIDHSDLHILDFSPSLKT
.. : : . ::.
XP_016 LKFDTLLPPGRLDHSMCIIPWPVTCASEKEDSNSLTLNHEAEKEDSADKVMSHSGDSHEE
220 230 240 250 260 270
>>NP_005824 (OMIM: 605962) rab9 effector protein with ke (372 aa)
initn: 242 init1: 112 opt: 247 Z-score: 309.5 bits: 66.0 E(85289): 1.7e-10
Smith-Waterman score: 318; 26.0% identity (53.7% similar) in 281 aa overlap (25-299:49-301)
10 20 30 40 50
pF1KB5 MLRWTVHLEGGPRRVNHAAVAVGHRVYSFGGYCSGEDYETLRQIDVHIFNAVSL
.:. :: .... ::: .. .
NP_005 YTLTVPGDSPCARVGHSCSYLPPVGNAKRGKVFIVGGANPNRSFS-----DVHTMDLGKH
20 30 40 50 60 70
60 70 80 90 100 110
pF1KB5 RWTKLPPVKSAIRGQAPVVPYMRYGHSTVL---IDDTVLLWGGRNDTEGACNVLYAFDVN
.: .. .: : :: :.. . : . ..:: :.. : : : ... .
NP_005 QWDL-----DTCKGLLP-----RYEHASFIPSCTPDRIWVFGGANQS-GNRNCLQVLNPE
80 90 100 110 120
120 130 140 150 160
pF1KB5 THKWFTPRVSGTVPGARDGH-SACVLGKIMYIFGGYEQQADCFSND-IHKLDTSTMTWTL
:. : ::.:.. :. : : :. ..:. .:.::: :. :. .. .: .:..:.::.
NP_005 TRTWTTPEVTSPPPSPRTFHTSSAAIGNQLYVFGGGERGAQPVQDTKLHVFDANTLTWSQ
130 140 150 160 170 180
170 180 190 200 210 220
pF1KB5 ICTKGSPARWRDFHSATMLGSHMYVFGGRA-DRFGPFHSNNEIYCNRIRVFDTRTEAWLD
: :.: : : . :..... :: : ::: ....: : . : . :
NP_005 PETLGNPPSPRHGHVMVAAGTKLFIHGGLAGDRF-----YDDLHC--IDISDMK---WQK
190 200 210 220 230
230 240 250 260 270 280
pF1KB5 CPPTPVLPEGRRSHSAFGYNGELYIFGGYNARLNRHFHDLWKFNPVSFTWKKIEPKGKGP
:: . : : .::: ... ..:::::.. . ..... : .. :
NP_005 LNPTGAAPAGCAAHSAVAMGKHVYIFGGMTP--AGALDTMYQYHTEEQHWTLLKFDTLLP
240 250 260 270 280 290
290 300 310 320 330 340
pF1KB5 CPRRRQCCCIVGDKIVLFGGTSPSPEEGLGDEFDLIDHSDLHILDFSPSLKTLCKLAVIQ
: . ::.
NP_005 PGRLDHSMCIIPWPVTCASEKEDSNSLTLNHEAEKEDSADKVMSHSGDSHEESQTATLLC
300 310 320 330 340 350
>>XP_016869666 (OMIM: 605962) PREDICTED: rab9 effector p (372 aa)
initn: 242 init1: 112 opt: 247 Z-score: 309.5 bits: 66.0 E(85289): 1.7e-10
Smith-Waterman score: 318; 26.0% identity (53.7% similar) in 281 aa overlap (25-299:49-301)
10 20 30 40 50
pF1KB5 MLRWTVHLEGGPRRVNHAAVAVGHRVYSFGGYCSGEDYETLRQIDVHIFNAVSL
.:. :: .... ::: .. .
XP_016 YTLTVPGDSPCARVGHSCSYLPPVGNAKRGKVFIVGGANPNRSFS-----DVHTMDLGKH
20 30 40 50 60 70
60 70 80 90 100 110
pF1KB5 RWTKLPPVKSAIRGQAPVVPYMRYGHSTVL---IDDTVLLWGGRNDTEGACNVLYAFDVN
.: .. .: : :: :.. . : . ..:: :.. : : : ... .
XP_016 QWDL-----DTCKGLLP-----RYEHASFIPSCTPDRIWVFGGANQS-GNRNCLQVLNPE
80 90 100 110 120
120 130 140 150 160
pF1KB5 THKWFTPRVSGTVPGARDGH-SACVLGKIMYIFGGYEQQADCFSND-IHKLDTSTMTWTL
:. : ::.:.. :. : : :. ..:. .:.::: :. :. .. .: .:..:.::.
