(Circular) (Six-base) MAPSORT of: pFN21AE0859.seq Check: 4528 from: 1 to: 5692 pFN21AE0859 5692 bp With 182 enzymes: SgfI * October 20, 2009 10:52 .. AarI CACCTGCnnnn'nnnn_ Cuts at: 2565 2735 2565 Size: 170 5522 AatII G_ACGT'C Cuts at: 278 331 414 600 1536 3502 278 Size: 53 83 186 936 1966 2468 Fragments arranged by size: 2468 1966 936 186 83 53 AccI GT'mk_AC Cuts at: 1937 3035 1937 Size: 1098 4594 Acc65I G'GTAC_C Cuts at: 3013 3013 Size: 5692 AclI AA'CG_TT Cuts at: 1563 3819 4192 1563 Size: 2256 373 3063 Fragments arranged by size: 3063 2256 373 AcuI CTGAAGnnnnnnnnnnnnnn_nn' Cuts at: 1632 2047 2582 2721 2807 2901 3755 5139 5407 Size: 415 535 139 86 94 854 1384 268 Cuts at: 5407 1632 Size: 1917 Fragments arranged by size: 1917 1384 854 535 415 268 139 94 86 AflII C'TTAA_G Cuts at: 820 1017 2684 820 Size: 197 1667 3828 Fragments arranged by size: 3828 1667 197 AflIII A'CryG_T Cuts at: 1203 4591 5568 1203 Size: 3388 977 1327 Fragments arranged by size: 3388 1327 977 AgeI A'CCGG_T Cuts at: 4523 4523 Size: 5692 AhdI GACnn_n'nnGTC Cuts at: 4421 4421 Size: 5692 AleI CACnn'nnGTG Cuts at: 1166 2027 1166 Size: 861 4831 AlfI GCAnnnnnnTGCnnnnnnnnnn_nn' Cuts at: 1184 1184 Size: 5692 AlwNI CAG_nnn'CTG Cuts at: 2619 3435 5007 2619 Size: 816 1572 3304 Fragments arranged by size: 3304 1572 816 ApaLI G'TGCA_C Cuts at: 3749 4905 3749 Size: 1156 4536 ApoI r'AATT_y Cuts at: 1493 2017 3001 3227 3379 5488 1493 Size: 524 984 226 152 2109 1697 Fragments arranged by size: 2109 1697 984 524 226 152 AseI AT'TA_AT Cuts at: 160 1032 4246 160 Size: 872 3214 1606 Fragments arranged by size: 3214 1606 872 AsiSI GCG_AT'CGC Cuts at: 2001 2001 Size: 5692 AvaI C'yCGr_G Cuts at: 1870 1943 3017 1870 Size: 73 1074 4545 Fragments arranged by size: 4545 1074 73 BamHI G'GATC_C Cuts at: 3022 3389 3022 Size: 367 5325 BanI G'GyrC_C Cuts at: 618 943 1160 1787 3013 4468 618 Size: 325 217 627 1226 1455 1842 Fragments arranged by size: 1842 1455 1226 627 325 217 BanII G_rGCy'C Cuts at: 1391 3011 1391 Size: 1620 4072 BbsI GAAGACnn'nnnn_ Cuts at: 928 1899 2077 2089 928 Size: 971 178 12 4531 Fragments arranged by size: 4531 971 178 12 BbvCI CC'TCA_GC Cuts at: 2695 2695 Size: 5692 BcgI CGAnnnnnnTGCnnnnnnnnnn_nn' Cuts at: 1903 1937 1987 2021 3883 3917 1903 Size: 34 50 34 1862 34 3678 Fragments arranged by size: 3678 1862 50 34 34 34 BciVI GTATCCnnnnn_n' Cuts at: 2441 3584 4794 2441 Size: 1143 1210 3339 Fragments arranged by size: 3339 1210 1143 BclI T'GATC_A Cuts at: 1548 1548 Size: 5692 BglI GCCn_nnn'nGGC Cuts at: 136 243 365 436 1067 1672 4303 136 Size: 107 122 71 631 605 2631 1525 Fragments arranged