(Circular) (Six-base) MAPSORT of: pFN21AB3590.seq Check: 9344 from: 1 to: 5098 pFN21AB3590 5098 bp With 182 enzymes: SgfI * October 20, 2009 10:53 .. AatII G_ACGT'C Cuts at: 278 331 414 600 1536 2908 278 Size: 53 83 186 936 1372 2468 Fragments arranged by size: 2468 1372 936 186 83 53 AccI GT'mk_AC Cuts at: 1937 2441 1937 Size: 504 4594 Acc65I G'GTAC_C Cuts at: 2419 2419 Size: 5098 AclI AA'CG_TT Cuts at: 1563 3225 3598 1563 Size: 1662 373 3063 Fragments arranged by size: 3063 1662 373 AcuI CTGAAGnnnnnnnnnnnnnn_nn' Cuts at: 1632 2132 3161 4545 4813 1632 Size: 500 1029 1384 268 1917 Fragments arranged by size: 1917 1384 1029 500 268 AflII C'TTAA_G Cuts at: 820 1017 820 Size: 197 4901 AflIII A'CryG_T Cuts at: 1203 3997 4974 1203 Size: 2794 977 1327 Fragments arranged by size: 2794 1327 977 AgeI A'CCGG_T Cuts at: 3929 3929 Size: 5098 AhdI GACnn_n'nnGTC Cuts at: 3827 3827 Size: 5098 AleI CACnn'nnGTG Cuts at: 1166 1166 Size: 5098 AlfI GCAnnnnnnTGCnnnnnnnnnn_nn' Cuts at: 1184 1184 Size: 5098 AlwNI CAG_nnn'CTG Cuts at: 2280 2841 4413 2280 Size: 561 1572 2965 Fragments arranged by size: 2965 1572 561 ApaLI G'TGCA_C Cuts at: 3155 4311 3155 Size: 1156 3942 ApoI r'AATT_y Cuts at: 1493 2407 2633 2785 4894 1493 Size: 914 226 152 2109 1697 Fragments arranged by size: 2109 1697 914 226 152 AseI AT'TA_AT Cuts at: 160 1032 3652 160 Size: 872 2620 1606 Fragments arranged by size: 2620 1606 872 AsiSI GCG_AT'CGC Cuts at: 2001 2001 Size: 5098 AvaI C'yCGr_G Cuts at: 1870 1943 2423 1870 Size: 73 480 4545 Fragments arranged by size: 4545 480 73 BamHI G'GATC_C Cuts at: 2428 2795 2428 Size: 367 4731 BanI G'GyrC_C Cuts at: 618 943 1160 1787 2348 2419 3874 618 Size: 325 217 627 561 71 1455 1842 Fragments arranged by size: 1842 1455 627 561 325 217 71 BanII G_rGCy'C Cuts at: 1391 2417 1391 Size: 1026 4072 BbsI GAAGACnn'nnnn_ Cuts at: 928 1899 928 Size: 971 4127 BcgI CGAnnnnnnTGCnnnnnnnnnn_nn' Cuts at: 1903 1937 3289 3323 1903 Size: 34 1352 34 3678 Fragments arranged by size: 3678 1352 34 34 BciVI GTATCCnnnnn_n' Cuts at: 2990 4200 2990 Size: 1210 3888 BclI T'GATC_A Cuts at: 1548 1548 Size: 5098 BglI GCCn_nnn'nGGC Cuts at: 136 243 365 436 1067 1672 3709 136 Size: 107 122 71 631 605 2037 1525 Fragments arranged by size: 2037 1525 631 605 122 107 71 BglII A'GATC_T Cuts at: 2010 5093 2010 Size: 3083 2015 BlpI GC'TnA_GC Cuts at: 2363 2515 2363 Size: 152 4946 Bme1580I G_kGCm'C Cuts at: 1790 3159 