(Circular) (Six-base) MAPSORT of: pFN21AE0853.seq Check: 993 from: 1 to: 5635 pFN21AE0853 5635 bp With 182 enzymes: SgfI * October 20, 2009 10:52 .. AarI CACCTGCnnnn'nnnn_ Cuts at: 2921 2921 Size: 5635 AatII G_ACGT'C Cuts at: 278 331 414 600 1536 2628 3445 278 Size: 53 83 186 936 1092 817 2468 Fragments arranged by size: 2468 1092 936 817 186 83 53 AccI GT'mk_AC Cuts at: 1937 2769 2978 1937 Size: 832 209 4594 Fragments arranged by size: 4594 832 209 Acc65I G'GTAC_C Cuts at: 2385 2956 2385 Size: 571 5064 AclI AA'CG_TT Cuts at: 1563 3762 4135 1563 Size: 2199 373 3063 Fragments arranged by size: 3063 2199 373 AcuI CTGAAGnnnnnnnnnnnnnn_nn' Cuts at: 1632 2717 2936 3698 5082 5350 1632 Size: 1085 219 762 1384 268 1917 Fragments arranged by size: 1917 1384 1085 762 268 219 AflII C'TTAA_G Cuts at: 820 1017 820 Size: 197 5438 AflIII A'CryG_T Cuts at: 1203 2229 4534 5511 1203 Size: 1026 2305 977 1327 Fragments arranged by size: 2305 1327 1026 977 AgeI A'CCGG_T Cuts at: 4466 4466 Size: 5635 AhdI GACnn_n'nnGTC Cuts at: 4364 4364 Size: 5635 AleI CACnn'nnGTG Cuts at: 1166 1166 Size: 5635 AlfI GCAnnnnnnTGCnnnnnnnnnn_nn' Cuts at: 1184 1184 Size: 5635 AlwNI CAG_nnn'CTG Cuts at: 2407 2837 3378 4950 2407 Size: 430 541 1572 3092 Fragments arranged by size: 3092 1572 541 430 ApaI G_GGCC'C Cuts at: 2532 2532 Size: 5635 ApaLI G'TGCA_C Cuts at: 3692 4848 3692 Size: 1156 4479 ApoI r'AATT_y Cuts at: 1493 2944 3170 3322 5431 1493 Size: 1451 226 152 2109 1697 Fragments arranged by size: 2109 1697 1451 226 152 AseI AT'TA_AT Cuts at: 160 1032 4189 160 Size: 872 3157 1606 Fragments arranged by size: 3157 1606 872 AsiSI GCG_AT'CGC Cuts at: 2001 2001 Size: 5635 AvaI C'yCGr_G Cuts at: 1870 1943 2960 1870 Size: 73 1017 4545 Fragments arranged by size: 4545 1017 73 BamHI G'GATC_C Cuts at: 2965 3332 2965 Size: 367 5268 BanI G'GyrC_C Cuts at: 618 943 1160 1787 2385 2721 2956 4411 618 Size: 325 217 627 598 336 235 1455 1842 Fragments arranged by size: 1842 1455 627 598 336 325 235 217 BanII G_rGCy'C Cuts at: 1391 2532 2954 1391 Size: 1141 422 4072 Fragments arranged by size: 4072 1141 422 BbeI G_GCGC'C Cuts at: 2725 2725 Size: 5635 BbsI GAAGACnn'nnnn_ Cuts at: 928 1899 2098 928 Size: 971 199 4465 Fragments arranged by size: 4465 971 199 BcgI CGAnnnnnnTGCnnnnnnnnnn_nn' Cuts at: 1903 1937 3826 3860 1903 Size: 34 1889 34 3678 Fragments arranged by size: 3678 1889 34 34 BciVI GTATCCnnnnn_n' Cuts at: 3527 4737 3527 Size: 1210 4425 BclI T'GATC_A Cuts at: 1548 1548 Size: 5635 BfrBI ATG'CAT Cuts at: 2482 2482 Size: 5635 BglI GCCn_nnn'nGGC Cuts at: 136 243 365 436 1067 1672 4246 136 Size: 107 122 71 631 605 2574 1525 Fragments arranged by size: 2574 1525 631 605 122 107 