Result of FASTA (omim) for
pFN21AE0751
FASTA searches a protein or DNA sequence data bank 36.3.4 Apr, 2011
Please cite:
W.R. Pearson & D.J. Lipman PNAS (1988) 85:2444-2448
Query: pF1KE0751, 328 aa
1>>>pF1KE0751 328 - 328 aa - 328 aa
Library: /omim/omim.rfq.tfa
60827320 residues in 85289 sequences
Statistics: Expectation_n fit: rho(ln(x))= 7.3245+/-0.000434; mu= 10.2858+/- 0.027
mean_var=297.3140+/-65.094, 0's: 0 Z-trim(119.8): 262 B-trim: 2077 in 1/56
Lambda= 0.074382
statistics sampled from 33973 (34257) to 33973 sequences
Algorithm: FASTA (3.7 Nov 2010) [optimized]
Parameters: BL50 matrix (15:-5), open/ext: -10/-2
ktup: 2, E-join: 1 (0.745), E-opt: 0.2 (0.402), width: 16
Scan time: 7.950
The best scores are: opt bits E(85289)
NP_620412 (OMIM: 607897) RNA-binding protein Musas ( 328) 2266 256.4 6.1e-68
XP_005257072 (OMIM: 607897) PREDICTED: RNA-binding ( 346) 1845 211.2 2.5e-54
XP_005257071 (OMIM: 607897) PREDICTED: RNA-binding ( 346) 1845 211.2 2.5e-54
XP_016879637 (OMIM: 607897) PREDICTED: RNA-binding ( 295) 1819 208.3 1.6e-53
XP_011536665 (OMIM: 603328) PREDICTED: RNA-binding ( 332) 1707 196.4 7e-50
NP_001309179 (OMIM: 607897) RNA-binding protein Mu ( 324) 1695 195.1 1.7e-49
NP_001309180 (OMIM: 607897) RNA-binding protein Mu ( 255) 1677 193.0 5.7e-49
NP_733839 (OMIM: 607897) RNA-binding protein Musas ( 251) 1533 177.5 2.5e-44
XP_011536664 (OMIM: 603328) PREDICTED: RNA-binding ( 343) 1419 165.5 1.4e-40
XP_006719466 (OMIM: 603328) PREDICTED: RNA-binding ( 351) 1332 156.2 9.4e-38
NP_002433 (OMIM: 603328) RNA-binding protein Musas ( 362) 1319 154.8 2.5e-37
XP_011536663 (OMIM: 603328) PREDICTED: RNA-binding ( 362) 1319 154.8 2.5e-37
XP_016879638 (OMIM: 607897) PREDICTED: RNA-binding ( 259) 1131 134.4 2.5e-31
XP_011522588 (OMIM: 607897) PREDICTED: RNA-binding ( 242) 1124 133.6 4e-31
XP_016879636 (OMIM: 607897) PREDICTED: RNA-binding ( 315) 935 113.5 5.9e-25
XP_011522589 (OMIM: 607897) PREDICTED: RNA-binding ( 230) 931 112.9 6.7e-25
XP_011536666 (OMIM: 603328) PREDICTED: RNA-binding ( 262) 807 99.7 7.3e-21
XP_011536668 (OMIM: 603328) PREDICTED: RNA-binding ( 259) 805 99.4 8.4e-21
XP_011536667 (OMIM: 603328) PREDICTED: RNA-binding ( 259) 805 99.4 8.4e-21
NP_112556 (OMIM: 602688) heterogeneous nuclear rib ( 332) 669 85.0 2.4e-16
NP_004490 (OMIM: 602688) heterogeneous nuclear rib ( 285) 633 81.0 3.2e-15
NP_112740 (OMIM: 607137,609115) heterogeneous nucl ( 420) 623 80.2 8.3e-15
XP_011536673 (OMIM: 603328) PREDICTED: RNA-binding ( 224) 600 77.3 3.3e-14