4315 1790 Size: 1369 1156 2573 Fragments arranged by size: 2573 1369 1156 BmgBI CAC'GTC Cuts at: 1318 1318 Size: 5098 BmrI ACTGGGnnnn_n' Cuts at: 442 858 911 994 1393 1417 2829 3787 442 Size: 416 53 83 399 24 1412 958 1753 Fragments arranged by size: 1753 1412 958 416 399 83 53 24 BmtI G_CTAG'C Cuts at: 1056 1056 Size: 5098 BpmI CTGGAGnnnnnnnnnnnnnn_nn' Cuts at: 1239 3758 1239 Size: 2519 2579 Bpu10I CC'TnA_GC Cuts at: 2204 2204 Size: 5098 BpuEI CTTGAGnnnnnnnnnnnnnn_nn' Cuts at: 3223 4088 4386 3223 Size: 865 298 3935 Fragments arranged by size: 3935 865 298 BsaI GGTCTCn'nnnn_ Cuts at: 882 1499 3761 882 Size: 617 2262 2219 Fragments arranged by size: 2262 2219 617 BsaAI yAC'GTr Cuts at: 493 1204 2889 493 Size: 711 1685 2702 Fragments arranged by size: 2702 1685 711 BsaBI GATnn'nnATC Cuts at: 5092 5092 Size: 5098 BsaHI Gr'CG_yC Cuts at: 275 328 411 597 1533 2244 2905 3287 3922 Size: 53 83 186 936 711 661 382 635 Cuts at: 3922 275 Size: 1451 Fragments arranged by size: 1451 936 711 661 635 382 186 83 53 BsaWI w'CCGG_w Cuts at: 3531 3929 4203 4350 4761 3531 Size: 398 274 147 411 3868 Fragments arranged by size: 3868 411 398 274 147 BsaXI ACnnnnnCTCCnnnnnnn_nnn' Cuts at: 1178 1208 1373 1403 1178 Size: 30 165 30 4873 Fragments arranged by size: 4873 165 30 30 BseRI GAGGAGnnnnnnnn_nn' Cuts at: 1186 1186 Size: 5098 BseYI C'CCAG_C Cuts at: 2344 4301 4797 2344 Size: 1957 496 2645 Fragments arranged by size: 2645 1957 496 BsgI GTGCAGnnnnnnnnnnnnnn_nn' Cuts at: 1163 1736 1163 Size: 573 4525 BsiEI CG_ry'CG Cuts at: 1540 1815 2001 2313 2548 3309 4337 1540 Size: 275 186 312 235 761 1028 2301 Fragments arranged by size: 2301 1028 761 312 275 235 186 BsiHKAI G_wGCw'C Cuts at: 3159 3244 4315 3159 Size: 85 1071 3942 Fragments arranged by size: 3942 1071 85 BsmI GAATG_Cn' Cuts at: 2609 2702 2609 Size: 93 5005 Bsp1286I G_dGCh'C Cuts at: 1391 1790 2417 3159 3244 4315 1391 Size: 399 627 742 85 1071 2174 Fragments arranged by size: 2174 1071 742 627 399 85 BspEI T'CCGG_A Cuts at: 4761 4761 Size: 5098 BspHI T'CATG_A Cuts at: 2987 4717 2987 Size: 1730 3368 BspMI ACCTGCnnnn'nnnn_ Cuts at: 844 2453 844 Size: 1609 3489 BsrBI CCG'CTC Cuts at: 1394 1823 2985 1394 Size: 429 1162 3507 Fragments arranged by size: 3507 1162 429 BsrDI GCAATG_nn' Cuts at: 65 1248 3593 3767 65 Size: 1183 2345 174 1396 Fragments arranged by size: 2345 1396 1183 174 BsrFI r'CCGG_y Cuts at: 1700 1810 2168 2374 