71 BglII A'GATC_T Cuts at: 5630 5630 Size: 5635 BlpI GC'TnA_GC Cuts at: 3052 3052 Size: 5635 Bme1580I G_kGCm'C Cuts at: 1790 2532 3696 4852 1790 Size: 742 1164 1156 2573 Fragments arranged by size: 2573 1164 1156 742 BmgBI CAC'GTC Cuts at: 1318 1318 Size: 5635 BmrI ACTGGGnnnn_n' Cuts at: 442 858 911 994 1393 1417 2344 2411 3366 Size: 416 53 83 399 24 927 67 955 Cuts at: 3366 4324 442 Size: 958 1753 Fragments arranged by size: 1753 958 955 927 416 399 83 67 53 24 BmtI G_CTAG'C Cuts at: 1056 1056 Size: 5635 BpmI CTGGAGnnnnnnnnnnnnnn_nn' Cuts at: 1239 2478 4295 1239 Size: 1239 1817 2579 Fragments arranged by size: 2579 1817 1239 BpuEI CTTGAGnnnnnnnnnnnnnn_nn' Cuts at: 3760 4625 4923 3760 Size: 865 298 4472 Fragments arranged by size: 4472 865 298 BsaI GGTCTCn'nnnn_ Cuts at: 882 1499 4298 882 Size: 617 2799 2219 Fragments arranged by size: 2799 2219 617 BsaAI yAC'GTr Cuts at: 493 1204 3426 493 Size: 711 2222 2702 Fragments arranged by size: 2702 2222 711 BsaBI GATnn'nnATC Cuts at: 5629 5629 Size: 5635 BsaHI Gr'CG_yC Cuts at: 275 328 411 597 1533 2625 2722 3442 3824 Size: 53 83 186 936 1092 97 720 382 Cuts at: 3824 4459 275 Size: 635 1451 Fragments arranged by size: 1451 1092 936 720 635 382 186 97 83 53 BsaWI w'CCGG_w Cuts at: 4068 4466 4740 4887 5298 4068 Size: 398 274 147 411 4405 Fragments arranged by size: 4405 411 398 274 147 BsaXI ACnnnnnCTCCnnnnnnn_nnn' Cuts at: 1178 1208 1373 1403 2451 2481 1178 Size: 30 165 30 1048 30 4332 Fragments arranged by size: 4332 1048 165 30 30 30 BseRI GAGGAGnnnnnnnn_nn' Cuts at: 1186 2084 2230 1186 Size: 898 146 4591 Fragments arranged by size: 4591 898 146 BseYI C'CCAG_C Cuts at: 2134 4838 5334 2134 Size: 2704 496 2435 Fragments arranged by size: 2704 2435 496 BsgI GTGCAGnnnnnnnnnnnnnn_nn' Cuts at: 1163 1736 2393 1163 Size: 573 657 4405 Fragments arranged by size: 4405 657 573 BsiEI CG_ry'CG Cuts at: 1540 1815 2001 3085 3846 4874 1540 Size: 275 186 1084 761 1028 2301 Fragments arranged by size: 2301 1084 1028 761 275 186 BsiHKAI G_wGCw'C Cuts at: 2188 2217 2424 3696 3781 4852 2188 Size: 29 207 1272 85 1071 2971 Fragments arranged by size: 2971 1272 1071 207 85 29 BsmI GAATG_Cn' Cuts at: 3146 3239 3146 Size: 93 5542 Bsp1286I G_dGCh'C Cuts at: 1391 1790 2188 2217 2424 2532 2954 3696 3781 Size: 399 398 29 207 108 422 742 85 Cuts at: 3781 4852 1391 Size: 1071 2174 Fragments arranged by size: 2174 1071 742 422 399 398 207 108 85 29 BspEI T'CCGG_A Cuts at: 5298 5298 Size: 5635 BspHI T'CATG_A Cuts at: 2424 3524 5254 2424 Size: 1100 1730 2805 Fragments arranged by size: 2805 1730 1100 BspMI ACCTGCnnnn'nnnn_ Cuts at: 844 2151 2921 2990 844 Size: 1307 770 69 3489 Fragments arranged by size: 3489 