XP_011536670 (OMIM: 603328) PREDICTED: RNA-binding ( 224) 600 77.3 3.3e-14
XP_006719467 (OMIM: 603328) PREDICTED: RNA-binding ( 224) 600 77.3 3.3e-14
XP_011536672 (OMIM: 603328) PREDICTED: RNA-binding ( 224) 600 77.3 3.3e-14
NP_001317176 (OMIM: 605372) heterogeneous nuclear ( 356) 600 77.6 4.2e-14
NP_001317177 (OMIM: 605372) heterogeneous nuclear ( 356) 600 77.6 4.2e-14
NP_919223 (OMIM: 605372) heterogeneous nuclear rib ( 378) 600 77.7 4.3e-14
NP_001317178 (OMIM: 605372) heterogeneous nuclear ( 378) 600 77.7 4.3e-14
NP_112737 (OMIM: 601324) heterogeneous nuclear rib ( 336) 598 77.4 4.7e-14
NP_001193929 (OMIM: 607137,609115) heterogeneous n ( 363) 595 77.1 6.2e-14
XP_016867598 (OMIM: 600124,615422) PREDICTED: hete ( 341) 591 76.7 8e-14
XP_016867599 (OMIM: 600124,615422) PREDICTED: hete ( 341) 591 76.7 8e-14
NP_002128 (OMIM: 600124,615422) heterogeneous nucl ( 341) 591 76.7 8e-14
NP_112533 (OMIM: 600124,615422) heterogeneous nucl ( 353) 591 76.7 8.2e-14
XP_005249786 (OMIM: 600124,615422) PREDICTED: hete ( 353) 591 76.7 8.2e-14
NP_001317179 (OMIM: 605372) heterogeneous nuclear ( 331) 587 76.2 1.1e-13
NP_001317180 (OMIM: 605372) heterogeneous nuclear ( 331) 587 76.2 1.1e-13
XP_005268883 (OMIM: 164017,615424,615426) PREDICTE ( 372) 583 75.9 1.5e-13
NP_112420 (OMIM: 164017,615424,615426) heterogeneo ( 372) 583 75.9 1.5e-13
NP_001003810 (OMIM: 601324) heterogeneous nuclear ( 287) 576 74.9 2.2e-13
NP_112738 (OMIM: 601324) heterogeneous nuclear rib ( 355) 574 74.9 2.9e-13
NP_002127 (OMIM: 164017,615424,615426) heterogeneo ( 320) 562 73.5 6.7e-13
XP_016874740 (OMIM: 164017,615424,615426) PREDICTE ( 295) 555 72.7 1.1e-12
NP_002129 (OMIM: 601324) heterogeneous nuclear rib ( 306) 552 72.4 1.4e-12
NP_006796 (OMIM: 609409) heterogeneous nuclear rib ( 305) 531 70.1 6.6e-12
XP_005259588 (OMIM: 607430) PREDICTED: DAZ-associa ( 406) 365 52.5 1.8e-06
XP_011526209 (OMIM: 607430) PREDICTED: DAZ-associa ( 548) 358 52.0 3.5e-06
XP_011526208 (OMIM: 607430) PREDICTED: DAZ-associa ( 549) 358 52.0 3.5e-06
>>NP_620412 (OMIM: 607897) RNA-binding protein Musashi h (328 aa)
initn: 2266 init1: 2266 opt: 2266 Z-score: 1340.7 bits: 256.4 E(85289): 6.1e-68
Smith-Waterman score: 2266; 100.0% identity (100.0% similar) in 328 aa overlap (1-328:1-328)
10 20 30 40 50 60
pF1KE0 MEANGSQGTSGSANDSQHDPGKMFIGGLSWQTSPDSLRDYFSKFGEIRECMVMRDPTTKR
::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
NP_620 MEANGSQGTSGSANDSQHDPGKMFIGGLSWQTSPDSLRDYFSKFGEIRECMVMRDPTTKR
10 20 30 40 50 60
70 80 90 100 110 120
