FASTA searches a protein or DNA sequence data bank 36.3.4 Apr, 2011 Please cite: W.R. Pearson & D.J. Lipman PNAS (1988) 85:2444-2448 Query: pF1KE4303, 298 aa 1>>>pF1KE4303 298 - 298 aa - 298 aa Library: human.CCDS.faa 18511270 residues in 32554 sequences Statistics: Expectation_n fit: rho(ln(x))= 5.5244+/-0.00117; mu= 13.9106+/- 0.070 mean_var=58.9096+/-11.814, 0's: 0 Z-trim(100.1): 39 B-trim: 0 in 0/48 Lambda= 0.167102 statistics sampled from 5993 (6001) to 5993 sequences Algorithm: FASTA (3.7 Nov 2010) [optimized] Parameters: BL50 matrix (15:-5), open/ext: -10/-2 ktup: 2, E-join: 1 (0.543), E-opt: 0.2 (0.184), width: 16 Scan time: 2.180 The best scores are: opt bits E(32554) CCDS31142.1 ATP5C1 gene_id:509|Hs108|chr10 ( 298) 1853 455.5 2.2e-128 CCDS7081.1 ATP5C1 gene_id:509|Hs108|chr10 ( 297) 1845 453.6 8.4e-128 >>CCDS31142.1 ATP5C1 gene_id:509|Hs108|chr10 (298 aa) initn: 1853 init1: 1853 opt: 1853 Z-score: 2418.3 bits: 455.5 E(32554): 2.2e-128 Smith-Waterman score: 1853; 99.7% identity (100.0% similar) in 298 aa overlap (1-298:1-298) 10 20 30 40 50 60 pF1KE4 MFSRAGVAGLSAWTLQPQWIQVRNMATLKDITRRLKSIKNIQKIAKSMKMVAAAKYARAE ::::::::::::::::::::::::::::::::::::::::::::.::::::::::::::: CCDS31 MFSRAGVAGLSAWTLQPQWIQVRNMATLKDITRRLKSIKNIQKITKSMKMVAAAKYARAE 10 20 30 40 50 60 70 80 90 100 110 120 pF1KE4 RELKPARIYGLGSLALYEKADIKGPEDKKKHLLIGVSSDRGLCGAIHSSIAKQMKSEVAT :::::::::::::::::::::::::::::::::::::::::::::::::::::::::::: CCDS31 RELKPARIYGLGSLALYEKADIKGPEDKKKHLLIGVSSDRGLCGAIHSSIAKQMKSEVAT 70 80 90 100 110 120 130 140 150 160 170 180 pF1KE4 LTAAGKEVMLVGIGDKIRGILYRTHSDQFLVAFKEVGRKPPTFGDASVIALELLNSGYEF :::::::::::::::::::::::::::::::::::::::::::::::::::::::::::: CCDS31 LTAAGKEVMLVGIGDKIRGILYRTHSDQFLVAFKEVGRKPPTFGDASVIALELLNSGYEF 130 140 150 160 170 180 190 200 210 220 230 240 pF1KE4 DEGSIIFNKFRSVISYKTEEKPIFSLNTVASADSMSIYDDIDADVLQNYQEYNLANIIYY :::::::::::::::::::::::::::::::::::::::::::::::::::::::::::: CCDS31 DEGSIIFNKFRSVISYKTEEKPIFSLNTVASADSMSIYDDIDADVLQNYQEYNLANIIYY 190 200 210 220 230 240 250 260 270 280 290 pF1KE4 SLKESTTSEQSARMTAMDNASKNASEMIDKLTLTFNRTRQAVITKELIEIISGAAALD :::::::::::::::::::::::::::::::::::::::::::::::::::::::::: CCDS31 SLKESTTSEQSARMTAMDNASKNASEMIDKLTLTFNRTRQAVITKELIEIISGAAALD 250 260 270 280 290 >>CCDS7081.1 ATP5C1 gene_id:509|Hs108|chr10 (297 aa) initn: 1845 init1: 1845 opt: 1845 Z-score: 2407.9 bits: 453.6 E(32554): 8.4e-128 Smith-Waterman score: 1845; 99.7% identity (100.0% similar) in 297 aa overlap (1-297:1-297) 10 20 30 40 50 60 pF1KE4 MFSRAGVAGLSAWTLQPQWIQVRNMATLKDITRRLKSIKNIQKIAKSMKMVAAAKYARAE ::::::::::::::::::::::::::::::::::::::::::::.::::::::::::::: CCDS70 MFSRAGVAGLSAWTLQPQWIQVRNMATLKDITRRLKSIKNIQKITKSMKMVAAAKYARAE 10 20 30 40 50 60 70 80 90 100 110 120 pF1KE4 RELKPARIYGLGSLALYEKADIKGPEDKKKHLLIGVSSDRGLCGAIHSSIAKQMKSEVAT :::::::::::::::::::::::::::::::::::::::::::::::::::::::::::: CCDS70 RELKPARIYGLGSLALYEKADIKGPEDKKKHLLIGVSSDRGLCGAIHSSIAKQMKSEVAT 70 80 90 100 110 120 130 140 150 160 170 180 pF1KE4 LTAAGKEVMLVGIGDKIRGILYRTHSDQFLVAFKEVGRKPPTFGDASVIALELLNSGYEF :::::::::::::::::::::::::::::::::::::::::::::::::::::::::::: CCDS70 LTAAGKEVMLVGIGDKIRGILYRTHSDQFLVAFKEVGRKPPTFGDASVIALELLNSGYEF 130 140 150 160 170 180 190 200 210 220 230 240 pF1KE4 DEGSIIFNKFRSVISYKTEEKPIFSLNTVASADSMSIYDDIDADVLQNYQEYNLANIIYY :::::::::::::::::::::::::::::::::::::::::::::::::::::::::::: CCDS70 DEGSIIFNKFRSVISYKTEEKPIFSLNTVASADSMSIYDDIDADVLQNYQEYNLANIIYY 190 200 210 220 230 240 250 260 270 280 290 pF1KE4 SLKESTTSEQSARMTAMDNASKNASEMIDKLTLTFNRTRQAVITKELIEIISGAAALD ::::::::::::::::::::::::::::::::::::::::::::::::::::::::: CCDS70 SLKESTTSEQSARMTAMDNASKNASEMIDKLTLTFNRTRQAVITKELIEIISGAAAL 250 260 270 280 290 298 residues in 1 query sequences 18511270 residues in 32554 library sequences Tcomplib [36.3.4 Apr, 2011] (8 proc) start: Sat Nov 5 23:29:41 2016 done: Sat Nov 5 23:29:41 2016 Total Scan time: 2.180 Total Display time: -0.020 Function used was FASTA [36.3.4 Apr, 2011]