1307 770 69 BsrBI CCG'CTC Cuts at: 1394 1823 3522 1394 Size: 429 1699 3507 Fragments arranged by size: 3507 1699 429 BsrDI GCAATG_nn' Cuts at: 65 1248 4130 4304 65 Size: 1183 2882 174 1396 Fragments arranged by size: 2882 1396 1183 174 BsrFI r'CCGG_y Cuts at: 1700 1810 2471 4279 4466 1700 Size: 110 661 1808 187 2869 Fragments arranged by size: 2869 1808 661 187 110 BsrGI T'GTAC_A Cuts at: 96 2196 96 Size: 2100 3535 BssHII G'CGCG_C Cuts at: 1925 1925 Size: 5635 BssSI C'ACGA_G Cuts at: 3695 4707 3695 Size: 1012 4623 BstAPI GCAn_nnn'nTGC Cuts at: 794 2352 794 Size: 1558 4077 BstBI TT'CG_AA Cuts at: 4439 4439 Size: 5635 BstEII G'GTnAC_C Cuts at: 1184 1184 Size: 5635 BstXI CCAn_nnnn'nTGG Cuts at: 2539 2539 Size: 5635 BstYI r'GATC_y Cuts at: 1972 2965 3332 3717 3734 5186 5272 5284 5630 Size: 993 367 385 17 1452 86 12 346 Cuts at: 5630 1972 Size: 1977 Fragments arranged by size: 1977 1452 993 385 367 346 86 17 12 Bsu36I CC'TnA_GG Cuts at: 2798 2798 Size: 5635 BtgI C'CryG_G Cuts at: 513 1065 2004 2037 513 Size: 552 939 33 4111 Fragments arranged by size: 4111 939 552 33 BtgZI GCGATGnnnnnnnnnn'nnnn_ Cuts at: 487 1170 1226 2010 487 Size: 683 56 784 4112 Fragments arranged by size: 4112 784 683 56 BtsI GCAGTG_nn' Cuts at: 3151 3945 3965 3151 Size: 794 20 4821 Fragments arranged by size: 4821 794 20 ClaI AT'CG_AT Cuts at: 1554 1554 Size: 5635 CspCI CAAnnnnnGTGGnnnnnnnnnn_nn' Cuts at: 529 564 529 Size: 35 5600 DraI TTT'AAA Cuts at: 2939 2939 Size: 5635 DraIII CAC_nnn'GTG Cuts at: 2163 2352 2163 Size: 189 5446 DrdI GACnn_nn'nnGTC Cuts at: 809 1316 2597 4642 809 Size: 507 1281 2045 1802 Fragments arranged by size: 2045 1802 1281 507 EaeI y'GGCC_r Cuts at: 8 62 1487 1537 1812 1830 2637 3082 3971 Size: 54 1425 50 275 18 807 445 889 Cuts at: 3971 5600 8 Size: 1629 43 Fragments arranged by size: 1629 1425 889 807 445 275 54 50 43 18 EagI C'GGCC_G Cuts at: 1537 1812 3082 1537 Size: 275 1270 4090 Fragments arranged by size: 4090 1270 275 EarI CTCTTCn'nnn_ Cuts at: 1353 2102 2912 3565 1353 Size: 749 810 653 3423 Fragments arranged by size: 3423 810 749 653 EciI GGCGGAnnnnnnnnn_nn' Cuts at: 387 1451 1589 2501 4222 4596 4742 387 Size: 1064 138 912 1721 374 146 1280 Fragments arranged by size: 1721 1280 1064 912 374 146 138 Eco57MI CTGrAGnnnnnnnnnnnnnn_nn' Cuts at: 1239 1632 2478 2717 2936 3698 4295 5082 5350 Size: 393 846 239 219 762 597 787 268 Cuts at: 5350 1239 Size: 1524 Fragments arranged by size: 1524 846 787 762 597 393 268 239 219 EcoNI CCTnn'n_nnAGG Cuts at: 2380 2380 Size: 5635 EcoRI G'AATT_C Cuts at: 2944 3322 2944 Size: 378 5257 FspI TGC'GCA Cuts at: 4141 4141 Size: 5635 HaeII r_GCGC'y Cuts at: 1678 2725 4782 1678 Size: 1047 2057 