pF1KE0 SRGFGFVTFADPASVDKVLGQPHHELDSKTIDPKVAFPRRAQPKMVTRTKKIFVGGLSAN
::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
NP_620 SRGFGFVTFADPASVDKVLGQPHHELDSKTIDPKVAFPRRAQPKMVTRTKKIFVGGLSAN
70 80 90 100 110 120
130 140 150 160 170 180
pF1KE0 TVVEDVKQYFEQFGKVEDAMLMFDKTTNRHRGFGFVTFENEDVVEKVCEIHFHEINNKMV
::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
NP_620 TVVEDVKQYFEQFGKVEDAMLMFDKTTNRHRGFGFVTFENEDVVEKVCEIHFHEINNKMV
130 140 150 160 170 180
190 200 210 220 230 240
pF1KE0 ECKKAQPKEVMFPPGTRGRARGLPYTMDAFMLGMGMLGYPNFVATYGRGYPGFAPSYGYQ
::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
NP_620 ECKKAQPKEVMFPPGTRGRARGLPYTMDAFMLGMGMLGYPNFVATYGRGYPGFAPSYGYQ
190 200 210 220 230 240
250 260 270 280 290 300
pF1KE0 FPGFPAAAYGPVAAAAVAAARGSGSNPARPGGFPGANSPGPVADLYGPASQDSGVGNYIS
::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
NP_620 FPGFPAAAYGPVAAAAVAAARGSGSNPARPGGFPGANSPGPVADLYGPASQDSGVGNYIS
250 260 270 280 290 300
310 320
pF1KE0 AASPQPGSGFGHGIAGPLIATAFTNGYH
::::::::::::::::::::::::::::
NP_620 AASPQPGSGFGHGIAGPLIATAFTNGYH
310 320
>>XP_005257072 (OMIM: 607897) PREDICTED: RNA-binding pro (346 aa)
initn: 1884 init1: 1806 opt: 1845 Z-score: 1096.3 bits: 211.2 E(85289): 2.5e-54
Smith-Waterman score: 2131; 94.6% identity (94.6% similar) in 333 aa overlap (1-315:1-333)
10 20 30 40 50 60
pF1KE0 MEANGSQGTSGSANDSQHDPGKMFIGGLSWQTSPDSLRDYFSKFGEIRECMVMRDPTTKR
::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
XP_005 MEANGSQGTSGSANDSQHDPGKMFIGGLSWQTSPDSLRDYFSKFGEIRECMVMRDPTTKR
10 20 30 40 50 60
70 80 90 100 110 120
pF1KE0 SRGFGFVTFADPASVDKVLGQPHHELDSKTIDPKVAFPRRAQPKMVTRTKKIFVGGLSAN
::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
XP_005 SRGFGFVTFADPASVDKVLGQPHHELDSKTIDPKVAFPRRAQPKMVTRTKKIFVGGLSAN
70 80 90 100 110 120
130 140 150 160 170 180
pF1KE0 TVVEDVKQYFEQFGKVEDAMLMFDKTTNRHRGFGFVTFENEDVVEKVCEIHFHEINNKMV
::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
XP_005 TVVEDVKQYFEQFGKVEDAMLMFDKTTNRHRGFGFVTFENEDVVEKVCEIHFHEINNKMV
130 140 150 160 170 180
190 200 210 220 230 240
pF1KE0 ECKKAQPKEVMFPPGTRGRARGLPYTMDAFMLGMGMLGYPNFVATYGRGYPGFAPSYGYQ
::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
XP_005 ECKKAQPKEVMFPPGTRGRARGLPYTMDAFMLGMGMLGYPNFVATYGRGYPGFAPSYGYQ
190 200 210 220 230 240
250 260 270 280
pF1KE0 FPGFPAAAYGPVAAAAVAAARGS------------------GSNPARPGGFPGANSPGPV
::::::::::::::::::::::: :::::::::::::::::::
XP_005 FPGFPAAAYGPVAAAAVAAARGSVLNSYSAQPNFGAPASPAGSNPARPGGFPGANSPGPV
250 260 270 280 290 300
290 300 310 320
pF1KE0 ADLYGPASQDSGVGNYISAASPQPGSGFGHGIAGPLIATAFTNGYH