XP_016 TRTWTTPEVTSPPPSPRTFHTSSAAIGNQLYVFGGGERGAQPVQDTKLHVFDANTLTWSQ
130 140 150 160 170 180
170 180 190 200 210 220
pF1KB5 ICTKGSPARWRDFHSATMLGSHMYVFGGRA-DRFGPFHSNNEIYCNRIRVFDTRTEAWLD
: :.: : : . :..... :: : ::: ....: : . : . :
XP_016 PETLGNPPSPRHGHVMVAAGTKLFIHGGLAGDRF-----YDDLHC--IDISDMK---WQK
190 200 210 220 230
230 240 250 260 270 280
pF1KB5 CPPTPVLPEGRRSHSAFGYNGELYIFGGYNARLNRHFHDLWKFNPVSFTWKKIEPKGKGP
:: . : : .::: ... ..:::::.. . ..... : .. :
XP_016 LNPTGAAPAGCAAHSAVAMGKHVYIFGGMTP--AGALDTMYQYHTEEQHWTLLKFDTLLP
240 250 260 270 280 290
290 300 310 320 330 340
pF1KB5 CPRRRQCCCIVGDKIVLFGGTSPSPEEGLGDEFDLIDHSDLHILDFSPSLKTLCKLAVIQ
: . ::.
XP_016 PGRLDHSMCIIPWPVTCASEKEDSNSLTLNHEAEKEDSADKVMSHSGDSHEESQTATLLC
300 310 320 330 340 350
>>NP_001167623 (OMIM: 605962) rab9 effector protein with (372 aa)
initn: 242 init1: 112 opt: 247 Z-score: 309.5 bits: 66.0 E(85289): 1.7e-10
Smith-Waterman score: 318; 26.0% identity (53.7% similar) in 281 aa overlap (25-299:49-301)
10 20 30 40 50
pF1KB5 MLRWTVHLEGGPRRVNHAAVAVGHRVYSFGGYCSGEDYETLRQIDVHIFNAVSL
.:. :: .... ::: .. .
NP_001 YTLTVPGDSPCARVGHSCSYLPPVGNAKRGKVFIVGGANPNRSFS-----DVHTMDLGKH
20 30 40 50 60 70
60 70 80 90 100 110
pF1KB5 RWTKLPPVKSAIRGQAPVVPYMRYGHSTVL---IDDTVLLWGGRNDTEGACNVLYAFDVN
.: .. .: : :: :.. . : . ..:: :.. : : : ... .
NP_001 QWDL-----DTCKGLLP-----RYEHASFIPSCTPDRIWVFGGANQS-GNRNCLQVLNPE
80 90 100 110 120
120 130 140 150 160
pF1KB5 THKWFTPRVSGTVPGARDGH-SACVLGKIMYIFGGYEQQADCFSND-IHKLDTSTMTWTL
:. : ::.:.. :. : : :. ..:. .:.::: :. :. .. .: .:..:.::.
NP_001 TRTWTTPEVTSPPPSPRTFHTSSAAIGNQLYVFGGGERGAQPVQDTKLHVFDANTLTWSQ
130 140 150 160 170 180
170 180 190 200 210 220
pF1KB5 ICTKGSPARWRDFHSATMLGSHMYVFGGRA-DRFGPFHSNNEIYCNRIRVFDTRTEAWLD
: :.: : : . :..... :: : ::: ....: : . : . :
NP_001 PETLGNPPSPRHGHVMVAAGTKLFIHGGLAGDRF-----YDDLHC--IDISDMK---WQK
190 200 210 220 230
230 240 250 260 270 280
pF1KB5 CPPTPVLPEGRRSHSAFGYNGELYIFGGYNARLNRHFHDLWKFNPVSFTWKKIEPKGKGP
:: . : : .::: ... ..:::::.. . ..... : .. :
NP_001 LNPTGAAPAGCAAHSAVAMGKHVYIFGGMTP--AGALDTMYQYHTEEQHWTLLKFDTLLP
240 250 260 270 280 290
290 300 310 320 330 340
pF1KB5 CPRRRQCCCIVGDKIVLFGGTSPSPEEGLGDEFDLIDHSDLHILDFSPSLKTLCKLAVIQ
: . ::.
NP_001 PGRLDHSMCIIPWPVTCASEKEDSNSLTLNHEAEKEDSADKVMSHSGDSHEESQTATLLC
300 310 320 330 340 350
382 residues in 1 query sequences
60827320 residues in 85289 library sequences
Tcomplib [36.3.4 Apr, 2011] (8 proc)
start: Sat Nov 5 06:14:11 2016 done: Sat Nov 5 06:14:12 2016
Total Scan time: 7.520 Total Display time: 0.010
Function used was FASTA [36.3.4 Apr, 2011]