2531 Fragments arranged by size: 2531 2057 1047 Hin4I GAynnnnnvTCnnnnnnnn_nnnnn' Cuts at: 1373 1405 1540 1572 2451 2483 4276 4308 4350 Size: 32 135 32 879 32 1793 32 42 Cuts at: 4350 4382 1373 Size: 32 2626 Fragments arranged by size: 2626 1793 879 135 42 32 32 32 32 32 HincII GTy'rAC Cuts at: 669 1657 1938 2979 3225 669 Size: 988 281 1041 246 3079 Fragments arranged by size: 3079 1041 988 281 246 HindIII A'AGCT_T Cuts at: 748 748 Size: 5635 HpaI GTT'AAC Cuts at: 3225 3225 Size: 5635 KasI G'GCGC_C Cuts at: 2721 2721 Size: 5635 KpnI G_GTAC'C Cuts at: 2389 2960 2389 Size: 571 5064 MfeI C'AATT_G Cuts at: 3234 3234 Size: 5635 MluI A'CGCG_T Cuts at: 5511 5511 Size: 5635 MmeI TCCrACnnnnnnnnnnnnnnnnnn_nn' Cuts at: 1305 4749 4933 1305 Size: 3444 184 2007 Fragments arranged by size: 3444 2007 184 MscI TGG'CCA Cuts at: 10 64 1489 1832 10 Size: 54 1425 343 3813 Fragments arranged by size: 3813 1425 343 54 MslI CAynn'nnrTG Cuts at: 518 1166 2369 3593 3952 4111 518 Size: 648 1203 1224 359 159 2042 Fragments arranged by size: 2042 1224 1203 648 359 159 MspA1I CmG'CkG Cuts at: 1606 2134 2711 2834 3051 3728 4876 5121 1606 Size: 528 577 123 217 677 1148 245 2120 Fragments arranged by size: 2120 1148 677 577 528 245 217 123 NaeI GCC'GGC Cuts at: 2473 2473 Size: 5635 NarI GG'CG_CC Cuts at: 2722 2722 Size: 5635 NcoI C'CATG_G Cuts at: 513 1065 2004 513 Size: 552 939 4144 Fragments arranged by size: 4144 939 552 NdeI CA'TA_TG Cuts at: 387 387 Size: 5635 NgoMIV G'CCGG_C Cuts at: 2471 2471 Size: 5635 NheI G'CTAG_C Cuts at: 1052 1052 Size: 5635 NotI GC'GGCC_GC Cuts at: 3082 3082 Size: 5635 NsiI A_TGCA'T Cuts at: 2484 2484 Size: 5635 NspI r_CATG'y Cuts at: 1132 1229 2233 2993 4538 1132 Size: 97 1004 760 1545 2229 Fragments arranged by size: 2229 1545 1004 760 97 PasI CC'CwG_GG Cuts at: 1348 1348 Size: 5635 PciI A'CATG_T Cuts at: 2229 4534 2229 Size: 2305 3330 PflMI CCAn_nnn'nTGG Cuts at: 1108 1108 Size: 5635 PfoI T'CCnGG_A Cuts at: 2223 2223 Size: 5635 PmeI GTTT'AAAC Cuts at: 2939 2939 Size: 5635 PpiI GAACnnnnnCTCnnnnnnnn_nnnnn' Cuts at: 3704 3736 5217 5249 3704 Size: 32 1481 32 4090 Fragments arranged by size: 4090 1481 32 32 PshAI GACnn'nnGTC Cuts at: 1613 1613 Size: 5635 PsiI TTA'TAA Cuts at: 3205 3205 Size: 5635 PspOMI G'GGCC_C Cuts at: 2528 2528 Size: 5635 PstI C_TGCA'G Cuts at: 830 2987 830 Size: 2157 3478 PvuI CG_AT'CG Cuts at: 2001 2001 Size: 5635 PvuII CAG'CTG Cuts at: 2134 2134 Size: 5635 SalI G'TCGA_C Cuts at: 1936 2977 1936 Size: 1041 4594 SbfI CC_TGCA'GG Cuts at: 2987 2987 Size: 5635 ScaI AGT'ACT Cuts at: 3883 5595 3883 Size: 1712 3923 SfcI C'TryA_G Cuts at: 826 1045 2983 4118 4799 4990 826 Size: 219 1938 1135 681 191 1471 Fragments