by size: 2631 1525 631 605 122 107 71 BglII A'GATC_T Cuts at: 5687 5687 Size: 5692 BlpI GC'TnA_GC Cuts at: 3109 3109 Size: 5692 Bme1580I G_kGCm'C Cuts at: 1790 3753 4909 1790 Size: 1963 1156 2573 Fragments arranged by size: 2573 1963 1156 BmgBI CAC'GTC Cuts at: 1318 1318 Size: 5692 BmrI ACTGGGnnnn_n' Cuts at: 442 858 911 994 1393 1417 2462 3423 4381 Size: 416 53 83 399 24 1045 961 958 Cuts at: 4381 442 Size: 1753 Fragments arranged by size: 1753 1045 961 958 416 399 83 53 24 BmtI G_CTAG'C Cuts at: 1056 1056 Size: 5692 BpmI CTGGAGnnnnnnnnnnnnnn_nn' Cuts at: 1239 2041 4352 1239 Size: 802 2311 2579 Fragments arranged by size: 2579 2311 802 Bpu10I CC'TnA_GC Cuts at: 2695 2695 Size: 5692 BpuEI CTTGAGnnnnnnnnnnnnnn_nn' Cuts at: 3817 4682 4980 3817 Size: 865 298 4529 Fragments arranged by size: 4529 865 298 BsaI GGTCTCn'nnnn_ Cuts at: 882 1499 2210 2264 4355 882 Size: 617 711 54 2091 2219 Fragments arranged by size: 2219 2091 711 617 54 BsaAI yAC'GTr Cuts at: 493 1204 3483 493 Size: 711 2279 2702 Fragments arranged by size: 2702 2279 711 BsaBI GATnn'nnATC Cuts at: 5686 5686 Size: 5692 BsaHI Gr'CG_yC Cuts at: 275 328 411 597 1533 3499 3881 4516 275 Size: 53 83 186 936 1966 382 635 1451 Fragments arranged by size: 1966 1451 936 635 382 186 83 53 BsaWI w'CCGG_w Cuts at: 4125 4523 4797 4944 5355 4125 Size: 398 274 147 411 4462 Fragments arranged by size: 4462 411 398 274 147 BsaXI ACnnnnnCTCCnnnnnnn_nnn' Cuts at: 1178 1208 1373 1403 2921 2951 1178 Size: 30 165 30 1518 30 3919 Fragments arranged by size: 3919 1518 165 30 30 30 BseRI GAGGAGnnnnnnnn_nn' Cuts at: 1186 1186 Size: 5692 BseYI C'CCAG_C Cuts at: 4895 5391 4895 Size: 496 5196 BsgI GTGCAGnnnnnnnnnnnnnn_nn' Cuts at: 1163 1736 2557 2892 1163 Size: 573 821 335 3963 Fragments arranged by size: 3963 821 573 335 BsiEI CG_ry'CG Cuts at: 1540 1815 2001 3142 3903 4931 1540 Size: 275 186 1141 761 1028 2301 Fragments arranged by size: 2301 1141 1028 761 275 186 BsiHKAI G_wGCw'C Cuts at: 3753 3838 4909 3753 Size: 85 1071 4536 Fragments arranged by size: 4536 1071 85 BsmI GAATG_Cn' Cuts at: 3203 3296 3203 Size: 93 5599 Bsp1286I G_dGCh'C Cuts at: 1391 1790 3011 3753 3838 4909 1391 Size: 399 1221 742 85 1071 2174 Fragments arranged by size: 2174 1221 1071 742 399 85 BspEI T'CCGG_A Cuts at: 5355 5355 Size: 5692 BspHI T'CATG_A Cuts at: 2142 3581 5311 2142 Size: 1439 1730 2523 Fragments arranged by size: 2523 1730 1439 BspMI ACCTGCnnnn'nnnn_ Cuts at: 844 2121 2228 2565 2735 3047 844 Size: 1277 107 337 170 312 3489 Fragments arranged by size: 3489 1277 337 312 170 107 BsrBI CCG'CTC Cuts at: 1394 1823 3579 1394 Size: 429 