Result of FASTA (ccds) for pFN21AB4038
FASTA searches a protein or DNA sequence data bank 36.3.4 Apr, 2011
Please cite:
W.R. Pearson & D.J. Lipman PNAS (1988) 85:2444-2448

Query: pF1KB4038, 363 aa
  1>>>pF1KB4038 363 - 363 aa - 363 aa
Library: human.CCDS.faa
  18511270 residues in 32554 sequences

Statistics:  Expectation_n fit: rho(ln(x))= 7.6462+/-0.000773; mu= 7.9881+/- 0.047
 mean_var=158.0736+/-32.181, 0's: 0 Z-trim(114.8): 38  B-trim: 43 in 1/52
 Lambda= 0.102010
 statistics sampled from 15307 (15343) to 15307 sequences
Algorithm: FASTA (3.7 Nov 2010) [optimized]
Parameters: BL50 matrix (15:-5), open/ext: -10/-2
 ktup: 2, E-join: 1 (0.796), E-opt: 0.2 (0.471), width:  16
 Scan time:  3.080

The best scores are:                                      opt bits E(32554)
CCDS11286.1 RFFL gene_id:117584|Hs108|chr17        ( 363) 2533 383.9 1.2e-106
CCDS31915.1 RNF34 gene_id:80196|Hs108|chr12        ( 372)  981 155.5 6.8e-38
CCDS9221.1 RNF34 gene_id:80196|Hs108|chr12         ( 373)  981 155.5 6.8e-38
CCDS73538.1 RNF34 gene_id:80196|Hs108|chr12        ( 180)  607 100.2 1.4e-21


>>CCDS11286.1 RFFL gene_id:117584|Hs108|chr17             (363 aa)
 initn: 2533 init1: 2533 opt: 2533  Z-score: 2028.3  bits: 383.9 E(32554): 1.2e-106
Smith-Waterman score: 2533; 100.0% identity (100.0% similar) in 363 aa overlap (1-363:1-363)

               10        20        30        40        50        60
pF1KB4 MWATCCNWFCLDGQPEEVPPPQGARMQAYSNPGYSSFPSPTGLEPSCKSCGAHFANTARK
       ::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
CCDS11 MWATCCNWFCLDGQPEEVPPPQGARMQAYSNPGYSSFPSPTGLEPSCKSCGAHFANTARK
               10        20        30        40        50        60

               70        80        90       100       110       120
pF1KB4 QTCLDCKKNFCMTCSSQVGNGPRLCLLCQRFRATAFQREELMKMKVKDLRDYLSLHDIST
       ::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
CCDS11 QTCLDCKKNFCMTCSSQVGNGPRLCLLCQRFRATAFQREELMKMKVKDLRDYLSLHDIST
               70        80        90       100       110       120

              130       140       150       160       170       180
pF1KB4 EMCREKEELVLLVLGQQPVISQEDRTRASTLSPDFPEQQAFLTQPHSSMVPPTSPNLPSS
       ::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
CCDS11 EMCREKEELVLLVLGQQPVISQEDRTRASTLSPDFPEQQAFLTQPHSSMVPPTSPNLPSS
              130       140       150       160       170       180

              190       200       210       220       230       240
pF1KB4 SAQATSVPPAQVQENQQANGHVSQDQEEPVYLESVARVPAEDETQSIDSEDSFVPGRRAS
       ::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
CCDS11 SAQATSVPPAQVQENQQANGHVSQDQEEPVYLESVARVPAEDETQSIDSEDSFVPGRRAS
              190       200       210       220       230       240

              250       260       270       280       290       300
pF1KB4 LSDLTDLEDIEGLTVRQLKEILARNFVNYKGCCEKWELMERVTRLYKDQKGLQHLVSGAE
       ::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
CCDS11 LSDLTDLEDIEGLTVRQLKEILARNFVNYKGCCEKWELMERVTRLYKDQKGLQHLVSGAE
              250       260       270       280       290       300

              310       320       330       340       350       360
pF1KB4 DQNGGAVPSGLEENLCKICMDSPIDCVLLECGHMVTCTKCGKRMNECPICRQYVIRAVHV
       ::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
CCDS11 DQNGGAVPSGLEENLCKICMDSPIDCVLLECGHMVTCTKCGKRMNECPICRQYVIRAVHV
              310       320       330       340       350       360

          
pF1KB4 FRS
       :::
CCDS11 FRS
          

>>CCDS31915.1 RNF34 gene_id:80196|Hs108|chr12             (372 aa)
 initn: 939 init1: 432 opt: 981  Z-score: 793.8  bits: 155.5 E(32554): 6.8e-38
Smith-Waterman score: 981; 44.2% identity (69.1% similar) in 382 aa overlap (1-363:8-372)