3742 3929 1700 Size: 110 358 206 1368 187 2869 Fragments arranged by size: 2869 1368 358 206 187 110 BsrGI T'GTAC_A Cuts at: 96 96 Size: 5098 BssHII G'CGCG_C Cuts at: 1925 1925 Size: 5098 BssSI C'ACGA_G Cuts at: 2183 3158 4170 2183 Size: 975 1012 3111 Fragments arranged by size: 3111 1012 975 BstAPI GCAn_nnn'nTGC Cuts at: 794 2277 794 Size: 1483 3615 BstBI TT'CG_AA Cuts at: 3902 3902 Size: 5098 BstEII G'GTnAC_C Cuts at: 1184 1184 Size: 5098 BstYI r'GATC_y Cuts at: 1972 2010 2428 2795 3180 3197 4649 4735 4747 Size: 38 418 367 385 17 1452 86 12 Cuts at: 4747 5093 1972 Size: 346 1977 Fragments arranged by size: 1977 1452 418 385 367 346 86 38 17 12 BtgI C'CryG_G Cuts at: 513 1065 2265 513 Size: 552 1200 3346 Fragments arranged by size: 3346 1200 552 BtgZI GCGATGnnnnnnnnnn'nnnn_ Cuts at: 487 1170 1226 487 Size: 683 56 4359 Fragments arranged by size: 4359 683 56 BtsI GCAGTG_nn' Cuts at: 2614 3408 3428 2614 Size: 794 20 4284 Fragments arranged by size: 4284 794 20 ClaI AT'CG_AT Cuts at: 1554 1554 Size: 5098 CspCI CAAnnnnnGTGGnnnnnnnnnn_nn' Cuts at: 529 564 529 Size: 35 5063 DraI TTT'AAA Cuts at: 2402 2402 Size: 5098 DrdI GACnn_nn'nnGTC Cuts at: 809 1316 4105 809 Size: 507 2789 1802 Fragments arranged by size: 2789 1802 507 EaeI y'GGCC_r Cuts at: 8 62 1487 1537 1812 1830 2194 2310 2545 Size: 54 1425 50 275 18 364 116 235 Cuts at: 2545 3434 5063 8 Size: 889 1629 43 Fragments arranged by size: 1629 1425 889 364 275 235 116 54 50 43 18 EagI C'GGCC_G Cuts at: 1537 1812 2310 2545 1537 Size: 275 498 235 4090 Fragments arranged by size: 4090 498 275 235 EarI CTCTTCn'nnn_ Cuts at: 1353 2087 3028 1353 Size: 734 941 3423 Fragments arranged by size: 3423 941 734 EciI GGCGGAnnnnnnnnn_nn' Cuts at: 387 1451 1589 3685 4059 4205 387 Size: 1064 138 2096 374 146 1280 Fragments arranged by size: 2096 1280 1064 374 146 138 Eco57MI CTGrAGnnnnnnnnnnnnnn_nn' Cuts at: 1239 1632 2132 3161 3758 4545 4813 1239 Size: 393 500 1029 597 787 268 1524 Fragments arranged by size: 1524 1029 787 597 500 393 268 EcoRI G'AATT_C Cuts at: 2407 2785 2407 Size: 378 4720 FalI AAGnnnnnCTTnnnnnnnn_nnnnn' Cuts at: 2032 2032 Size: 5098 FspI TGC'GCA Cuts at: 3604 3604 Size: 5098 HaeII r_GCGC'y Cuts at: 1678 4245 1678 Size: 2567 2531 Hin4I GAynnnnnvTCnnnnnnnn_nnnnn' Cuts at: 1373 1405 1540 1572 3739 3771 3813 3845 1373 Size: 32 135 32 2167 32 42 32 2626 Fragments arranged by size: 2626 2167 135 42 32 32 32 32 HincII