1756 3507 Fragments arranged by size: 3507 1756 429 BsrDI GCAATG_nn' Cuts at: 65 1248 2137 2280 4187 4361 65 Size: 1183 889 143 1907 174 1396 Fragments arranged by size: 1907 1396 1183 889 174 143 BsrFI r'CCGG_y Cuts at: 1700 1810 4336 4523 1700 Size: 110 2526 187 2869 Fragments arranged by size: 2869 2526 187 110 BsrGI T'GTAC_A Cuts at: 96 2872 96 Size: 2776 2916 BssHII G'CGCG_C Cuts at: 1925 1925 Size: 5692 BssSI C'ACGA_G Cuts at: 3752 4764 3752 Size: 1012 4680 BstAPI GCAn_nnn'nTGC Cuts at: 794 794 Size: 5692 BstBI TT'CG_AA Cuts at: 4496 4496 Size: 5692 BstEII G'GTnAC_C Cuts at: 1184 1184 Size: 5692 BstYI r'GATC_y Cuts at: 1972 3022 3389 3774 3791 5243 5329 5341 5687 Size: 1050 367 385 17 1452 86 12 346 Cuts at: 5687 1972 Size: 1977 Fragments arranged by size: 1977 1452 1050 385 367 346 86 17 12 Bsu36I CC'TnA_GG Cuts at: 2396 2396 Size: 5692 BtgI C'CryG_G Cuts at: 513 1065 2917 513 Size: 552 1852 3288 Fragments arranged by size: 3288 1852 552 BtgZI GCGATGnnnnnnnnnn'nnnn_ Cuts at: 487 1170 1226 487 Size: 683 56 4953 Fragments arranged by size: 4953 683 56 BtsI GCAGTG_nn' Cuts at: 3208 4002 4022 3208 Size: 794 20 4878 Fragments arranged by size: 4878 794 20 ClaI AT'CG_AT Cuts at: 1554 1554 Size: 5692 CspCI CAAnnnnnGTGGnnnnnnnnnn_nn' Cuts at: 529 564 529 Size: 35 5657 DraI TTT'AAA Cuts at: 2996 2996 Size: 5692 DrdI GACnn_nn'nnGTC Cuts at: 809 1316 2585 4699 809 Size: 507 1269 2114 1802 Fragments arranged by size: 2114 1802 1269 507 EaeI y'GGCC_r Cuts at: 8 62 1487 1537 1812 1830 2232 2379 2472 Size: 54 1425 50 275 18 402 147 93 Cuts at: 2472 3139 4028 5657 8 Size: 667 889 1629 43 Fragments arranged by size: 1629 1425 889 667 402 275 147 93 54 50 43 18 EagI C'GGCC_G Cuts at: 1537 1812 3139 1537 Size: 275 1327 4090 Fragments arranged by size: 4090 1327 275 EarI CTCTTCn'nnn_ Cuts at: 1353 2315 2942 3622 1353 Size: 962 627 680 3423 Fragments arranged by size: 3423 962 680 627 EciI GGCGGAnnnnnnnnn_nn' Cuts at: 387 1451 1589 4279 4653 4799 387 Size: 1064 138 2690 374 146 1280 Fragments arranged by size: 2690 1280 1064 374 146 138 Eco57MI CTGrAGnnnnnnnnnnnnnn_nn' Cuts at: 1239 1632 2041 2047 2582 2721 2807 2901 3755 Size: 393 409 6 535 139 86 94 854 Cuts at: 3755 4352 5139 5407 1239 Size: 597 787 268 1524 Fragments arranged by size: 1524 854 787 597 535 409 393 268 139 94 86 6 EcoNI CCTnn'n_nnAGG Cuts at: 2813 2813 Size: 5692 EcoO109I rG'GnC_Cy Cuts at: 2424 2424 Size: 5692 EcoRI G'AATT_C Cuts at: 3001 3379 3001 Size: 378 5314 FalI AAGnnnnnCTTnnnnnnnn_nnnnn' Cuts at: 2734 2734 Size: 5692 FspI TGC'GCA Cuts at: 4198 4198 Size: 5692 HaeII r_GCGC'y Cuts at: 