:::::::::::::::::::::::::::::::::
XP_005 ADLYGPASQDSGVGNYISAASPQPGSGFGHGIASIPGCPGKTGRSF
310 320 330 340
>>XP_005257071 (OMIM: 607897) PREDICTED: RNA-binding pro (346 aa)
initn: 1884 init1: 1806 opt: 1845 Z-score: 1096.3 bits: 211.2 E(85289): 2.5e-54
Smith-Waterman score: 2220; 94.8% identity (94.8% similar) in 346 aa overlap (1-328:1-346)
10 20 30 40 50 60
pF1KE0 MEANGSQGTSGSANDSQHDPGKMFIGGLSWQTSPDSLRDYFSKFGEIRECMVMRDPTTKR
::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
XP_005 MEANGSQGTSGSANDSQHDPGKMFIGGLSWQTSPDSLRDYFSKFGEIRECMVMRDPTTKR
10 20 30 40 50 60
70 80 90 100 110 120
pF1KE0 SRGFGFVTFADPASVDKVLGQPHHELDSKTIDPKVAFPRRAQPKMVTRTKKIFVGGLSAN
::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
XP_005 SRGFGFVTFADPASVDKVLGQPHHELDSKTIDPKVAFPRRAQPKMVTRTKKIFVGGLSAN
70 80 90 100 110 120
130 140 150 160 170 180
pF1KE0 TVVEDVKQYFEQFGKVEDAMLMFDKTTNRHRGFGFVTFENEDVVEKVCEIHFHEINNKMV
::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
XP_005 TVVEDVKQYFEQFGKVEDAMLMFDKTTNRHRGFGFVTFENEDVVEKVCEIHFHEINNKMV
130 140 150 160 170 180
190 200 210 220 230 240
pF1KE0 ECKKAQPKEVMFPPGTRGRARGLPYTMDAFMLGMGMLGYPNFVATYGRGYPGFAPSYGYQ
::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
XP_005 ECKKAQPKEVMFPPGTRGRARGLPYTMDAFMLGMGMLGYPNFVATYGRGYPGFAPSYGYQ
190 200 210 220 230 240
250 260 270 280
pF1KE0 FPGFPAAAYGPVAAAAVAAARGS------------------GSNPARPGGFPGANSPGPV
::::::::::::::::::::::: :::::::::::::::::::
XP_005 FPGFPAAAYGPVAAAAVAAARGSVLNSYSAQPNFGAPASPAGSNPARPGGFPGANSPGPV
250 260 270 280 290 300
290 300 310 320
pF1KE0 ADLYGPASQDSGVGNYISAASPQPGSGFGHGIAGPLIATAFTNGYH
::::::::::::::::::::::::::::::::::::::::::::::
XP_005 ADLYGPASQDSGVGNYISAASPQPGSGFGHGIAGPLIATAFTNGYH
310 320 330 340
>>XP_016879637 (OMIM: 607897) PREDICTED: RNA-binding pro (295 aa)
initn: 1819 init1: 1819 opt: 1819 Z-score: 1081.9 bits: 208.3 E(85289): 1.6e-53
Smith-Waterman score: 1819; 100.0% identity (100.0% similar) in 265 aa overlap (1-265:1-265)
10 20 30 40 50 60
pF1KE0 MEANGSQGTSGSANDSQHDPGKMFIGGLSWQTSPDSLRDYFSKFGEIRECMVMRDPTTKR
::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
XP_016 MEANGSQGTSGSANDSQHDPGKMFIGGLSWQTSPDSLRDYFSKFGEIRECMVMRDPTTKR
10 20 30 40 50 60
70 80 90 100 110 120
pF1KE0 SRGFGFVTFADPASVDKVLGQPHHELDSKTIDPKVAFPRRAQPKMVTRTKKIFVGGLSAN
::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
XP_016 SRGFGFVTFADPASVDKVLGQPHHELDSKTIDPKVAFPRRAQPKMVTRTKKIFVGGLSAN
70 80 90 100 110 120
130 140 150 160 170 180
pF1KE0 TVVEDVKQYFEQFGKVEDAMLMFDKTTNRHRGFGFVTFENEDVVEKVCEIHFHEINNKMV