arranged by size: 1938 1471 1135 681 219 191 SfoI GGC'GCC Cuts at: 2723 2723 Size: 5635 SgfI GCG_AT'CGC Cuts at: 2001 2001 Size: 5635 SgrAI Cr'CCGG_yG Cuts at: 1700 1700 Size: 5635 SmaI CCC'GGG Cuts at: 1872 2962 1872 Size: 1090 4545 SmlI C'TyrA_G Cuts at: 820 1017 1943 3739 4640 4902 820 Size: 197 926 1796 901 262 1553 Fragments arranged by size: 1796 1553 926 901 262 197 SnaBI TAC'GTA Cuts at: 493 3426 493 Size: 2933 2702 SpeI A'CTAG_T Cuts at: 152 152 Size: 5635 SphI G_CATG'C Cuts at: 1132 2993 1132 Size: 1861 3774 SspI AAT'ATT Cuts at: 5 52 3559 5 Size: 47 3507 2081 Fragments arranged by size: 3507 2081 47 StuI AGG'CCT Cuts at: 1517 1517 Size: 5635 StyI C'CwwG_G Cuts at: 513 1065 2004 3074 513 Size: 552 939 1070 3074 Fragments arranged by size: 3074 1070 939 552 TaqII GACCGAnnnnnnnnn_nn' Cuts at: 325 1580 2363 3662 3679 3832 4017 4462 325 Size: 1255 783 1299 17 153 185 445 1498 Fragments arranged by size: 1498 1299 1255 783 445 185 153 17 TatI w'GTAC_w Cuts at: 96 370 450 483 534 1977 2196 3881 5593 Size: 274 80 33 51 1443 219 1685 1712 Cuts at: 5593 96 Size: 138 Fragments arranged by size: 1712 1685 1443 274 219 138 80 51 33 TstI CACnnnnnnTCCnnnnnnn_nnnnn' Cuts at: 5595 5627 5595 Size: 32 5603 Tth111I GACn'n_nGTC Cuts at: 1316 1316 Size: 5635 XbaI T'CTAG_A Cuts at: 2971 2971 Size: 5635 XcmI CCAnnnn_n'nnnnTGG Cuts at: 2818 2818 Size: 5635 XhoI C'TCGA_G Cuts at: 1943 1943 Size: 5635 XmaI C'CCGG_G Cuts at: 1870 2960 1870 Size: 1090 4545 XmnI GAAnn'nnTTC Cuts at: 3764 3764 Size: 5635 ZraI GAC'GTC Cuts at: 276 329 412 598 1534 2626 3443 276 Size: 53 83 186 936 1092 817 2468 Fragments arranged by size: 2468 1092 936 817 186 83 53 Enzymes that do cut: AarI AatII AccI Acc65I AclI AcuI AflII AflIII AgeI AhdI AleI AlfI AlwNI ApaI ApaLI ApoI AseI AsiSI AvaI BamHI BanI BanII BbeI BbsI BcgI BciVI BclI BfrBI BglI BglII BlpI Bme1580I BmgBI BmrI BmtI BpmI BpuEI BsaI BsaAI BsaBI BsaHI BsaWI BsaXI BseRI BseYI BsgI BsiEI BsiHKAI BsmI Bsp1286I BspEI BspHI BspMI BsrBI BsrDI BsrFI BsrGI BssHII BssSI BstAPI BstBI BstEII BstXI BstYI Bsu36I BtgI BtgZI BtsI ClaI CspCI DraI DraIII DrdI EaeI EagI EarI EciI Eco57MI EcoNI EcoRI FspI HaeII Hin4I HincII HindIII HpaI KasI KpnI MfeI MluI MmeI MscI MslI MspA1I NaeI NarI NcoI NdeI NgoMIV NheI NotI NsiI NspI PasI PciI PflMI PfoI PmeI PpiI PshAI PsiI PspOMI PstI PvuI PvuII SalI SbfI ScaI SfcI SfoI SgfI SgrAI SmaI SmlI SnaBI SpeI SphI SspI StuI StyI TaqII TatI TstI Tth111I XbaI XcmI XhoI XmaI XmnI ZraI Enzymes that do not cut: AfeI AloI AscI AvrII BaeI BbvCI BplI Bpu10I BsiWI BsmBI BstZ17I EcoICRI EcoO109I EcoRV FalI FseI FspAI NruI PacI PmlI PpuMI PspXI PsrI RsrII SacI SacII SanDI SapI SexAI SfiI SrfI SwaI