1678 4839 1678 Size: 3161 2531 Hin4I GAynnnnnvTCnnnnnnnn_nnnnn' Cuts at: 1373 1405 1540 1572 2827 2859 4333 4365 4407 Size: 32 135 32 1255 32 1474 32 42 Cuts at: 4407 4439 1373 Size: 32 2626 Fragments arranged by size: 2626 1474 1255 135 42 32 32 32 32 32 HincII GTy'rAC Cuts at: 669 1657 1938 3036 3282 669 Size: 988 281 1098 246 3079 Fragments arranged by size: 3079 1098 988 281 246 HindIII A'AGCT_T Cuts at: 748 748 Size: 5692 HpaI GTT'AAC Cuts at: 3282 3282 Size: 5692 KpnI G_GTAC'C Cuts at: 3017 3017 Size: 5692 MfeI C'AATT_G Cuts at: 3291 3291 Size: 5692 MluI A'CGCG_T Cuts at: 5568 5568 Size: 5692 MmeI TCCrACnnnnnnnnnnnnnnnnnn_nn' Cuts at: 1305 2458 4806 4990 1305 Size: 1153 2348 184 2007 Fragments arranged by size: 2348 2007 1153 184 MscI TGG'CCA Cuts at: 10 64 1489 1832 2234 2381 2474 10 Size: 54 1425 343 402 147 93 3228 Fragments arranged by size: 3228 1425 402 343 147 93 54 MslI CAynn'nnrTG Cuts at: 518 1166 2027 2180 2357 2831 3650 4009 4168 Size: 648 861 153 177 474 819 359 159 Cuts at: 4168 518 Size: 2042 Fragments arranged by size: 2042 861 819 648 474 359 177 159 153 MspA1I CmG'CkG Cuts at: 1606 2699 3108 3785 4933 5178 1606 Size: 1093 409 677 1148 245 2120 Fragments arranged by size: 2120 1148 1093 677 409 245 NcoI C'CATG_G Cuts at: 513 1065 513 Size: 552 5140 NdeI CA'TA_TG Cuts at: 387 2247 387 Size: 1860 3832 NheI G'CTAG_C Cuts at: 1052 1052 Size: 5692 NotI GC'GGCC_GC Cuts at: 3139 3139 Size: 5692 NspI r_CATG'y Cuts at: 1132 1229 2203 3050 4595 1132 Size: 97 974 847 1545 2229 Fragments arranged by size: 2229 1545 974 847 97 PasI CC'CwG_GG Cuts at: 1348 2809 1348 Size: 1461 4231 PciI A'CATG_T Cuts at: 4591 4591 Size: 5692 PflMI CCAn_nnn'nTGG Cuts at: 1108 1108 Size: 5692 PmeI GTTT'AAAC Cuts at: 2996 2996 Size: 5692 PpiI GAACnnnnnCTCnnnnnnnn_nnnnn' Cuts at: 3761 3793 5274 5306 3761 Size: 32 1481 32 4147 Fragments arranged by size: 4147 1481 32 32 PshAI GACnn'nnGTC Cuts at: 1613 1613 Size: 5692 PsiI TTA'TAA Cuts at: 2981 3262 2981 Size: 281 5411 PstI C_TGCA'G Cuts at: 830 3044 830 Size: 2214 3478 PvuI CG_AT'CG Cuts at: 2001 2001 Size: 5692 PvuII CAG'CTG Cuts at: 2699 2699 Size: 5692 SalI G'TCGA_C Cuts at: 1936 3034 1936 Size: 1098 4594 SapI GCTCTTCn'nnn_ Cuts at: 2315 2315 Size: 5692 SbfI CC_TGCA'GG Cuts at: 3044 3044 Size: 5692 ScaI AGT'ACT Cuts at: 3940 5652 3940 Size: 1712 3980 SfcI C'TryA_G Cuts at: 826 1045 3040 4175 4856 5047 826 Size: 219 1995 1135 681 191 1471 Fragments arranged by size: 1995 1471 1135 681 219 191 SgfI GCG_AT'CGC Cuts at: 2001 2001 Size: 5692 SgrAI Cr'CCGG_yG Cuts at: 1700 1700 Size: 5692 SmaI CCC'GGG Cuts at: 1872 