                             10        20        30        40      
pF1KB4        MWATCCNWF-------CLDGQPEEVPPPQGARMQAYSNPGYSSFPSPTGLE-P
              :::.::. .        . ::        :  ..   :: .:..: :.. : :
CCDS31 MKAGATSMWASCCGLLNEVMGTGAVRGQQSAFAGATGP-FRFTPNPEFSTYP-PAATEGP
               10        20        30         40        50         

            50        60        70        80        90       100   
pF1KB4 S--CKSCGAHFANTARKQTCLDCKKNFCMTCSSQVGNGPRLCLLCQRFRATAFQREELMK
       .  ::.::  :.   .:..: ::::.:: .::  . .. : :  :. .. ::::: .::.
CCDS31 NIVCKACGLSFSVFRKKHVCCDCKKDFCSVCSV-LQENLRRCSTCHLLQETAFQRPQLMR
       60        70        80        90        100       110       

           110       120       130       140       150       160   
pF1KB4 MKVKDLRDYLSLHDISTEMCREKEELVLLVLGQQPVISQEDRTRASTLSPDFPEQQAFLT
       .::::::.:: :..:  . :::::.:: ::: .. . :..:   .:.:. .  . ..:.:
CCDS31 LKVKDLRQYLILRNIPIDTCREKEDLVDLVLCHHGLGSEDDMD-TSSLNSSRSQTSSFFT
       120       130       140       150       160        170      

           170       180                190       200       210    
pF1KB4 QPHSSMVPPTSPNLPSSSAQ---------ATSVPPAQVQENQQANGHVSQDQEEPVYLES
       .   :    :.:.   :: :         . :  ::::: .. ..... .:...    ..
CCDS31 RSFFSNY--TAPSATMSSFQGELMDGDQTSRSGVPAQVQ-SEITSANTEDDDDDDDEDDD
        180         190       200       210        220       230   

          220       230       240       250       260       270    
pF1KB4 VARVPAEDETQSIDSEDSFVPGRRASLSDLTDLEDIEGLTVRQLKEILARNFVNYKGCCE
         .  :::.. ....:       :::::::..:.:.::..:::::::::::::::.::::
CCDS31 DEEENAEDRNPGLSKERV-----RASLSDLSSLDDVEGMSVRQLKEILARNFVNYSGCCE
           240       250            260       270       280        

          280       290       300       310       320       330    
pF1KB4 KWELMERVTRLYKDQKGLQHLVSGAEDQNGGAVPSGLEENLCKICMDSPIDCVLLECGHM
       ::::.:.:.::::...  :.   : . :    . .  ...::.::::. :::::::::::
CCDS31 KWELVEKVNRLYKENEENQKSY-GERLQ----LQDEEDDSLCRICMDAVIDCVLLECGHM
      290       300       310            320       330       340   

          340       350       360   
pF1KB4 VTCTKCGKRMNECPICRQYVIRAVHVFRS
       ::::::::::.:::::::::.::::::.:
CCDS31 VTCTKCGKRMSECPICRQYVVRAVHVFKS
           350       360       370  

>>CCDS9221.1 RNF34 gene_id:80196|Hs108|chr12              (373 aa)
 initn: 939 init1: 432 opt: 981  Z-score: 793.8  bits: 155.5 E(32554): 6.8e-38
Smith-Waterman score: 981; 44.2% identity (69.1% similar) in 382 aa overlap (1-363:9-373)

                              10        20        30        40     
pF1KB4         MWATCCNWF-------CLDGQPEEVPPPQGARMQAYSNPGYSSFPSPTGLE-
               :::.::. .        . ::        :  ..   :: .:..: :.. : 
CCDS92 MRKAGATSMWASCCGLLNEVMGTGAVRGQQSAFAGATGP-FRFTPNPEFSTYP-PAATEG
               10        20        30         40        50         

             50        60        70        80        90       100  
pF1KB4 PS--CKSCGAHFANTARKQTCLDCKKNFCMTCSSQVGNGPRLCLLCQRFRATAFQREELM
       :.  ::.::  :.   .:..: ::::.:: .::  . .. : :  :. .. ::::: .::
CCDS92 PNIVCKACGLSFSVFRKKHVCCDCKKDFCSVCSV-LQENLRRCSTCHLLQETAFQRPQLM
       60        70        80        90        100       110       