::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
XP_016 TVVEDVKQYFEQFGKVEDAMLMFDKTTNRHRGFGFVTFENEDVVEKVCEIHFHEINNKMV
130 140 150 160 170 180
190 200 210 220 230 240
pF1KE0 ECKKAQPKEVMFPPGTRGRARGLPYTMDAFMLGMGMLGYPNFVATYGRGYPGFAPSYGYQ
::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
XP_016 ECKKAQPKEVMFPPGTRGRARGLPYTMDAFMLGMGMLGYPNFVATYGRGYPGFAPSYGYQ
190 200 210 220 230 240
250 260 270 280 290 300
pF1KE0 FPGFPAAAYGPVAAAAVAAARGSGSNPARPGGFPGANSPGPVADLYGPASQDSGVGNYIS
:::::::::::::::::::::::::
XP_016 FPGFPAAAYGPVAAAAVAAARGSGSAHLLSNTLLSTLSGKVCPHLLILSQCPASC
250 260 270 280 290
>>XP_011536665 (OMIM: 603328) PREDICTED: RNA-binding pro (332 aa)
initn: 1588 init1: 1080 opt: 1707 Z-score: 1016.5 bits: 196.4 E(85289): 7e-50
Smith-Waterman score: 1707; 76.0% identity (91.0% similar) in 333 aa overlap (1-328:1-332)
10 20 30 40 50 60
pF1KE0 MEANGSQGTSGSANDSQHDPGKMFIGGLSWQTSPDSLRDYFSKFGEIRECMVMRDPTTKR
::... : .: :: ::: :::::::::::. ..::.::..:::..::.::::: :::
XP_011 METDAPQPGLASP-DSPHDPCKMFIGGLSWQTTQEGLREYFGQFGEVKECLVMRDPLTKR
10 20 30 40 50
70 80 90 100 110 120
pF1KE0 SRGFGFVTFADPASVDKVLGQPHHELDSKTIDPKVAFPRRAQPKMVTRTKKIFVGGLSAN
::::::::: : :.:::::.: .:::::::::::::::::::::::::::::::::::.:
XP_011 SRGFGFVTFMDQAGVDKVLAQSRHELDSKTIDPKVAFPRRAQPKMVTRTKKIFVGGLSVN
60 70 80 90 100 110
130 140 150 160 170 180
pF1KE0 TVVEDVKQYFEQFGKVEDAMLMFDKTTNRHRGFGFVTFENEDVVEKVCEIHFHEINNKMV
:.::::::::::::::.::::::::::::::::::::::.::.:::::::::::::::::
XP_011 TTVEDVKQYFEQFGKVDDAMLMFDKTTNRHRGFGFVTFESEDIVEKVCEIHFHEINNKMV
120 130 140 150 160 170
190 200 210 220 230
pF1KE0 ECKKAQPKEVMFPPGT-RGRARGLPYTMDAFMLGMGMLGYPNFVAT-YG-RGYPGFAPSY
::::::::::: : :. :::.: .:: :::::::.::::::.: :: :. :.: :.::.:
XP_011 ECKKAQPKEVMSPTGSARGRSRVMPYGMDAFMLGIGMLGYPGFQATTYASRSYTGLAPGY
180 190 200 210 220 230
240 250 260 270 280 290
pF1KE0 GYQFPGFPAAAYGPVAAAAVAAA--RGSGSNPARPGGFPGANSPGPVADLYGPASQDSGV
::::..: .::::.::::.::: ::.::.:.: ::: :..::::.:.::: :.:::::
XP_011 TYQFPAIPLTAYGPMAAAAAAAAVVRGTGSTPSRTGGFLGTTSPGPMAELYGAANQDSGV
240 250 260 270 280 290
300 310 320
pF1KE0 GNYISAASPQPGSGFGHGIAGPLIATAFTNGYH
..::::::: :..::::...:::::::::::::
XP_011 SSYISAASPAPSTGFGHSLGGPLIATAFTNGYH
300 310 320 330
>>NP_001309179 (OMIM: 607897) RNA-binding protein Musash (324 aa)
initn: 1734 init1: 1656 opt: 1695 Z-score: 1009.6 bits: 195.1 E(85289): 1.7e-49
Smith-Waterman score: 2070; 94.4% identity (94.4% similar) in 324 aa overlap (23-328:1-324)
10 20 30 40 50 60
pF1KE0 MEANGSQGTSGSANDSQHDPGKMFIGGLSWQTSPDSLRDYFSKFGEIRECMVMRDPTTKR