GTy'rAC Cuts at: 669 1657 1938 2442 2688 669 Size: 988 281 504 246 3079 Fragments arranged by size: 3079 988 504 281 246 HindIII A'AGCT_T Cuts at: 748 748 Size: 5098 HpaI GTT'AAC Cuts at: 2688 2688 Size: 5098 KpnI G_GTAC'C Cuts at: 2423 2423 Size: 5098 MfeI C'AATT_G Cuts at: 2697 2697 Size: 5098 MluI A'CGCG_T Cuts at: 4974 4974 Size: 5098 MmeI TCCrACnnnnnnnnnnnnnnnnnn_nn' Cuts at: 1305 2154 4212 4396 1305 Size: 849 2058 184 2007 Fragments arranged by size: 2058 2007 849 184 MscI TGG'CCA Cuts at: 10 64 1489 1832 2196 10 Size: 54 1425 343 364 2912 Fragments arranged by size: 2912 1425 364 343 54 MslI CAynn'nnrTG Cuts at: 518 1166 3056 3415 3574 518 Size: 648 1890 359 159 2042 Fragments arranged by size: 2042 1890 648 359 159 MspA1I CmG'CkG Cuts at: 1606 2277 2514 3191 4339 4584 1606 Size: 671 237 677 1148 245 2120 Fragments arranged by size: 2120 1148 677 671 245 237 NaeI GCC'GGC Cuts at: 2170 2376 2170 Size: 206 4892 NcoI C'CATG_G Cuts at: 513 1065 2265 513 Size: 552 1200 3346 Fragments arranged by size: 3346 1200 552 NdeI CA'TA_TG Cuts at: 387 387 Size: 5098 NgoMIV G'CCGG_C Cuts at: 2168 2374 2168 Size: 206 4892 NheI G'CTAG_C Cuts at: 1052 1052 Size: 5098 NotI GC'GGCC_GC Cuts at: 2545 2545 Size: 5098 NspI r_CATG'y Cuts at: 1132 1229 2456 4001 1132 Size: 97 1227 1545 2229 Fragments arranged by size: 2229 1545 1227 97 PasI CC'CwG_GG Cuts at: 1348 1348 Size: 5098 PciI A'CATG_T Cuts at: 3997 3997 Size: 5098 PflMI CCAn_nnn'nTGG Cuts at: 1108 1108 Size: 5098 PmeI GTTT'AAAC Cuts at: 2402 2402 Size: 5098 PpiI GAACnnnnnCTCnnnnnnnn_nnnnn' Cuts at: 3167 3199 4680 4712 3167 Size: 32 1481 32 3553 Fragments arranged by size: 3553 1481 32 32 PshAI GACnn'nnGTC Cuts at: 1613 1613 Size: 5098 PsiI TTA'TAA Cuts at: 2668 2668 Size: 5098 PstI C_TGCA'G Cuts at: 830 2450 830 Size: 1620 3478 PvuI CG_AT'CG Cuts at: 2001 2001 Size: 5098 PvuII CAG'CTG Cuts at: 2277 2277 Size: 5098 SalI G'TCGA_C Cuts at: 1936 2440 1936 Size: 504 4594 SapI GCTCTTCn'nnn_ Cuts at: 2087 2087 Size: 5098 SbfI CC_TGCA'GG Cuts at: 2450 2450 Size: 5098 ScaI AGT'ACT Cuts at: 3346 5058 3346 Size: 1712 3386 SfcI C'TryA_G Cuts at: 826 1045 2446 3581 4262 4453 826 Size: 219 1401 1135 681 191 1471 Fragments arranged by size: 1471 1401 1135 681 219 191 SgfI GCG_AT'CGC Cuts at: 2001 2001 Size: 5098 SgrAI Cr'CCGG_yG Cuts at: 1700 1700 Size: 5098 SmaI CCC'GGG Cuts at: 1872 2425 1872 Size: 553 4545 SmlI C'TyrA_G Cuts