            110       120       130       140       150       160  
pF1KB4 KMKVKDLRDYLSLHDISTEMCREKEELVLLVLGQQPVISQEDRTRASTLSPDFPEQQAFL
       ..::::::.:: :..:  . :::::.:: ::: .. . :..:   .:.:. .  . ..:.
CCDS92 RLKVKDLRQYLILRNIPIDTCREKEDLVDLVLCHHGLGSEDDMD-TSSLNSSRSQTSSFF
       120       130       140       150       160        170      

            170       180                190       200       210   
pF1KB4 TQPHSSMVPPTSPNLPSSSAQ---------ATSVPPAQVQENQQANGHVSQDQEEPVYLE
       :.   :    :.:.   :: :         . :  ::::: .. ..... .:...    .
CCDS92 TRSFFSNY--TAPSATMSSFQGELMDGDQTSRSGVPAQVQ-SEITSANTEDDDDDDDEDD
        180         190       200       210        220       230   

           220       230       240       250       260       270   
pF1KB4 SVARVPAEDETQSIDSEDSFVPGRRASLSDLTDLEDIEGLTVRQLKEILARNFVNYKGCC
       .  .  :::.. ....:       :::::::..:.:.::..:::::::::::::::.:::
CCDS92 DDEEENAEDRNPGLSKERV-----RASLSDLSSLDDVEGMSVRQLKEILARNFVNYSGCC
           240       250            260       270       280        

           280       290       300       310       320       330   
pF1KB4 EKWELMERVTRLYKDQKGLQHLVSGAEDQNGGAVPSGLEENLCKICMDSPIDCVLLECGH
       :::::.:.:.::::...  :.   : . :    . .  ...::.::::. ::::::::::
CCDS92 EKWELVEKVNRLYKENEENQKSY-GERLQ----LQDEEDDSLCRICMDAVIDCVLLECGH
      290       300       310            320       330       340   

           340       350       360   
pF1KB4 MVTCTKCGKRMNECPICRQYVIRAVHVFRS
       :::::::::::.:::::::::.::::::.:
CCDS92 MVTCTKCGKRMSECPICRQYVVRAVHVFKS
           350       360       370   

>>CCDS73538.1 RNF34 gene_id:80196|Hs108|chr12             (180 aa)
 initn: 636 init1: 339 opt: 607  Z-score: 500.7  bits: 100.2 E(32554): 1.4e-21
Smith-Waterman score: 621; 54.9% identity (80.6% similar) in 175 aa overlap (189-363:17-180)

      160       170       180       190       200       210        
pF1KB4 QAFLTQPHSSMVPPTSPNLPSSSAQATSVPPAQVQENQQANGHVSQDQEEPVYLESVARV
                                     ::::: .. ..... .:...    ..  . 
CCDS73               MKGELMDGDQTSRSGVPAQVQ-SEITSANTEDDDDDDDEDDDDEEE
                             10        20         30        40     

      220       230       240       250       260       270        
pF1KB4 PAEDETQSIDSEDSFVPGRRASLSDLTDLEDIEGLTVRQLKEILARNFVNYKGCCEKWEL
        :::.. ....:       :::::::..:.:.::..:::::::::::::::.::::::::
CCDS73 NAEDRNPGLSKERV-----RASLSDLSSLDDVEGMSVRQLKEILARNFVNYSGCCEKWEL
          50             60        70        80        90       100

      280       290       300       310       320       330        
pF1KB4 MERVTRLYKDQKGLQHLVSGAEDQNGGAVPSGLEENLCKICMDSPIDCVLLECGHMVTCT
       .:.:.::::...  :.   : . :    . .  ...::.::::. :::::::::::::::
CCDS73 VEKVNRLYKENEENQK-SYGERLQ----LQDEEDDSLCRICMDAVIDCVLLECGHMVTCT
              110        120           130       140       150     

      340       350       360   
pF1KB4 KCGKRMNECPICRQYVIRAVHVFRS
       ::::::.:::::::::.::::::.:
CCDS73 KCGKRMSECPICRQYVVRAVHVFKS
         160       170       180




363 residues in 1 query   sequences
18511270 residues in 32554 library sequences
 Tcomplib [36.3.4 Apr, 2011] (8 proc)
 start: Sat Nov  5 05:33:55 2016 done: Sat Nov  5 05:33:55 2016
 Total Scan time:  3.080 Total Display time: -0.010

Function used was FASTA [36.3.4 Apr, 2011]
Inquiries or Suggestions ?
Send a message to flexiclone AT kazusagt.com