::::::::::::::::::::::::::::::::::::::
NP_001 MFIGGLSWQTSPDSLRDYFSKFGEIRECMVMRDPTTKR
10 20 30
70 80 90 100 110 120
pF1KE0 SRGFGFVTFADPASVDKVLGQPHHELDSKTIDPKVAFPRRAQPKMVTRTKKIFVGGLSAN
::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
NP_001 SRGFGFVTFADPASVDKVLGQPHHELDSKTIDPKVAFPRRAQPKMVTRTKKIFVGGLSAN
40 50 60 70 80 90
130 140 150 160 170 180
pF1KE0 TVVEDVKQYFEQFGKVEDAMLMFDKTTNRHRGFGFVTFENEDVVEKVCEIHFHEINNKMV
::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
NP_001 TVVEDVKQYFEQFGKVEDAMLMFDKTTNRHRGFGFVTFENEDVVEKVCEIHFHEINNKMV
100 110 120 130 140 150
190 200 210 220 230 240
pF1KE0 ECKKAQPKEVMFPPGTRGRARGLPYTMDAFMLGMGMLGYPNFVATYGRGYPGFAPSYGYQ
::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
NP_001 ECKKAQPKEVMFPPGTRGRARGLPYTMDAFMLGMGMLGYPNFVATYGRGYPGFAPSYGYQ
160 170 180 190 200 210
250 260 270 280
pF1KE0 FPGFPAAAYGPVAAAAVAAARGS------------------GSNPARPGGFPGANSPGPV
::::::::::::::::::::::: :::::::::::::::::::
NP_001 FPGFPAAAYGPVAAAAVAAARGSVLNSYSAQPNFGAPASPAGSNPARPGGFPGANSPGPV
220 230 240 250 260 270
290 300 310 320
pF1KE0 ADLYGPASQDSGVGNYISAASPQPGSGFGHGIAGPLIATAFTNGYH
::::::::::::::::::::::::::::::::::::::::::::::
NP_001 ADLYGPASQDSGVGNYISAASPQPGSGFGHGIAGPLIATAFTNGYH
280 290 300 310 320
>>NP_001309180 (OMIM: 607897) RNA-binding protein Musash (255 aa)
initn: 1892 init1: 1677 opt: 1677 Z-score: 1000.2 bits: 193.0 E(85289): 5.7e-49
Smith-Waterman score: 1677; 99.2% identity (99.6% similar) in 244 aa overlap (1-244:1-244)
10 20 30 40 50 60
pF1KE0 MEANGSQGTSGSANDSQHDPGKMFIGGLSWQTSPDSLRDYFSKFGEIRECMVMRDPTTKR
::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
NP_001 MEANGSQGTSGSANDSQHDPGKMFIGGLSWQTSPDSLRDYFSKFGEIRECMVMRDPTTKR
10 20 30 40 50 60
70 80 90 100 110 120
pF1KE0 SRGFGFVTFADPASVDKVLGQPHHELDSKTIDPKVAFPRRAQPKMVTRTKKIFVGGLSAN
::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
NP_001 SRGFGFVTFADPASVDKVLGQPHHELDSKTIDPKVAFPRRAQPKMVTRTKKIFVGGLSAN
70 80 90 100 110 120
130 140 150 160 170 180
pF1KE0 TVVEDVKQYFEQFGKVEDAMLMFDKTTNRHRGFGFVTFENEDVVEKVCEIHFHEINNKMV
::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
NP_001 TVVEDVKQYFEQFGKVEDAMLMFDKTTNRHRGFGFVTFENEDVVEKVCEIHFHEINNKMV
130 140 150 160 170 180
190 200 210 220 230 240
pF1KE0 ECKKAQPKEVMFPPGTRGRARGLPYTMDAFMLGMGMLGYPNFVATYGRGYPGFAPSYGYQ
::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
NP_001 ECKKAQPKEVMFPPGTRGRARGLPYTMDAFMLGMGMLGYPNFVATYGRGYPGFAPSYGYQ
190 200 210 220 230 240
250 260 270 280 290 300
pF1KE0 FPGFPAAAYGPVAAAAVAAARGSGSNPARPGGFPGANSPGPVADLYGPASQDSGVGNYIS
:: .