at: 820 1017 1943 3202 4103 4365 820 Size: 197 926 1259 901 262 1553 Fragments arranged by size: 1553 1259 926 901 262 197 SnaBI TAC'GTA Cuts at: 493 2889 493 Size: 2396 2702 SpeI A'CTAG_T Cuts at: 152 152 Size: 5098 SphI G_CATG'C Cuts at: 1132 2456 1132 Size: 1324 3774 SspI AAT'ATT Cuts at: 5 52 3022 5 Size: 47 2970 2081 Fragments arranged by size: 2970 2081 47 StuI AGG'CCT Cuts at: 1517 1517 Size: 5098 StyI C'CwwG_G Cuts at: 513 1065 2265 2537 513 Size: 552 1200 272 3074 Fragments arranged by size: 3074 1200 552 272 TaqII GACCGAnnnnnnnnn_nn' Cuts at: 325 1580 2033 2336 3125 3142 3295 3480 3925 Size: 1255 453 303 789 17 153 185 445 Cuts at: 3925 325 Size: 1498 Fragments arranged by size: 1498 1255 789 453 445 303 185 153 17 TatI w'GTAC_w Cuts at: 96 370 450 483 534 1977 2103 3344 5056 Size: 274 80 33 51 1443 126 1241 1712 Cuts at: 5056 96 Size: 138 Fragments arranged by size: 1712 1443 1241 274 138 126 80 51 33 TstI CACnnnnnnTCCnnnnnnn_nnnnn' Cuts at: 5058 5090 5058 Size: 32 5066 Tth111I GACn'n_nGTC Cuts at: 1316 2155 1316 Size: 839 4259 XbaI T'CTAG_A Cuts at: 2434 2434 Size: 5098 XhoI C'TCGA_G Cuts at: 1943 1943 Size: 5098 XmaI C'CCGG_G Cuts at: 1870 2423 1870 Size: 553 4545 XmnI GAAnn'nnTTC Cuts at: 2012 3227 2012 Size: 1215 3883 ZraI GAC'GTC Cuts at: 276 329 412 598 1534 2906 276 Size: 53 83 186 936 1372 2468 Fragments arranged by size: 2468 1372 936 186 83 53 Enzymes that do cut: AatII AccI Acc65I AclI AcuI AflII AflIII AgeI AhdI AleI AlfI AlwNI ApaLI ApoI AseI AsiSI AvaI BamHI BanI BanII BbsI BcgI BciVI BclI BglI BglII BlpI Bme1580I BmgBI BmrI BmtI BpmI Bpu10I BpuEI BsaI BsaAI BsaBI BsaHI BsaWI BsaXI BseRI BseYI BsgI BsiEI BsiHKAI BsmI Bsp1286I BspEI BspHI BspMI BsrBI BsrDI BsrFI BsrGI BssHII BssSI BstAPI BstBI BstEII BstYI BtgI BtgZI BtsI ClaI CspCI DraI DrdI EaeI EagI EarI EciI Eco57MI EcoRI FalI FspI HaeII Hin4I HincII HindIII HpaI KpnI MfeI MluI MmeI MscI MslI MspA1I NaeI NcoI NdeI NgoMIV NheI NotI NspI PasI PciI PflMI PmeI PpiI PshAI PsiI PstI PvuI PvuII SalI SapI SbfI ScaI SfcI SgfI SgrAI SmaI SmlI SnaBI SpeI SphI SspI StuI StyI TaqII TatI TstI Tth111I XbaI XhoI XmaI XmnI ZraI Enzymes that do not cut: AarI AfeI AloI ApaI AscI AvrII BaeI BbeI BbvCI BfrBI BplI BsiWI BsmBI BstXI BstZ17I Bsu36I DraIII EcoICRI EcoNI EcoO109I EcoRV FseI FspAI KasI NarI NruI NsiI PacI PfoI PmlI PpuMI PspOMI PspXI PsrI RsrII SacI SacII SanDI SexAI SfiI SfoI SrfI SwaI XcmI