3019 1872 Size: 1147 4545 SmlI C'TyrA_G Cuts at: 820 1017 1943 2684 3796 4697 4959 820 Size: 197 926 741 1112 901 262 1553 Fragments arranged by size: 1553 1112 926 901 741 262 197 SnaBI TAC'GTA Cuts at: 493 3483 493 Size: 2990 2702 SpeI A'CTAG_T Cuts at: 152 152 Size: 5692 SphI G_CATG'C Cuts at: 1132 2203 3050 1132 Size: 1071 847 3774 Fragments arranged by size: 3774 1071 847 SspI AAT'ATT Cuts at: 5 52 3616 5 Size: 47 3564 2081 Fragments arranged by size: 3564 2081 47 StuI AGG'CCT Cuts at: 1517 2717 1517 Size: 1200 4492 StyI C'CwwG_G Cuts at: 513 1065 2464 3131 513 Size: 552 1399 667 3074 Fragments arranged by size: 3074 1399 667 552 TaqII GACCGAnnnnnnnnn_nn' Cuts at: 325 1580 2303 3719 3736 3889 4074 4519 325 Size: 1255 723 1416 17 153 185 445 1498 Fragments arranged by size: 1498 1416 1255 723 445 185 153 17 TatI w'GTAC_w Cuts at: 96 370 450 483 534 1977 2184 2872 3938 Size: 274 80 33 51 1443 207 688 1066 Cuts at: 3938 5650 96 Size: 1712 138 Fragments arranged by size: 1712 1443 1066 688 274 207 138 80 51 33 TstI CACnnnnnnTCCnnnnnnn_nnnnn' Cuts at: 5652 5684 5652 Size: 32 5660 Tth111I GACn'n_nGTC Cuts at: 1316 1316 Size: 5692 XbaI T'CTAG_A Cuts at: 3028 3028 Size: 5692 XcmI CCAnnnn_n'nnnnTGG Cuts at: 2155 2252 2441 2155 Size: 97 189 5406 Fragments arranged by size: 5406 189 97 XhoI C'TCGA_G Cuts at: 1943 1943 Size: 5692 XmaI C'CCGG_G Cuts at: 1870 3017 1870 Size: 1147 4545 XmnI GAAnn'nnTTC Cuts at: 3821 3821 Size: 5692 ZraI GAC'GTC Cuts at: 276 329 412 598 1534 3500 276 Size: 53 83 186 936 1966 2468 Fragments arranged by size: 2468 1966 936 186 83 53 Enzymes that do cut: AarI AatII AccI Acc65I AclI AcuI AflII AflIII AgeI AhdI AleI AlfI AlwNI ApaLI ApoI AseI AsiSI AvaI BamHI BanI BanII BbsI BbvCI BcgI BciVI BclI BglI BglII BlpI Bme1580I BmgBI BmrI BmtI BpmI Bpu10I BpuEI BsaI BsaAI BsaBI BsaHI BsaWI BsaXI BseRI BseYI BsgI BsiEI BsiHKAI BsmI Bsp1286I BspEI BspHI BspMI BsrBI BsrDI BsrFI BsrGI BssHII BssSI BstAPI BstBI BstEII BstYI Bsu36I BtgI BtgZI BtsI ClaI CspCI DraI DrdI EaeI EagI EarI EciI Eco57MI EcoNI EcoO109I EcoRI FalI FspI HaeII Hin4I HincII HindIII HpaI KpnI MfeI MluI MmeI MscI MslI MspA1I NcoI NdeI NheI NotI NspI PasI PciI PflMI PmeI PpiI PshAI PsiI PstI PvuI PvuII SalI SapI SbfI ScaI SfcI SgfI SgrAI SmaI SmlI SnaBI SpeI SphI SspI StuI StyI TaqII TatI TstI Tth111I XbaI XcmI XhoI XmaI XmnI ZraI Enzymes that do not cut: AfeI AloI ApaI AscI AvrII BaeI BbeI BfrBI BplI BsiWI BsmBI BstXI BstZ17I DraIII EcoICRI EcoRV FseI FspAI KasI NaeI NarI NgoMIV NruI NsiI PacI PfoI PmlI PpuMI PspOMI PspXI PsrI RsrII SacI SacII SanDI SexAI SfiI SfoI SrfI SwaI