NP_001 FPDYLPVSQDIIFIN
250
>>NP_733839 (OMIM: 607897) RNA-binding protein Musashi h (251 aa)
initn: 1755 init1: 1533 opt: 1533 Z-score: 916.7 bits: 177.5 E(85289): 2.5e-44
Smith-Waterman score: 1533; 99.1% identity (99.6% similar) in 223 aa overlap (22-244:18-240)
10 20 30 40 50 60
pF1KE0 MEANGSQGTSGSANDSQHDPGKMFIGGLSWQTSPDSLRDYFSKFGEIRECMVMRDPTTKR
:::::::::::::::::::::::::::::::::::::::
NP_733 MADLTSVLTSVMFSPSSKMFIGGLSWQTSPDSLRDYFSKFGEIRECMVMRDPTTKR
10 20 30 40 50
70 80 90 100 110 120
pF1KE0 SRGFGFVTFADPASVDKVLGQPHHELDSKTIDPKVAFPRRAQPKMVTRTKKIFVGGLSAN
::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
NP_733 SRGFGFVTFADPASVDKVLGQPHHELDSKTIDPKVAFPRRAQPKMVTRTKKIFVGGLSAN
60 70 80 90 100 110
130 140 150 160 170 180
pF1KE0 TVVEDVKQYFEQFGKVEDAMLMFDKTTNRHRGFGFVTFENEDVVEKVCEIHFHEINNKMV
::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
NP_733 TVVEDVKQYFEQFGKVEDAMLMFDKTTNRHRGFGFVTFENEDVVEKVCEIHFHEINNKMV
120 130 140 150 160 170
190 200 210 220 230 240
pF1KE0 ECKKAQPKEVMFPPGTRGRARGLPYTMDAFMLGMGMLGYPNFVATYGRGYPGFAPSYGYQ
::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
NP_733 ECKKAQPKEVMFPPGTRGRARGLPYTMDAFMLGMGMLGYPNFVATYGRGYPGFAPSYGYQ
180 190 200 210 220 230
250 260 270 280 290 300
pF1KE0 FPGFPAAAYGPVAAAAVAAARGSGSNPARPGGFPGANSPGPVADLYGPASQDSGVGNYIS
:: .
NP_733 FPDYLPVSQDIIFIN
240 250
>>XP_011536664 (OMIM: 603328) PREDICTED: RNA-binding pro (343 aa)
initn: 1567 init1: 1080 opt: 1419 Z-score: 849.3 bits: 165.5 E(85289): 1.4e-40
Smith-Waterman score: 1676; 73.5% identity (88.1% similar) in 344 aa overlap (1-328:1-343)
10 20 30 40 50 60
pF1KE0 MEANGSQGTSGSANDSQHDPGKMFIGGLSWQTSPDSLRDYFSKFGEIRECMVMRDPTTKR
::... : .: :: ::: :::::::::::. ..::.::..:::..::.::::: :::
XP_011 METDAPQPGLASP-DSPHDPCKMFIGGLSWQTTQEGLREYFGQFGEVKECLVMRDPLTKR
10 20 30 40 50
70 80 90 100 110 120
pF1KE0 SRGFGFVTFADPASVDKVLGQPHHELDSKTIDPKVAFPRRAQPKMVTRTKKIFVGGLSAN
::::::::: : :.:::::.: .:::::::::::::::::::::::::::::::::::.:
XP_011 SRGFGFVTFMDQAGVDKVLAQSRHELDSKTIDPKVAFPRRAQPKMVTRTKKIFVGGLSVN
60 70 80 90 100 110
130 140 150 160 170 180
pF1KE0 TVVEDVKQYFEQFGKVEDAMLMFDKTTNRHRGFGFVTFENEDVVEKVCEIHFHEINNKMV
:.::::::::::::::.::::::::::::::::::::::.::.:::::::::::::::::
XP_011 TTVEDVKQYFEQFGKVDDAMLMFDKTTNRHRGFGFVTFESEDIVEKVCEIHFHEINNKMV
120 130 140 150 160 170
190 200 210 220 230
pF1KE0 ECKKAQPKEVMFPPGT-RGRARGLPYTMDAFMLGMGMLGYPNFVAT-YG-RGYPGFAPSY
::::::::::: : :. :::.: .:: :::::::.::::::.: :: :. :.: :.::.:
XP_011 ECKKAQPKEVMSPTGSARGRSRVMPYGMDAFMLGIGMLGYPGFQATTYASRSYTGLAPGY
180 190 200 210 220 230
240 250 260 270 280
pF1KE0 GYQFPGFPAAAYGPVAAAAVAAA--RGSGSNP-----------ARPGGFPGANSPGPVAD
::::..: .::::.::::.::: ::.::.: .: ::: :..::::.:.
XP_011 TYQFPAIPLTAYGPMAAAAAAAAVVRGTGSHPWTMAPPPGSTPSRTGGFLGTTSPGPMAE
240 250 260 270 280 290
290 300 310 320
pF1KE0 LYGPASQDSGVGNYISAASPQPGSGFGHGIAGPLIATAFTNGYH
::: :.:::::..::::::: :..::::...:::::::::::::
XP_011 LYGAANQDSGVSSYISAASPAPSTGFGHSLGGPLIATAFTNGYH
300 310 320 330 340
>>XP_006719466 (OMIM: 603328) PREDICTED: RNA-binding pro (351 aa)
initn: 1656 init1: 1080 opt: 1332 Z-score: 798.7 bits: 156.2 E(85289): 9.4e-38
Smith-Waterman score: 1664; 72.2% identity (85.8% similar) in 352 aa overlap (1-328:1-351)
10 20 30 40 50 60
pF1KE0 MEANGSQGTSGSANDSQHDPGKMFIGGLSWQTSPDSLRDYFSKFGEIRECMVMRDPTTKR
::... : .: :: ::: :::::::::::. ..::.::..:::..::.::::: :::
XP_006 METDAPQPGLASP-DSPHDPCKMFIGGLSWQTTQEGLREYFGQFGEVKECLVMRDPLTKR
10 20 30 40 50
70 80 90 100 110 120
pF1KE0 SRGFGFVTFADPASVDKVLGQPHHELDSKTIDPKVAFPRRAQPKMVTRTKKIFVGGLSAN
::::::::: : :.:::::.: .:::::::::::::::::::::::::::::::::::.:
XP_006 SRGFGFVTFMDQAGVDKVLAQSRHELDSKTIDPKVAFPRRAQPKMVTRTKKIFVGGLSVN
60 70 80 90 100 110
130 140 150 160 170 180
pF1KE0 TVVEDVKQYFEQFGKVEDAMLMFDKTTNRHRGFGFVTFENEDVVEKVCEIHFHEINNKMV
:.::::::::::::::.::::::::::::::::::::::.::.:::::::::::::::::
XP_006 TTVEDVKQYFEQFGKVDDAMLMFDKTTNRHRGFGFVTFESEDIVEKVCEIHFHEINNKMV
120 130 140 150 160 170
190 200 210 220 230
pF1KE0 ECKKAQPKEVMFPPGT-RGRARGLPYTMDAFMLGMGMLGYPNFVAT-YG-RGYPGFAPSY
::::::::::: : :. :::.: .:: :::::::.::::::.: :: :. :.: :.::.:
XP_006 ECKKAQPKEVMSPTGSARGRSRVMPYGMDAFMLGIGMLGYPGFQATTYASRSYTGLAPGY
180 190 200 210 220 230
240 250 260 270
pF1KE0 GYQFPGF-------------------PAAAYGPVAAAAVAAA--RGSGSNPARPGGFPGA
:::: : : .::::.::::.::: ::.::.:.: ::: :.
XP_006 TYQFPEFRVERTPLPSAPVLPELTAIPLTAYGPMAAAAAAAAVVRGTGSTPSRTGGFLGT
240 250 260 270 280 290
280 290 300 310 320
pF1KE0 NSPGPVADLYGPASQDSGVGNYISAASPQPGSGFGHGIAGPLIATAFTNGYH
.::::.:.::: :.:::::..::::::: :..::::...:::::::::::::
XP_006 TSPGPMAELYGAANQDSGVSSYISAASPAPSTGFGHSLGGPLIATAFTNGYH
300 310 320 330 340 350
328 residues in 1 query sequences
60827320 residues in 85289 library sequences
Tcomplib [36.3.4 Apr, 2011] (8 proc)
start: Sat Nov 5 04:18:41 2016 done: Sat Nov 5 04:18:42 2016
Total Scan time: 7.950 Total Display time: 0.030
Function used was FASTA [36.3.4 Apr, 2011]